mRNA_F-distichus_contig107824.668.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig107824.668.1
Unique NamemRNA_F-distichus_contig107824.668.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig107824.668.1 vs. uniprot
Match: UPI000331455A (endonuclease III-like protein 1 n=1 Tax=Sorex araneus TaxID=42254 RepID=UPI000331455A)

HSP 1 Score: 50.1 bits (118), Expect = 7.280e-6
Identity = 22/35 (62.86%), Postives = 25/35 (71.43%), Query Frame = 1 
Query:    4 EVNGRLVGFGQQVCQAVGPSCSTCGIRDICPSSAR 108
            E+NG LVGFGQQVCQ V P C  C  R +CPS+ R
Sbjct:  240 EINGLLVGFGQQVCQPVRPRCQACLNRALCPSALR 274
[Close]
BLAST of mRNA_F-distichus_contig107824.668.1 vs. uniprot
Match: A0A814R155_9BILA (Endonuclease III homolog n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A814R155_9BILA)

HSP 1 Score: 49.7 bits (117), Expect = 1.060e-5
Identity = 23/42 (54.76%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:    4 EVNGRLVGFGQQVCQAVGPSCSTCGIRDICPSSARGGDLSKP 129
            EVN  LVGFGQ+ C+ VGP CSTC  ++ICP+      +SKP
Sbjct:  280 EVNHLLVGFGQETCRPVGPKCSTCLCKNICPTGKE--SISKP 319
[Close]
BLAST of mRNA_F-distichus_contig107824.668.1 vs. uniprot
Match: A0A6P6DM91_OCTDE (Endonuclease III-like protein 1 n=1 Tax=Octodon degus TaxID=10160 RepID=A0A6P6DM91_OCTDE)

HSP 1 Score: 48.5 bits (114), Expect = 1.750e-5
Identity = 21/34 (61.76%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:    1 SEVNGRLVGFGQQVCQAVGPSCSTCGIRDICPSS 102
            SEVNG LVGFGQQ+C  V P C TC  + +CPS+
Sbjct:  155 SEVNGLLVGFGQQICLPVHPRCQTCLNKTLCPSA 188
[Close]
BLAST of mRNA_F-distichus_contig107824.668.1 vs. uniprot
Match: A0A0G4IW80_PLABS (Endonuclease III homolog n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IW80_PLABS)

HSP 1 Score: 48.9 bits (115), Expect = 1.910e-5
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    4 EVNGRLVGFGQQVCQAVGPSCSTCGIRDICPSSARG 111
            +VN  +VGFGQQVC+A  P CSTC IR+ICP +  G
Sbjct:  241 QVNLVVVGFGQQVCKAPYPLCSTCAIREICPKNGVG 276
[Close]
BLAST of mRNA_F-distichus_contig107824.668.1 vs. uniprot
Match: A0A6P3VBU1_OCTDE (endonuclease III-like protein 1 n=1 Tax=Octodon degus TaxID=10160 RepID=A0A6P3VBU1_OCTDE)

HSP 1 Score: 48.5 bits (114), Expect = 2.360e-5
Identity = 21/34 (61.76%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:    1 SEVNGRLVGFGQQVCQAVGPSCSTCGIRDICPSS 102
            SEVNG LVGFGQQ+C  V P C TC  + +CPS+
Sbjct:  204 SEVNGLLVGFGQQICLPVHPRCQTCLNKTLCPSA 237
[Close]
BLAST of mRNA_F-distichus_contig107824.668.1 vs. uniprot
Match: UPI0004627E6A (endonuclease III-like protein 1 n=1 Tax=Anolis carolinensis TaxID=28377 RepID=UPI0004627E6A)

