mRNA_F-distichus_contig10780.667.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig10780.667.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI) HSP 1 Score: 263 bits (672), Expect = 2.050e-78 Identity = 129/278 (46.40%), Postives = 169/278 (60.79%), Query Frame = 1
Query: 43 LTESSCAAICEDFLYFGLQYGSECWCGDSSSEIDSYDESDDCDMMCTGDSDANCGGYYAMRIFTREGSPMPVSSPTP-----------------------VMTIPDECTGTKSD---IRWASGTGFNGRMYLEDGGCGTMTDLYKNRVEKDGWTPKGPIYILDDDDDIMYSPTSVTGKWLLTSELFVLRGSIFYCRGTSIGGDCDELRIQSTGSKDFNELRGHGGSLYFEKTLVTSWDTPNKSPQKDYEDGRSFLNCVSEYESDETCEGQPKNDFGEC 798
+T + CA CE YFG +Y EC+C S D E+ +CDM C+GDS CGG+ A++++ E P P +M I C G D R+A+ +G GR+Y E GC TMTDLY R ++ + KGP+Y+LDDD + P+ +T WLL +EL++ G +FYC+GTS GGDC++LRIQSTGS DF+E+RGHGGSLYFE T+VTSWDTPNK PQ+ YE+GRSFLNCVSE + + CEG KN+ GEC
Sbjct: 314 MTAAYCADFCEGSTYFGTEYAFECFCSSSGDSPDELGEASNCDMTCSGDSSETCGGFNAIQVYMLEDGPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLMEISSSC-GDDEDRPSFRYAASSGVAGRLYAEGEGCFTMTDLYNFRGTENDGSSKGPVYMLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGEC 590
BLAST of mRNA_F-distichus_contig10780.667.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE) HSP 1 Score: 192 bits (489), Expect = 4.420e-56 Identity = 89/140 (63.57%), Postives = 109/140 (77.86%), Query Frame = 1
Query: 382 MTDLYKNR-VEKDGWTPKGPIYILDDDDDIMYSPTSVTGKWLLTSELFVLRGSIFYCRGTSIGGDCDELRIQSTGSKDFNELRGHGGSLYFEKTLVTSWDTPNKSPQKDYEDGRSFLNCVSEYESDETCEGQPKNDFGEC 798
MTDLY R EKDG + KGP+Y+LDDD + P+ +T WLL +EL++ G +FYC+GTS GGDC++LRIQSTGS DF+E+RGHGGSLYFE T+VTSWDTPNK PQ+ YE GRSFLNCVSE + + CEG KN+ GEC
Sbjct: 1 MTDLYNFRGTEKDG-SSKGPVYMLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDDCEGNAKNEMGEC 139
BLAST of mRNA_F-distichus_contig10780.667.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE) HSP 1 Score: 192 bits (489), Expect = 6.120e-55 Identity = 90/146 (61.64%), Postives = 109/146 (74.66%), Query Frame = 1
Query: 361 EDGGCGTMTDLYKNRVEKDGWTPKGPIYILDDDDDIMYSPTSVTGKWLLTSELFVLRGSIFYCRGTSIGGDCDELRIQSTGSKDFNELRGHGGSLYFEKTLVTSWDTPNKSPQKDYEDGRSFLNCVSEYESDETCEGQPKNDFGEC 798
E GC T+TDLY R ++ + KGP+Y+LD + +PTSVT KWLL +EL+V G+IFYC G+ GGDCDELRIQSTG D+ E+RGHGGS+YF T+VTSWDTPNK PQ+ YE GRSFLNCVSE + ETC+G KND GEC
Sbjct: 18 ESEGCFTLTDLYNFRGTENDGSSKGPLYMLDGSGSKITAPTSVTKKWLLEAELYVTNGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGEC 163
BLAST of mRNA_F-distichus_contig10780.667.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI) HSP 1 Score: 193 bits (490), Expect = 1.440e-54 Identity = 90/146 (61.64%), Postives = 112/146 (76.71%), Query Frame = 1
Query: 361 EDGGCGTMTDLYKNRVEKDGWTPKGPIYILDDDDDIMYSPTSVTGKWLLTSELFVLRGSIFYCRGTSIGGDCDELRIQSTGSKDFNELRGHGGSLYFEKTLVTSWDTPNKSPQKDYEDGRSFLNCVSEYESDETCEGQPKNDFGEC 798
E GC T+TDLY R+E DG + KGPI+ LDD + + +P ++ KWLLT+EL + G++FYCRG+SIGGDCDELRIQSTG DF+E+R HGGS+YFE T+VTSWDTPNK+PQ Y GRSFLNCVSE + E C GQ +N+ GEC
Sbjct: 83 EGEGCFTITDLYNFRLESDG-SAKGPIFNLDDSYNTVLNPKVLSNKWLLTAELHITGGAVFYCRGSSIGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGEC 227
