mRNA_F-distichus_contig104686.414.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig104686.414.1
Unique NamemRNA_F-distichus_contig104686.414.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig104686.414.1 vs. uniprot
Match: D8LQ23_ECTSI (Exostosin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ23_ECTSI)

HSP 1 Score: 276 bits (705), Expect = 3.420e-83
Identity = 133/211 (63.03%), Postives = 156/211 (73.93%), Query Frame = 1
Query:    1 RVNVYVYDD-PALDFSDLIDCYRE-RHGKSPWQDERADMAQDMGEIWLHRAMLDHPWRVLEPDKADVFYVPMYPVLSYKLMLGPDAKKCRGLTHIQRIKNAVLYLQNRSVYFQRFGGGDHVIVCAWWNCRSVFTPWQRMLLRRAVLGINERRKWWANWGCG-GRSITIPYTASSIITTPELFGGADPESRDIPFFFVGSTRKRPERENLKV 624
            +V+V+VYD  P LD S L+ CYR+ R G SPWQDERADMAQDMGEIWLHRAML HPWRV  P++AD+FYVPMYPVLS KL       +C G TH + I  +V YL   SVYF+RFGG DH +VCAWWNC+S   P  RMLLRR V+GINE+   W  WGCG  + +TIPYTASS++TT E+ GG   E RDIPFFFVG+ R RPER+NL V
Sbjct:  156 KVSVFVYDGVPELDHSWLVPCYRQVRDGVSPWQDERADMAQDMGEIWLHRAMLAHPWRVANPEEADLFYVPMYPVLSTKL----GNNRCGGKTHDELINTSVEYLALSSVYFRRFGGADHTLVCAWWNCKSALGPKPRMLLRRTVVGINEKMLEWTRWGCGLDKMVTIPYTASSVLTTSEMIGGRAAEDRDIPFFFVGTARGRPERQNLDV 362          
BLAST of mRNA_F-distichus_contig104686.414.1 vs. uniprot
Match: A0A6H5KWD0_9PHAE (Exostosin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWD0_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 2.950e-61
Identity = 90/160 (56.25%), Postives = 116/160 (72.50%), Query Frame = 1
Query:  148 MLDHPWRVLEPDKADVFYVPMYPVLSYKLMLGPDAKKCRGLTHIQRIKNAVLYLQNRSVYFQRFGGGDHVIVCAWWNCRSVFTPWQRMLLRRAVLGINERRKWWANWGCG-GRSITIPYTASSIITTPELFGGADPESRDIPFFFVGSTRKRPERENLKV 624
            ML HPWRVL+P++AD+FYVP+YPVLS+KL       +C GLTH + +  +V YL + S +F RFGG DH+++CAWW C     P  RMLLRRAV+GINER   W  WGCG  + +T+PYTA+S++TT ++ GG   E RDIPFFFVG+ R RPER+NL V
Sbjct:    1 MLSHPWRVLDPEEADLFYVPIYPVLSFKLATS----RCGGLTHNELMDASVEYLSSSSPFFNRFGGADHILMCAWWKCGEALGPKHRMLLRRAVVGINERLLRWTRWGCGRSKMVTVPYTANSVLTTSDMIGGRTAEDRDIPFFFVGTARHRPERKNLDV 156          
BLAST of mRNA_F-distichus_contig104686.414.1 vs. uniprot
Match: A0A6H5LR87_9PHAE (Exostosin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LR87_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 1.770e-59
Identity = 90/165 (54.55%), Postives = 116/165 (70.30%), Query Frame = 1
Query:  148 MLDHPWRVLEPDKADVFYVPMYPVLSYKLMLGPDA-----KKCRGLTHIQRIKNAVLYLQNRSVYFQRFGGGDHVIVCAWWNCRSVFTPWQRMLLRRAVLGINERRKWWANWGCGGRS-ITIPYTASSIITTPELFGGADPESRDIPFFFVGSTRKRPERENLKV 624
            ML HPWRVL+P++AD+FYVP+Y  LS KL           ++C GLTH + +  +V YL + S++F RFGG DH+++CAWW CR+   P  RMLLRR V+GINER   W  WGCG R  +T+PYTASS++ T ++ GG   E+RDIPFFFVG+ R RPERENL V