HSP 1 Score: 48.5 bits (114), Expect = 2.600e-5
Identity = 21/36 (58.33%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:    1 SEVNGRLVGFGQQVCQAVGPSCSTCGIRDICPSSAR 108
            SE+N  LVGFGQQ C  VGP CS C  ++ICP+S +
Sbjct:  239 SEINWLLVGFGQQTCLPVGPRCSQCLNKEICPASRK 274
[Close]
BLAST of mRNA_F-distichus_contig107824.668.1 vs. uniprot
Match: A0A6P3F181_OCTDE (Endonuclease III-like protein 1 n=2 Tax=Octodon degus TaxID=10160 RepID=A0A6P3F181_OCTDE)

HSP 1 Score: 48.5 bits (114), Expect = 2.690e-5
Identity = 21/34 (61.76%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:    1 SEVNGRLVGFGQQVCQAVGPSCSTCGIRDICPSS 102
            SEVNG LVGFGQQ+C  V P C TC  + +CPS+
Sbjct:  267 SEVNGLLVGFGQQICLPVHPRCQTCLNKTLCPSA 300
[Close]
BLAST of mRNA_F-distichus_contig107824.668.1 vs. uniprot
Match: UPI001470EBFA (LOW QUALITY PROTEIN: endonuclease III-like protein 1 n=1 Tax=Thalassophryne amazonica TaxID=390379 RepID=UPI001470EBFA)

HSP 1 Score: 48.5 bits (114), Expect = 2.690e-5
Identity = 22/34 (64.71%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:    1 SEVNGRLVGFGQQVCQAVGPSCSTCGIRDICPSS 102
            SEVNG LVGFGQQVC  V P CS C  + +CPS+
Sbjct:  272 SEVNGLLVGFGQQVCLPVRPLCSICQNQHVCPSA 305
[Close]
BLAST of mRNA_F-distichus_contig107824.668.1 vs. uniprot
Match: A0A6P7FWL1_DIAVI (endonuclease III-like protein 1 n=1 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7FWL1_DIAVI)

HSP 1 Score: 47.8 bits (112), Expect = 2.880e-5
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:    1 SEVNGRLVGFGQQVCQAVGPSCSTCGIRDICP 96
            SEVN  LVGFGQQ+C AV P CSTC  +++CP
Sbjct:  124 SEVNLLLVGFGQQICGAVKPQCSTCLNKELCP 155
[Close]
BLAST of mRNA_F-distichus_contig107824.668.1 vs. uniprot
Match: A0A8C7C792_NEOVI (Endonuclease III-like protein 1 n=3 Tax=Caniformia TaxID=379584 RepID=A0A8C7C792_NEOVI)