BLAST of mRNA_F-distichus_contig10780.667.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI) HSP 1 Score: 170 bits (430), Expect = 3.610e-47 Identity = 80/118 (67.80%), Postives = 94/118 (79.66%), Query Frame = 1
Query: 445 ILDDDDDIMYSPTSVTGKWLLTSELFVLRGSIFYCRGTSIGGDCDELRIQSTGSKDFNELRGHGGSLYFEKTLVTSWDTPNKSPQKDYEDGRSFLNCVSEYESDETCEGQPKNDFGEC 798
+LDD + + SPTSVT KWLL SEL+V G+IFYC G+ GGDCDELRIQSTG D+ E+RGHGGS+YF T+VTSWDTPNK PQ+ YE GRSFLNCVSE + ETC+G+ KND GEC
Sbjct: 1 MLDDSGNKITSPTSVTKKWLLESELYVTDGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGEC 118
BLAST of mRNA_F-distichus_contig10780.667.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI) HSP 1 Score: 165 bits (418), Expect = 1.850e-43 Identity = 95/258 (36.82%), Postives = 143/258 (55.43%), Query Frame = 1
Query: 43 LTESSCAAICED--FLYFGLQYGSECWCGDSSSEID--SYDESDDCDMMCTGDSDANCGGYYAMRIFTREGSPMPVSSPTPVMTIPDECTGTKSDIRWASGTGFNGRMYLEDGGCGTMTDLYKNRVEKDGWTPKGPIYILDDDDDIMYSPTSVTGKWLLTSELFVLRGSIFYCRGTSIGGDCDELRIQSTGSKDFNELRGHGGSLYFEKTLVTSWDTPNKSPQKDYEDGRSFLNCVSEYESDET--CEGQPKNDFGEC 798
+T C A CED + Y+ +Q+ ECWC ++ D + CD C GDSD CGG++A ++ + S TP + C + +R+ Y E GGCGT+T +Y+ + E DG P+Y+LD+++D++ + TG WLL L V+ GS GT+ GD D LR+ ST S DF E+RG+GG+L+F+ T VTSWDT N ++ DGRSF+NCV++++ C+G+ ++GEC
Sbjct: 95 MTPDMCNAYCEDLGYYYYAVQWSIECWCAPETTTADELAVHGLGTCDFACGGDSDQICGGFWAFTVYE-----VGTESTTPTPSATTSCDSAAT-VRFTDDI-----AYFEGGGCGTLTQMYEAQ-EGDG-----PLYVLDENNDVVGG--TPTGYWLLDRNLRVVDGSTLLVHGTAASGDADVLRLLST-SDDFIEVRGYGGNLHFQSTTVTSWDTDNGQEREWDGDGRSFINCVTQFDDSAIWDCDGRSNQEWGEC 332
BLAST of mRNA_F-distichus_contig10780.667.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI) HSP 1 Score: 159 bits (402), Expect = 2.520e-42 Identity = 74/147 (50.34%), Postives = 102/147 (69.39%), Query Frame = 1
Query: 361 EDGGCGTMTDLYKNRVEKDGWTPKGPIYILDDDDDIMYSPTSVTGKWLLTSELFVLRGSIFYCRGTSIGGDCDELRIQSTGSKDFNELRGHGGSLYFEKTLVTSWDTPNKSPQKDYEDGRSFLNCVSEY-ESDETCEGQPKNDFGEC 798
+ GGC T++DLY + + KGP+++LD +D + + T+ TGKWLLT++LFV G+ YCRG +GG+C ELRI+ST DF E+RGHGG+LYFE T+VTSWD + PQ+ Y+DGRSF+ CVSE ++TC N+ GEC
Sbjct: 7 DGGGCFTLSDLYAWQGFYNNGNSKGPVFVLDSNDRVDETATTTTGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDTC---AINNMGEC 150
BLAST of mRNA_F-distichus_contig10780.667.1 vs. uniprot
Match: D8LRN0_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRN0_ECTSI) HSP 1 Score: 151 bits (381), Expect = 4.160e-38 Identity = 102/293 (34.81%), Postives = 153/293 (52.22%), Query Frame = 1
Query: 4 NRIFTEGTKGIEDLTESSCAAICEDFLYFGLQYGSECWCGDSS----SEIDSYDESDDC-------DMMCTGDSDANC---GGYYAMRIFTREGSPMPVS---------SPTPVMTIPDECTGTKSDIRWASGTGFNGRMYLEDGGCGTMTDLYKNRVEKDGWTPKGPIYILDDDD---DIMYSPTSVTGKWLLTSELFVLRGSIFYCRGTSIGGDCDELRIQSTGSKDFNELRGHGGSLYFEKTLVTSWDTPNKSPQKDYE--DGRSFLNCVSEYESDETCEGQPKNDFGEC 798
