mRNA_F-distichus_contig9616.19069.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig9616.19069.1 vs. uniprot
Match: A0A6H5JHP7_9PHAE (HRDC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP7_9PHAE) HSP 1 Score: 233 bits (595), Expect = 1.390e-63 Identity = 156/379 (41.16%), Postives = 197/379 (51.98%), Query Frame = 3
Query: 354 AVSPESPVHVVEEHWTTEWDDPKYCHKRERSRSGSFFRSDLESIEESVTDEATCAGDSSAPGSGARRSFRLEESGLTATVLEAPEEDEMGLDGDGAEGNESGDLGDLLPMDLGQNLVGNDEEPCDHLEEFGDDEDEDLWDGWGNDAPDVKGEEKTAEAAGKIVLQPRVDDASVSPEPVSTPAGVPLESQETVYNGEAPNSNDADKPSASSLQATAAGKKKNRRSKGRKGKRALKIADLPNDQKIVHTDGVRLLWKAFSRTQLATAVLWRPAPEARREDSQNDKHFRTAMQRLSPPRWNEVNMRVYEDIYLWRDRTARRMDDGVCYVCPSDILIDVALAMPKSLDELRCVSVPLSPVLGKADTPEAKELVAVVRVALGLP 1490
A SP + + E W +EWDDP+ CH+RERSRSGSFFR DLESI E + A AG SA + A LE + ++GDGA G +G+ +D D EDLW+G + AG + P A+ +T VP + Q P+A P+ +V TDG+ L+WK+ SR +ATAVLWRP+ EA+RED+ +++HFRTA QRL PPRW+E+N+RVYEDI+LWRDRTARR+DDGV YVCP D LI+VALAMP ++D LR V+VPLSPVLG DTPEA ELV VVR LGLP
Sbjct: 39 ACSPAAATQLAWEPWVSEWDDPEDCHRRERSRSGSFFRPDLESIHEGARNSAFGAGLDSA---------------VAAAFLEDEGDYGCEVEGDGAIGLANGEARSFGDLD-------GDGXXXXXXXXXXXXXXEDLWEG-----------PVDSSLAGDLNSPPPEAGAAAYD---ATNTVVPEDGQ----------------PAAE-----------------------------PDPAVVVLTDGILLMWKSLSRAHVATAVLWRPSREAKREDAHSERHFRTAEQRLKPPRWSEINVRVYEDIFLWRDRTARRLDDGVAYVCPGDTLIEVALAMPTTVDGLRRVAVPLSPVLGNGDTPEAAELVRVVRARLGLP 336
BLAST of mRNA_F-distichus_contig9616.19069.1 vs. uniprot
Match: D7FHJ9_ECTSI (HRDC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHJ9_ECTSI) HSP 1 Score: 190 bits (482), Expect = 4.480e-51 Identity = 89/126 (70.63%), Postives = 108/126 (85.71%), Query Frame = 3
Query: 1110 LWKAFSRTQLATAVLWRPAPEARREDSQNDKHFRTAMQRLSPPRWNEVNMRVYEDIYLWRDRTARRMDDGVCYVCPSDILIDVALAMPKSLDELRCVSVPLSPVLGKADTPEAKELVAVVRVALGL 1487
+WK+ SR +ATAVLWRP+ EA+ ED+ +++HFRTA QRL PPRW+E+N+RVYEDI++WRDRTARR+DDGV YVCP D LI+VALAMP ++D LR V+VPLSPVLG DTPEA ELV VVRVALGL
Sbjct: 1 MWKSLSRAHVATAVLWRPSREAKGEDAHSERHFRTAEQRLRPPRWSEINVRVYEDIFVWRDRTARRLDDGVAYVCPGDTLIEVALAMPTTVDGLRRVAVPLSPVLGNGDTPEAAELVRVVRVALGL 126
BLAST of mRNA_F-distichus_contig9616.19069.1 vs. uniprot
Match: D7FJC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJC3_ECTSI) HSP 1 Score: 119 bits (297), Expect = 2.160e-25 Identity = 99/256 (38.67%), Postives = 121/256 (47.27%), Query Frame = 3
Query: 3 WRERPLSEEKLTYARCDSHYLLPLWRYLRARLLGAHTFSNRAEAKEE----QEVLTLAVKGHQHDDNDDGNVDD-----------------------GGGDAVENEDGEELLETMDLEAADVLVSTSGETWHGAADVDVRGSGK--AVSPESPVHVVEEHWTTEWDDPKYCHKRERSRSGSFFRSDLESIEESVTDEATCAGDSSAPGSGARRSFRLEESGLTATVLEAPEEDEMGLDGDGAEGNESGD---LGDL 674