Sbjct:    1 MLFHPWRVLDPEEADLFYVPIYSALSSKLTEHSTIHLELRRRCGGLTHDELMDASVEYLSSSSLFFNRFGGADHILMCAWWGCRNGLGPKHRMLLRRTVVGINERVFKWTRWGCGPRKMVTVPYTASSVLATSDMIGGRTAEARDIPFFFVGTARGRPERENLDV 165          
BLAST of mRNA_F-distichus_contig104686.414.1 vs. uniprot
Match: A0A6H5JMN7_9PHAE (Exostosin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMN7_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 5.910e-42
Identity = 71/124 (57.26%), Postives = 90/124 (72.58%), Query Frame = 1
Query:  256 KCRGLTHIQRIKNAVLYLQNRSVYFQRFGGGDHVIVCAWWNCRSVFTPWQRMLLRRAVLGINERRKWWANWGCGGRS-ITIPYTASSIITTPELFGGADPESRDIPFFFVGSTRKRPERENLKV 624
            +C GLTH + +  +V YL + S++F RFGG DHV++CAWW CR+   P  RMLLRR V+GINER   W  WGCG R  +T+PYTASS++ T ++ GG   E+RDIPFFFVG+ R RPERENL V
Sbjct:    5 QCGGLTHDELMDASVDYLSSSSLFFNRFGGADHVLMCAWWGCRNGLGPKHRMLLRRTVVGINERVFLWTRWGCGPRKMVTVPYTASSVLATSDMIGGRTAEARDIPFFFVGTARGRPERENLDV 128          
BLAST of mRNA_F-distichus_contig104686.414.1 vs. uniprot
Match: A0A6H5KVI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI3_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.290e-12
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query:    1 RVNVYVYDD-PALDFSDLIDCYRERHGKSPWQDERADMAQDMGEIWLHRA 147
            RV V+VY+  P LD  +L+ CYR+ HG +PWQDER DMAQDMGEIW+HR+
Sbjct:  155 RVAVFVYEGVPELDHMELVQCYRDVHGVAPWQDERFDMAQDMGEIWMHRS 204          
BLAST of mRNA_F-distichus_contig104686.414.1 vs. uniprot
Match: A0A8J6CHB5_DIALT (Exostosin domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CHB5_DIALT)

HSP 1 Score: 72.8 bits (177), Expect = 1.900e-11
Identity = 59/196 (30.10%), Postives = 92/196 (46.94%), Query Frame = 1
Query:   13 YVYDDPALDFSDLIDCYRERHGKSPWQ-DERADMAQDMGEIWLHRAMLDHPWRVLEPDKADVFYVPMYPVLSYKLMLGPDAKKCRGLTHIQRIKNAVLYLQNRSVYFQRFGGGDHVIVCAWWNCRSVFTPWQRMLLRRAVLGINERRKWWANWGCGGRSITIPYTASSIITTPELFGGADPESRDIPFFFVGSTRK 597
            +VY   A +FS+L+ C+ +RH   PW  DE   M     EIW  + ++ HP RV +   A++F VP++P+LS KL+       C   TH +R++ A   L+  S ++QR  G  H +V A    +S      R  LR +++   E      +WG  G   T     ++   T     G   E R + F  V  T++
Sbjct:   59 FVYAHGAFNFSNLLGCFHKRHSCEPWACDEHPGMDHVAPEIWATQFLMHHPARVSQAMDAEIFLVPVWPLLS-KLV----GNACGQGTHDERMRKANAALRG-SAHWQRVPG-RHFVVAAGPRAQSALGDELRRSLRGSMIANEE------SWG--GLDWTSEPDTTAPAFTLRAADGEPGEGRMVDFQDVWGTQR 239          
BLAST of mRNA_F-distichus_contig104686.414.1 vs. uniprot
Match: A0A6H5L8I0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8I0_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 3.270e-9
Identity = 28/50 (56.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:    1 RVNVYVYDD-PALDFSDLIDCYRERH-GKSPWQDERADMAQDMGEIWLHR 144
            +V ++VY+  P LD ++L+ CYR  H G +PWQDER DMA++MGEIW+HR
Sbjct:  145 KVAIFVYEGVPELDHTELVQCYRSGHRGVAPWQDERNDMAENMGEIWMHR 194          