+R+F+ T ++D+T CA C+ + +FGLQ+G E CG S+ +SD C +C+ A C G A + SP P + +PTP +P C TK+ ++ T Y + GGC T+TDLY +DG GP+++LD +D D TG+WLLTS + + + + G GGDCD LRI+STGSK + E+ GHGG++YFE T VTSWDT +K +++Y+ +GRSF+ C+++Y+ + +C G D G C
Sbjct: 111 DRLFSYVTT-MDDMTTELCANECKGYAFFGLQWGREAGCGTCGGTGCSQRPGLTDSDCCIGKIEESGPLCSVTGKAPCFVDGDSSAPEQTSPVPSPTPKTXXXXXXRSATPTPPTPVPSGCD-TKATVQIDKDT-----AYFKSGGCATLTDLYN---AQDG---TGPLWVLDSNDNKVDGAGGSAKPTGRWLLTSNIKIEDDATLFVEGKDRGGDCDVLRIESTGSK-YWEIFGHGGNMYFEGTKVTSWDT-SKGKEREYKKNEGRSFIRCITQYDDNYSCSGGSNKDMGTC 388
BLAST of mRNA_F-distichus_contig10780.667.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE) HSP 1 Score: 137 bits (346), Expect = 3.760e-33 Identity = 70/153 (45.75%), Postives = 94/153 (61.44%), Query Frame = 1
Query: 346 GRMYLEDGGCGTMTDLYKNRVEKDGWTPKGPIYILDDDDDIMYSPTSVTGKWLLTSELFVLRGSIFYCRGTSIGGDCDELRIQSTGSKDFNELRGHGGSLYFEKTLVTSWDTPNKSPQKDYEDGRSFLNCVSEYESD--ETCEGQPKNDFGEC 798
G+ Y+ GGC T+TD+Y + G GP+++LD +D+++ S TG WLL ++ V GS+ G GGD LRIQSTGS+D+ E+RGHGGSL F T VTSWDT K +Y+ RSF+ CVSE +D +TC+G N GEC
Sbjct: 398 GKNYIRGGGCATLTDIY---TAQGGHNDDGPLFVLDSNDNVVGG--SPTGYWLLMRDIHVEEGSLLQVHGPDAGGDARVLRIQSTGSRDYYEIRGHGGSLSFMDTKVTSWDTDEKKVNTNYKKERSFIRCVSEELADKPDTCDGHAVNHMGEC 545
BLAST of mRNA_F-distichus_contig10780.667.1 vs. uniprot
Match: D8LDB5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB5_ECTSI) HSP 1 Score: 131 bits (329), Expect = 7.160e-31 Identity = 68/153 (44.44%), Postives = 90/153 (58.82%), Query Frame = 1
Query: 346 GRMYLEDGGCGTMTDLYKNRVEKDGWTPKGPIYILDDDDDIMYSPTSVTGKWLLTSELFVLRGSIFYCRGTSIGGDCDELRIQSTGSKDFNELRGHGGSLYFEKTLVTSWDTPNKSPQKDYEDGRSFLNCVSEYESD--ETCEGQPKNDFGEC 798
G+ Y+ GGC T+TD+Y + G GP+++LD +D+++ S TG WLL ++ V S+ G GGD LRIQST S D+ E+RGHGGSL F T VTSWDT K +Y RSF+ CVSE +D +TC+G N GEC
Sbjct: 500 GKNYIRGGGCATLTDIY---TAQGGHNDDGPLFVLDSNDNVVGG--SPTGYWLLMRDIHVEEDSLLQVHGPDAGGDARVLRIQSTASNDYYEIRGHGGSLSFMDTKVTSWDTDEKEVNTNYNKERSFVRCVSEELADNPDTCDGHAVNHMGEC 647 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10780.667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig10780.667.1 >prot_F-distichus_contig10780.667.1 ID=prot_F-distichus_contig10780.667.1|Name=mRNA_F-distichus_contig10780.667.1|organism=Fucus distichus monoicous|type=polypeptide|length=266bp SNRIFTEGTKGIEDLTESSCAAICEDFLYFGLQYGSECWCGDSSSEIDSYback to top mRNA from alignment at F-distichus_contig10780:7714..10061- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig10780.667.1 ID=mRNA_F-distichus_contig10780.667.1|Name=mRNA_F-distichus_contig10780.667.1|organism=Fucus distichus monoicous|type=mRNA|length=2348bp|location=Sequence derived from alignment at F-distichus_contig10780:7714..10061- (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig10780:7714..10061- >mRNA_F-distichus_contig10780.667.1 ID=mRNA_F-distichus_contig10780.667.1|Name=mRNA_F-distichus_contig10780.667.1|organism=Fucus distichus monoicous|type=CDS|length=1596bp|location=Sequence derived from alignment at F-distichus_contig10780:7714..10061- (Fucus distichus monoicous)back to top |