mRNA_F-distichus_contig105980.511.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig105980.511.1
Unique NamemRNA_F-distichus_contig105980.511.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig105980.511.1 vs. uniprot
Match: A0A6H5KHV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHV2_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 3.190e-26
Identity = 44/47 (93.62%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 QVLNPAFDYIPPNLVDLYITNMGGLQPSYVYRLLAEYYHRDDLIISP 141
            QVLNPA+DYIPPNLVDLYITNMGGLQPSY+YRLLAEYYHRD+LIISP
Sbjct:   30 QVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDELIISP 76
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BLAST of mRNA_F-distichus_contig105980.511.1 vs. uniprot
Match: A0A6H5JGR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGR9_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.850e-25
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 QVLNPAFDYIPPNLVDLYITNMGGLQPSYVYRLLAEYYHRDDLIISP 141
            QVLNPA+D IPPNLVDLYITNMGGLQPSY+YRLLAEYYHRDDLIISP
Sbjct:   30 QVLNPAYDCIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISP 76
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BLAST of mRNA_F-distichus_contig105980.511.1 vs. uniprot
Match: D8LHD8_ECTSI (Eukaryotic translation initiation factor 2B beta subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHD8_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 5.840e-25
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 QVLNPAFDYIPPNLVDLYITNMGGLQPSYVYRLLAEYYHRDDLIISPSHEQ 153
            +VLNPA+DYIPPNLVDLYITNMGGLQPSY+YRLLAEYYHRDDLIISPS EQ
Sbjct:  422 EVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISPSDEQ 472
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BLAST of mRNA_F-distichus_contig105980.511.1 vs. uniprot
Match: A0A836CBW3_9STRA (Eukaryotic translation initiation factor 2B beta subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBW3_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.090e-19
Identity = 38/50 (76.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 QVLNPAFDYIPPNLVDLYITNMGGLQPSYVYRLLAEYYHRDDLIISPSHE 150
            +VLNPA+DYIPP LVDLY+TN+GG QPSY+YRLLAEYYHRDD I++P  E
Sbjct:  347 EVLNPAYDYIPPELVDLYMTNIGGHQPSYIYRLLAEYYHRDDYILAPEFE 396
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BLAST of mRNA_F-distichus_contig105980.511.1 vs. uniprot
Match: A0A7S3XZZ5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZZ5_HETAK)

HSP 1 Score: 84.7 bits (208), Expect = 1.020e-18
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 QVLNPAFDYIPPNLVDLYITNMGGLQPSYVYRLLAEYYHRDDLIIS 138
            +VLNPA+DYIPP L+DLYITNMGG QPSY+YRLLAEYYH +D ++S
Sbjct:  194 EVLNPAYDYIPPELIDLYITNMGGHQPSYIYRLLAEYYHHEDSVLS 239
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BLAST of mRNA_F-distichus_contig105980.511.1 vs. uniprot
Match: B8C5F6_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5F6_THAPS)

HSP 1 Score: 76.3 bits (186), Expect = 6.970e-15
Identity = 30/42 (71.43%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 QVLNPAFDYIPPNLVDLYITNMGGLQPSYVYRLLAEYYHRDD 126
            + +NP  DYIPP L+DLY+TN+GG QPSY+YRLLAEYYH DD
Sbjct:  435 EFVNPVHDYIPPQLIDLYVTNIGGFQPSYIYRLLAEYYHSDD 476
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BLAST of mRNA_F-distichus_contig105980.511.1 vs. uniprot
Match: A0A7S2DRQ5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DRQ5_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.570e-14
Identity = 28/42 (66.67%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 QVLNPAFDYIPPNLVDLYITNMGGLQPSYVYRLLAEYYHRDD 126
            +VLNPA+D++PP L+ LY+TN GG QPSY+YRLLAE+YH  D
Sbjct:   91 EVLNPAYDFVPPELIALYVTNNGGYQPSYIYRLLAEFYHPSD 132
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BLAST of mRNA_F-distichus_contig105980.511.1 vs. uniprot
Match: UPI000901991A (translation initiation factor eIF-2B subunit beta isoform X4 n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI000901991A)