BLAST of mRNA_F-distichus_contig104686.414.1 vs. uniprot
Match: A0A7S2LEY5_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2LEY5_9DINO)

HSP 1 Score: 62.4 bits (150), Expect = 4.490e-8
Identity = 44/172 (25.58%), Postives = 77/172 (44.77%), Query Frame = 1
Query:  127 EIWLHRAMLDHPWRVLEPDKADVFYVPMYPVLSYKL-MLGPDAKKCRGLTHIQRIKNAVLY-----LQNRSVYFQRFGGGDHVIVCAWWNCRSVFTPWQRMLLRRAVLGINERRKWWANWGCGGRS-ITIPYTASSIITTPELFGGADPESRDIPFFFVGSTRKRPERENLK 621
            + W  +A L HPWRV +P++AD+F VP   +L++ +  +    ++C     +  + NA L+     +  +S +F+R+GG DHV VC+ + C      W+ +     +       +       G R  I   Y   + +  P   G +   +R   F  V S    PER + +
Sbjct:  107 DYWFLKAALHHPWRVSDPEEADLFVVPA--LLNFPMEQISFSRRQCC----VGDLCNAELFRYTDTMLAQSPWFKRYGGKDHVAVCSHYGCPGQLALWRNIQACNTISFEENSMR-------GDRCRIATTYVGRACVGAPSEHGNSTAIARQDTFVMVASMH--PERPSFR 263          
BLAST of mRNA_F-distichus_contig104686.414.1 vs. uniprot
Match: A0A7S3ZW87_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZW87_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 5.450e-7
Identity = 45/174 (25.86%), Postives = 75/174 (43.10%), Query Frame = 1
Query:   85 PWQDERADMAQDMGEIWLHRAMLDHPWRVLEPDKADVFYVPMYPVLSYKLMLGPDAKKCRGLTHIQRIKNAVLYLQNRSVYFQRFGGGDHVIVCAWWN---CRSVFTPWQRMLLRRAVLGINERRKWWANWGCGGRSITIPYTASSIITTPELFGGADP-ESRDIPFFFVGSTR 594
            P Q     +A+++ E+W+HRA+L+   R  +P+ A +F+VP Y  LS         K   G  H +R+   +  L++ S +FQR  G DHV   +  N    R +  P     L ++  G+ E    W        ++     A  ++    L G +    + +I  FF    R
Sbjct:   71 PQQRRHYKIAEELVEVWVHRALLNDKRRTTDPEAASLFFVPAYLSLS---------KNSDGQGHDERLSALIEELRS-SKWFQRHRGADHVFGYSSINPGVARQLLFPKLHAGLEQSYFGVFEMNPAWVGGDRKEETLRRMVPAPYVVDASRLAGTSTQLHNHEISVFFAAHRR 234          
BLAST of mRNA_F-distichus_contig104686.414.1 vs. uniprot
Match: A0A7J7L4N1_9MAGN (Exostosin domain-containing protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7L4N1_9MAGN)

HSP 1 Score: 57.0 bits (136), Expect = 4.810e-6
Identity = 57/222 (25.68%), Postives = 97/222 (43.69%), Query Frame = 1
Query:    4 VNVYVYDDPALDFSDLIDCYRERHGKSPWQDERADMAQDMGEIWLHRAMLDHPW---------RVLEPDKADVFYVPMYPVLSYKLM------LGPDAKKCRGLTHIQRIKNAVLYLQNRSVYFQRFGGGDHVIVCAWWNCRSVFTPWQRMLLRRAVLGINERRKWWANWGCGGRSITIPYTASSIITTPELFGGADPESRDIPFFFVGSTRKRPERENLKV 624
            V VY+YD P      +ID Y    G     D +    Q   E +L + ++D            RVL+PD+AD+FYVP +  LS  +       +G      RG+   + ++ +++      VY++R  G DHV +C   +  +++    R+  +  VL +++  +   +     + + +PY   S    P   G    E RD   FF+G+   R  +E  KV