HSP 1 Score: 48.1 bits (113), Expect = 3.610e-5
Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    1 SEVNGRLVGFGQQVCQAVGPSCSTCGIRDICPSS-ARGG 114
            SE+NG LVGFGQQ C  + P C TC  R +CP++ +RGG
Sbjct:  243 SEINGLLVGFGQQTCLPIHPRCHTCLNRSLCPAARSRGG 281
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig107824.668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
UPI000331455A7.280e-662.86endonuclease III-like protein 1 n=1 Tax=Sorex aran... [more]
A0A814R155_9BILA1.060e-554.76Endonuclease III homolog n=1 Tax=Brachionus calyci... [more]
A0A6P6DM91_OCTDE1.750e-561.76Endonuclease III-like protein 1 n=1 Tax=Octodon de... [more]
A0A0G4IW80_PLABS1.910e-561.11Endonuclease III homolog n=1 Tax=Plasmodiophora br... [more]
A0A6P3VBU1_OCTDE2.360e-561.76endonuclease III-like protein 1 n=1 Tax=Octodon de... [more]
UPI0004627E6A2.600e-558.33endonuclease III-like protein 1 n=1 Tax=Anolis car... [more]
A0A6P3F181_OCTDE2.690e-561.76Endonuclease III-like protein 1 n=2 Tax=Octodon de... [more]
UPI001470EBFA2.690e-564.71LOW QUALITY PROTEIN: endonuclease III-like protein... [more]
A0A6P7FWL1_DIAVI2.880e-565.63endonuclease III-like protein 1 n=1 Tax=Diabrotica... [more]
A0A8C7C792_NEOVI3.610e-556.41Endonuclease III-like protein 1 n=3 Tax=Caniformia... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig107824contigF-distichus_contig107824:1674..1805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue1.6e-08
Seed eggNOG ortholog2880.D7FTS9
Preferred nameNTH1
KEGG koko:K10773
KEGG Pathwayko03410,map03410
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000702,GO:0000703,GO:0003674,GO:0003824,GO:0003906,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005911,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006289,GO:0006296,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009295,GO:0009506,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0012505,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0016787,GO:0016798,GO:0016799,GO:0018022,GO:0018193,GO:0018205,GO:0019104,GO:0019538,GO:0030054,GO:0032259,GO:0033554,GO:0033683,GO:0034641,GO:0036211,GO:0042644,GO:0042646,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0055044,GO:0071704,GO:0090304,GO:0090305,GO:0140096,GO:0140097,GO:1901360,GO:1901564
EggNOG free text desc.oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity
EggNOG OGsCOG0177@1,KOG1921@2759
Ec32 ortholog descriptionHhH-GPD domain
Ec32 orthologEc-14_000980.1
EC4.2.99.18
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons1
Model size132
Cds size132
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929012.3334646-CDS-F-distichus_contig107824:1673..18051622929012.3334646-CDS-F-distichus_contig107824:1673..1805Fucus distichus monoicousCDSF-distichus_contig107824 1674..1805 -
1690885105.3332815-CDS-F-distichus_contig107824:1673..18051690885105.3332815-CDS-F-distichus_contig107824:1673..1805Fucus distichus monoicousCDSF-distichus_contig107824 1674..1805 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig107824.668.1prot_F-distichus_contig107824.668.1Fucus distichus monoicouspolypeptideF-distichus_contig107824 1674..1805 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig107824.668.1

>prot_F-distichus_contig107824.668.1 ID=prot_F-distichus_contig107824.668.1|Name=mRNA_F-distichus_contig107824.668.1|organism=Fucus distichus monoicous|type=polypeptide|length=44bp
SEVNGRLVGFGQQVCQAVGPSCSTCGIRDICPSSARGGDLSKPP
back to top

mRNA from alignment at F-distichus_contig107824:1674..1805-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig107824.668.1 ID=mRNA_F-distichus_contig107824.668.1|Name=mRNA_F-distichus_contig107824.668.1|organism=Fucus distichus monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at F-distichus_contig107824:1674..1805- (Fucus distichus monoicous)
TCGGAGGTGAACGGGCGGTTGGTTGGGTTCGGACAGCAAGTTTGTCAAGC
GGTGGGGCCCTCGTGCTCGACGTGCGGCATAAGGGACATTTGTCCGTCGT
CGGCTAGGGGCGGCGATCTGTCGAAGCCTCCG
back to top

Coding sequence (CDS) from alignment at F-distichus_contig107824:1674..1805-

>mRNA_F-distichus_contig107824.668.1 ID=mRNA_F-distichus_contig107824.668.1|Name=mRNA_F-distichus_contig107824.668.1|organism=Fucus distichus monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at F-distichus_contig107824:1674..1805- (Fucus distichus monoicous)
TCGGAGGTGAACGGGCGGTTGGTTGGGTTCGGACAGCAAGTTTGTCAAGC
GGTGGGGCCCTCGTGCTCGACGTGCGGCATAAGGGACATTTGTCCGTCGT
CGGCTAGGGGCGGCGATCTGTCGAAGCCTCCGTCGGAGGTGAACGGGCGG
TTGGTTGGGTTCGGACAGCAAGTTTGTCAAGCGGTGGGGCCCTCGTGCTC
GACGTGCGGCATAAGGGACATTTGTCCGTCGTCGGCTAGGGGCGGCGATC
TGTCGAAGCCTCCG
back to top