HSP 1 Score: 74.7 bits (182), Expect = 2.260e-14
Identity = 33/53 (62.26%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 QVLNPAFDYIPPNLVDLYITNMGGLQPSYVYRLLAEYYHRDDLIISPSHEQRA 159
            QV+NPAFDY+PPNLV L+IT+ GG  PSY+YRL+A+YY  DDL++    +QRA
Sbjct:  364 QVVNPAFDYVPPNLVSLFITDTGGHNPSYMYRLIADYYSADDLVV----QQRA 412
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BLAST of mRNA_F-distichus_contig105980.511.1 vs. uniprot
Match: UPI001CB9146D (translation initiation factor eIF-2B subunit beta n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB9146D)

HSP 1 Score: 74.7 bits (182), Expect = 2.270e-14
Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 QVLNPAFDYIPPNLVDLYITNMGGLQPSYVYRLLAEYYHRDDLIISPSH 147
             V+NPAFDY+PP LV L+IT+ GG  PSY+YRL+A+YY  DDL++ P H
Sbjct:  365 HVVNPAFDYVPPKLVSLFITDTGGHNPSYMYRLIADYYAADDLVLQPKH 413
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BLAST of mRNA_F-distichus_contig105980.511.1 vs. uniprot
Match: A0A7S3VT33_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VT33_DUNTE)

HSP 1 Score: 70.5 bits (171), Expect = 2.410e-14
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 QVLNPAFDYIPPNLVDLYITNMGGLQPSYVYRLLAEYYHRDDLIIS 138
             V NPAFDYIPP+L+ L+IT+ GG  PSYVYRLL EYY R+D ++S
Sbjct:   61 HVPNPAFDYIPPHLISLFITDTGGYTPSYVYRLLTEYYSREDYLLS 106
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105980.511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHV2_9PHAE3.190e-2693.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGR9_9PHAE1.850e-2593.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHD8_ECTSI5.840e-2592.16Eukaryotic translation initiation factor 2B beta s... [more]
A0A836CBW3_9STRA1.090e-1976.00Eukaryotic translation initiation factor 2B beta s... [more]
A0A7S3XZZ5_HETAK1.020e-1876.09Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
B8C5F6_THAPS6.970e-1571.43Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2DRQ5_9STRA1.570e-1466.67Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
UPI000901991A2.260e-1462.26translation initiation factor eIF-2B subunit beta ... [more]
UPI001CB9146D2.270e-1461.22translation initiation factor eIF-2B subunit beta ... [more]
A0A7S3VT33_DUNTE2.410e-1465.22Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105980contigF-distichus_contig105980:186..347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.1
Seed ortholog evalue1e-20
Seed eggNOG ortholog2880.D8LHD8
Preferred nameEIF2B2
KEGG koko:K03372,ko:K03754,ko:K19041
KEGG TC2.A.1.25
KEGG Pathwayko00604,ko01100,ko03013,map00604,map01100,map03013
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000166,GO:0001541,GO:0001558,GO:0001666,GO:0001882,GO:0001883,GO:0002181,GO:0002183,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005085,GO:0005488,GO:0005515,GO:0005524,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005851,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007166,GO:0007272,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007548,GO:0008135,GO:0008144,GO:0008150,GO:0008152,GO:0008361,GO:0008366,GO:0008406,GO:0008585,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009889,GO:0009987,GO:0010001,GO:0010033,GO:0010243,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0010720,GO:0010769,GO:0010770,GO:0010975,GO:0010976,GO:0014003,GO:0016043,GO:0017076,GO:0019001,GO:0019222,GO:0019538,GO:0019899,GO:0021537,GO:0021543,GO:0021761,GO:0021766,GO:0021782,GO:0022008,GO:0022414,GO:0022603,GO:0022604,GO:0023052,GO:0030154,GO:0030234,GO:0030307,GO:0030424,GO:0030516,GO:0030554,GO:0030900,GO:0031323,GO:0031326,GO:0031344,GO:0031346,GO:0032045,GO:0032268,GO:0032501,GO:0032502,GO:0032535,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0032991,GO:0033554,GO:0034248,GO:0034284,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036293,GO:0036294,GO:0040008,GO:0042063,GO:0042221,GO:0042552,GO:0042995,GO:0043005,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045137,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045773,GO:0045927,GO:0046545,GO:0046660,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048608,GO:0048638,GO:0048639,GO:0048699,GO:0048709,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050770,GO:0050772,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050851,GO:0050852,GO:0050896,GO:0051020,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051239,GO:0051240,GO:0051246,GO:0051716,GO:0051960,GO:0051962,GO:0060255,GO:0060284,GO:0060322,GO:0061387,GO:0061458,GO:0065007,GO:0065008,GO:0065009,GO:0070482,GO:0070887,GO:0071453,GO:0071456,GO:0071704,GO:0071840,GO:0080090,GO:0090066,GO:0097159,GO:0097367,GO:0097458,GO:0098772,GO:0120025,GO:0120035,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:2000026,GO:2000112
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG1184@1,KOG1465@2759
Ec32 ortholog descriptionInitiation factor 2B-related
Ec32 orthologEc-13_000580.1
EC2.3.2.27
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko03012,ko04121
Exons1
Model size162
Cds size162
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928986.3446286-CDS-F-distichus_contig105980:185..3471622928986.3446286-CDS-F-distichus_contig105980:185..347Fucus distichus monoicousCDSF-distichus_contig105980 186..347 +
1690885092.4964962-CDS-F-distichus_contig105980:185..3471690885092.4964962-CDS-F-distichus_contig105980:185..347Fucus distichus monoicousCDSF-distichus_contig105980 186..347 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105980.511.1prot_F-distichus_contig105980.511.1Fucus distichus monoicouspolypeptideF-distichus_contig105980 186..347 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig105980.511.1