Sbjct:   75 VRVYLYDLPKKFTFGVIDSYLSARGSGVDGDLKYPGNQHSAEWYLFKDLIDERSKGVRGKSIVRVLDPDEADLFYVPFFSSLSLVVNPIRPAGVGGIGGGGRGVYSDEEMQESLIEWLEGQVYWRRNNGWDHVFICQ--DPNALYKVIDRV--KNGVLLVSDFGRLRGDQASLVKDVILPY---SHRINP-FKGDVGIEGRDSLLFFMGN---RYRKEGGKV 285          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig104686.414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D8LQ23_ECTSI3.420e-8363.03Exostosin domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KWD0_9PHAE2.950e-6156.25Exostosin domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5LR87_9PHAE1.770e-5954.55Exostosin domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JMN7_9PHAE5.910e-4257.26Exostosin domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KVI3_9PHAE1.290e-1264.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J6CHB5_DIALT1.900e-1130.10Exostosin domain-containing protein n=1 Tax=Diacro... [more]
A0A6H5L8I0_9PHAE3.270e-956.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A7S2LEY5_9DINO4.490e-825.58Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A7S3ZW87_9STRA5.450e-725.86Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7J7L4N1_9MAGN4.810e-625.68Exostosin domain-containing protein n=1 Tax=Kingdo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig104686contigF-distichus_contig104686:806..1429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score279.6
Seed ortholog evalue1.2e-72
Seed eggNOG ortholog2880.D8LQ23
Hectar predicted targeting categoryother localisation
EggNOG free text desc.macromolecule glycosylation
EggNOG OGsKOG1021@1,KOG1021@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size624
Cds size624
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928966.2787008-CDS-F-distichus_contig104686:805..14291622928966.2787008-CDS-F-distichus_contig104686:805..1429Fucus distichus monoicousCDSF-distichus_contig104686 806..1429 -
1690885085.307781-CDS-F-distichus_contig104686:805..14291690885085.307781-CDS-F-distichus_contig104686:805..1429Fucus distichus monoicousCDSF-distichus_contig104686 806..1429 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig104686.414.1prot_F-distichus_contig104686.414.1Fucus distichus monoicouspolypeptideF-distichus_contig104686 806..1429 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig104686.414.1

>prot_F-distichus_contig104686.414.1 ID=prot_F-distichus_contig104686.414.1|Name=mRNA_F-distichus_contig104686.414.1|organism=Fucus distichus monoicous|type=polypeptide|length=208bp
RVNVYVYDDPALDFSDLIDCYRERHGKSPWQDERADMAQDMGEIWLHRAM
LDHPWRVLEPDKADVFYVPMYPVLSYKLMLGPDAKKCRGLTHIQRIKNAV
LYLQNRSVYFQRFGGGDHVIVCAWWNCRSVFTPWQRMLLRRAVLGINERR
KWWANWGCGGRSITIPYTASSIITTPELFGGADPESRDIPFFFVGSTRKR
PERENLKV