WRERPLSEEKL YARCDSHYL+PLWR LRARLL A TFS+R + EE +E +K +D G G V +G + A+D L S S T ++ R + A SP + E W +EWDDP+ CH+RERSRSGSFFR DLESI E + A AG SA +TA LE E+ + GDGA G +G+ GDL
Sbjct: 55 WRERPLSEEKLVYARCDSHYLIPLWRLLRARLLAADTFSSRQDGGEEKDGREEAALREIKRR---------LDXXXXXXXXXXXXXXXXXXXXXXXGGAGSGVVAMNGATTAAGL---ASDHLRSGSSTTAVVDGNLPARSPVRSGACSPAAATQSAWEPWMSEWDDPEDCHRRERSRSGSFFRPDLESIHEGARNNACGAGLDSA---------------VTAAFLEDEEDYGGEVVGDGAIGLANGEARRFGDL 283
BLAST of mRNA_F-distichus_contig9616.19069.1 vs. uniprot
Match: A0A7S3UUB7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUB7_HETAK) HSP 1 Score: 77.4 bits (189), Expect = 1.100e-11 Identity = 41/115 (35.65%), Postives = 59/115 (51.30%), Query Frame = 3
Query: 1128 RTQLATAVLWRPAPEARREDSQNDKHFRTAMQRLSPPRWNEVNMRVYEDIYLWRDRTARRMDDGVCYVCPSDILIDVALAMPKSLDELRCVSVPLSPVLGKADTPEAKELVAVVR 1472
R Q A LW P + + D + + F+ A R RW + + + +YLWRDRTAR +DDG Y+C + L+ VA +P L LR V +PLSP LG L+ ++
Sbjct: 32 RCQKGVARLWEPKDKCKPGDHRRQRAFKAA--RRDRRRWGDRHSAAFAALYLWRDRTARELDDGPHYLCSVETLVAVAQRLPPDLAALRSVQLPLSPALGDGGNALGAALLRTIK 144
BLAST of mRNA_F-distichus_contig9616.19069.1 vs. uniprot
Match: A0A6H5JK06_9PHAE (R3H domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK06_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 3.260e-11 Identity = 38/60 (63.33%), Postives = 43/60 (71.67%), Query Frame = 3
Query: 3 WRERPLSEEKLTYARCDSHYLLPLWRYLRARLLGAHTFSNRAEAKEEQ----EVLTLAVK 170
WRERPLSEEKL YARCDSHYL+PLWR LRARLL A T +R + EE+ E L +K
Sbjct: 475 WRERPLSEEKLVYARCDSHYLIPLWRLLRARLLAADTLPSRQDGGEEEDGREEAALLEIK 534 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9616.19069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig9616.19069.1 >prot_F-distichus_contig9616.19069.1 ID=prot_F-distichus_contig9616.19069.1|Name=mRNA_F-distichus_contig9616.19069.1|organism=Fucus distichus monoicous|type=polypeptide|length=412bp MDLEAADVLVSTSGETWHGAADVDVRGSGKAVSPESPVHVVEEHWTTEWDback to top mRNA from alignment at F-distichus_contig9616:1923..4965+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig9616.19069.1 ID=mRNA_F-distichus_contig9616.19069.1|Name=mRNA_F-distichus_contig9616.19069.1|organism=Fucus distichus monoicous|type=mRNA|length=3043bp|location=Sequence derived from alignment at F-distichus_contig9616:1923..4965+ (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig9616:1923..4965+ >mRNA_F-distichus_contig9616.19069.1 ID=mRNA_F-distichus_contig9616.19069.1|Name=mRNA_F-distichus_contig9616.19069.1|organism=Fucus distichus monoicous|type=CDS|length=2472bp|location=Sequence derived from alignment at F-distichus_contig9616:1923..4965+ (Fucus distichus monoicous)back to top |