>prot_F-distichus_contig105980.511.1 ID=prot_F-distichus_contig105980.511.1|Name=mRNA_F-distichus_contig105980.511.1|organism=Fucus distichus monoicous|type=polypeptide|length=54bp
QVLNPAFDYIPPNLVDLYITNMGGLQPSYVYRLLAEYYHRDDLIISPSHE
QRA*
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mRNA from alignment at F-distichus_contig105980:186..347+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig105980.511.1 ID=mRNA_F-distichus_contig105980.511.1|Name=mRNA_F-distichus_contig105980.511.1|organism=Fucus distichus monoicous|type=mRNA|length=162bp|location=Sequence derived from alignment at F-distichus_contig105980:186..347+ (Fucus distichus monoicous)
CAGGTTCTGAACCCAGCGTTCGACTATATTCCGCCGAACCTGGTGGACCT
CTACATCACCAACATGGGGGGGCTGCAGCCTTCGTACGTTTACAGACTAC
TTGCGGAGTACTACCACCGAGACGACCTCATCATTTCCCCATCCCACGAG
CAAAGGGCGTGA
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Coding sequence (CDS) from alignment at F-distichus_contig105980:186..347+

>mRNA_F-distichus_contig105980.511.1 ID=mRNA_F-distichus_contig105980.511.1|Name=mRNA_F-distichus_contig105980.511.1|organism=Fucus distichus monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at F-distichus_contig105980:186..347+ (Fucus distichus monoicous)
CAGGTTCTGAACCCAGCGTTCGACTATATTCCGCCGAACCTGGTGGACCT
CTACATCACCAACATGGGGGGGCTGCAGCCTTCGTACGTTTACAGACTAC
TTGCGGAGTACTACCACCGAGACGACCTCATCATTTCCCCATCCCACGAG
CAAAGGGCGTGACAGGTTCTGAACCCAGCGTTCGACTATATTCCGCCGAA
CCTGGTGGACCTCTACATCACCAACATGGGGGGGCTGCAGCCTTCGTACG
TTTACAGACTACTTGCGGAGTACTACCACCGAGACGACCTCATCATTTCC
CCATCCCACGAGCAAAGGGCGTGA
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