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mRNA from alignment at F-distichus_contig104686:806..1429-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig104686.414.1 ID=mRNA_F-distichus_contig104686.414.1|Name=mRNA_F-distichus_contig104686.414.1|organism=Fucus distichus monoicous|type=mRNA|length=624bp|location=Sequence derived from alignment at F-distichus_contig104686:806..1429- (Fucus distichus monoicous)
AGGGTCAACGTCTATGTCTATGACGATCCAGCGCTGGACTTCTCGGACCT GATAGACTGTTATAGGGAAAGGCACGGCAAATCACCTTGGCAGGATGAGC GAGCCGACATGGCCCAGGACATGGGGGAAATCTGGCTTCACCGGGCAATG CTGGACCATCCGTGGCGGGTGCTCGAACCGGACAAAGCGGACGTGTTCTA CGTCCCGATGTACCCGGTCCTGAGCTACAAGCTGATGCTGGGACCTGATG CTAAGAAGTGCCGCGGTCTGACCCATATTCAGCGGATCAAGAATGCCGTG CTATACCTGCAGAACAGGAGCGTGTATTTCCAACGCTTTGGTGGGGGCGA CCATGTGATTGTGTGTGCCTGGTGGAACTGCCGCAGCGTATTCACCCCGT GGCAAAGGATGCTGCTAAGAAGAGCCGTGCTCGGCATCAACGAACGGCGC AAGTGGTGGGCGAACTGGGGCTGTGGTGGGCGTTCAATCACCATTCCGTA CACGGCTAGTAGCATTATAACCACACCAGAGCTCTTCGGCGGGGCTGATC CCGAAAGCCGGGACATCCCGTTCTTCTTTGTCGGCAGCACGCGCAAACGA CCGGAGAGAGAAAACCTCAAGGTA
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Coding sequence (CDS) from alignment at F-distichus_contig104686:806..1429-

>mRNA_F-distichus_contig104686.414.1 ID=mRNA_F-distichus_contig104686.414.1|Name=mRNA_F-distichus_contig104686.414.1|organism=Fucus distichus monoicous|type=CDS|length=1248bp|location=Sequence derived from alignment at F-distichus_contig104686:806..1429- (Fucus distichus monoicous)
AGGGTCAACGTCTATGTCTATGACGATCCAGCGCTGGACTTCTCGGACCT
GATAGACTGTTATAGGGAAAGGCACGGCAAATCACCTTGGCAGGATGAGC
GAGCCGACATGGCCCAGGACATGGGGGAAATCTGGCTTCACCGGGCAATG
CTGGACCATCCGTGGCGGGTGCTCGAACCGGACAAAGCGGACGTGTTCTA
CGTCCCGATGTACCCGGTCCTGAGCTACAAGCTGATGCTGGGACCTGATG
CTAAGAAGTGCCGCGGTCTGACCCATATTCAGCGGATCAAGAATGCCGTG
CTATACCTGCAGAACAGGAGCGTGTATTTCCAACGCTTTGGTGGGGGCGA
CCATGTGATTGTGTGTGCCTGGTGGAACTGCCGCAGCGTATTCACCCCGT
GGCAAAGGATGCTGCTAAGAAGAGCCGTGCTCGGCATCAACGAACGGCGC
AAGTGGTGGGCGAACTGGGGCTGTGGTGGGCGTTCAATCACCATTCCGTA
CACGGCTAGTAGCATTATAACCACACCAGAGCTCTTCGGCGGGGCTGATC
CCGAAAGCCGGGACATCCCGTTCTTCTTTGTCGGCAGCACGCGCAAACGA
CCGGAGAGAGAAAACCTCAAGGTAAGGGTCAACGTCTATGTCTATGACGA
TCCAGCGCTGGACTTCTCGGACCTGATAGACTGTTATAGGGAAAGGCACG
GCAAATCACCTTGGCAGGATGAGCGAGCCGACATGGCCCAGGACATGGGG
GAAATCTGGCTTCACCGGGCAATGCTGGACCATCCGTGGCGGGTGCTCGA
ACCGGACAAAGCGGACGTGTTCTACGTCCCGATGTACCCGGTCCTGAGCT
ACAAGCTGATGCTGGGACCTGATGCTAAGAAGTGCCGCGGTCTGACCCAT
ATTCAGCGGATCAAGAATGCCGTGCTATACCTGCAGAACAGGAGCGTGTA
TTTCCAACGCTTTGGTGGGGGCGACCATGTGATTGTGTGTGCCTGGTGGA
ACTGCCGCAGCGTATTCACCCCGTGGCAAAGGATGCTGCTAAGAAGAGCC
GTGCTCGGCATCAACGAACGGCGCAAGTGGTGGGCGAACTGGGGCTGTGG
TGGGCGTTCAATCACCATTCCGTACACGGCTAGTAGCATTATAACCACAC
CAGAGCTCTTCGGCGGGGCTGATCCCGAAAGCCGGGACATCCCGTTCTTC
TTTGTCGGCAGCACGCGCAAACGACCGGAGAGAGAAAACCTCAAGGTA
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