mRNA_F-distichus_contig103963.350.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig103963.350.1
Unique NamemRNA_F-distichus_contig103963.350.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig103963.350.1 vs. uniprot
Match: D7G0D5_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0D5_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 1.260e-52
Identity = 82/117 (70.09%), Postives = 95/117 (81.20%), Query Frame = 1
Query:    1 IVAAQSGIYFPGLGYEAVPWYQQFDEFVAKNPVGLLQLVLFFAVMEGYYYPGEFWSGGGDREAGDLGLYLKKPTQEKLDQLRLSELKNGRLAIFAVAAFTSEHWISGSVPALSGQGF 351
            I AAQSG  FPGLGY+AVPWY QF EF +KNP GL QL+LFFAV EG  Y G+FWSGGG+REAGDLGLYLKKP +  +++LRL ELKNGRLA+ +VAA  SEHWI G+VP L GQG+
Sbjct:  100 IWAAQSGFVFPGLGYDAVPWYDQFHEFASKNPGGLAQLMLFFAVAEGATYCGDFWSGGGEREAGDLGLYLKKPGKAAVEKLRLQELKNGRLAMISVAACASEHWIKGAVPFLEGQGY 216          
BLAST of mRNA_F-distichus_contig103963.350.1 vs. uniprot
Match: A0A836CLY0_9STRA (Light harvesting complex protein 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLY0_9STRA)

HSP 1 Score: 107 bits (268), Expect = 3.280e-27
Identity = 55/118 (46.61%), Postives = 75/118 (63.56%), Query Frame = 1
Query:   16 SGIYFPGLGYEAVPWYQQFDEFVAKNPVGLLQLVLFFAVMEGYY--YPGEFWSGGGDREAGDLGL----YLKKPTQEKLDQLRLSELKNGRLAIFAVAAFTSEHWISGSVPALSGQGF 351
            +GI+ PGL Y    WY  F EF AKNP+GL Q++    + EG+Y    G  W+G G R  G+LG      +K  ++  ++ ++L E+KNGRLA+ A+A F SEH+I GSVP LSGQGF
Sbjct:   63 AGIHIPGLDY-TTDWYNSFPEFAAKNPLGLAQVMAGLTIWEGHYGTEAGLMWTGEGTRNPGELGFDPLNLMKGKSEADVNTMKLKEIKNGRLAMIAMAGFASEHFIPGSVPLLSGQGF 179          
BLAST of mRNA_F-distichus_contig103963.350.1 vs. uniprot
Match: A0A7S2SV94_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV94_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.340e-26
Identity = 56/120 (46.67%), Postives = 76/120 (63.33%), Query Frame = 1
Query:    4 VAAQSGIYFPG-LG---YEAVPWYQQFDEFVAKNPVGLLQLVLFFAVMEGYYYPGEFWSGGGDREAGDLGLYL---KKPTQEKLDQLRLSELKNGRLAIFAVAAFTSEHWISGSVPALSG 342
            +AA +G+ FPG LG   YE   WY      V+ N  G+ QL +  A++EG  +PGEFW+GGG+REAGDLG       K     LD++++SELKNGRLA+ A+A   +EH + GSVP + G
Sbjct:   96 MAAATGVVFPGDLGGFHYEPCAWYDGLASAVSTNSFGMAQLFIAIALVEGNAFPGEFWTGGGEREAGDLGFLPFGDAKKNNRDLDEMKISELKNGRLAMIAMAGLFAEHQLPGSVPLIPG 215          
BLAST of mRNA_F-distichus_contig103963.350.1 vs. uniprot
Match: A0A7S2BU75_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BU75_9STRA)

HSP 1 Score: 103 bits (256), Expect = 7.490e-25
Identity = 56/116 (48.28%), Postives = 73/116 (62.93%), Query Frame = 1
Query:   10 AQSGIYFPG-LG---YEAVPWYQQFDEFVAKNPVGLLQLVLFFAVMEGYYYPGEFWSGGGDREAGDLGLYLKKPTQEK---LDQLRLSELKNGRLAIFAVAAFTSEHWISGSVPAL 336
            A +G+ FPG LG   YEA  WY      ++ N  G+ QL++   ++EG+ +P EFW GGGDREAGDLG        +     D+LRLSELKNGRLA+ A+A F S+H + GSVP L
Sbjct:  113 AANGVVFPGDLGGFHYEACAWYDGLASGLSTNSFGMAQLLMTIGLIEGFSFPAEFWVGGGDREAGDLGFLPFGDAAKNGRDFDELRLSELKNGRLAMIAMAGFFSQHQLPGSVPFL 228          
BLAST of mRNA_F-distichus_contig103963.350.1 vs. uniprot
Match: Q9ATC4_VAULI (Light harvesting complex protein 2 (Fragment) n=4 Tax=Eukaryota TaxID=2759 RepID=Q9ATC4_VAULI)

HSP 1 Score: 100 bits (248), Expect = 1.580e-24
Identity = 54/118 (45.76%), Postives = 74/118 (62.71%), Query Frame = 1
Query:   16 SGIYFPGLGYEAVPWYQQFDEFVAKNPVGLLQLVLFFAVMEGYY--YPGEFWSGGGDREAGDLGLYL----KKPTQEKLDQLRLSELKNGRLAIFAVAAFTSEHWISGSVPALSGQGF 351
            +GI+ P LGY +  WY  F EFVAKNP+GL Q++    + EG++    G  W+G  +R+ G L   L    K   + +L  ++L E+KNGRLA+ A+AAF SEH+ISGSVP L   GF
Sbjct:   34 AGIHIPNLGYTS-DWYNSFPEFVAKNPLGLAQVIAGLTIWEGFHGTETGLMWTGEANRKPGHLNFDLLNLMKGKNESQLKSIQLKEIKNGRLAMVAMAAFASEHFISGSVPLLDLFGF 150          
BLAST of mRNA_F-distichus_contig103963.350.1 vs. uniprot
Match: I2CR44_NANGC (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CR44_NANGC)

HSP 1 Score: 99.4 bits (246), Expect = 1.050e-23
Identity = 53/116 (45.69%), Postives = 71/116 (61.21%), Query Frame = 1
Query:    1 IVAAQSGIYFPGLGYEAVPWYQQFDEFVAKNPVGLLQLVLFFAVMEGYYYPGEFWSGGGDREAGDLGL----YLKKPTQEKLDQLRLSELKNGRLAIFAVAAFTSEHWISGSVPAL 336
            IV    G+Y P    E   + Q F + +  NP+G+ Q+ L  A++EG+YY G+FW+GGGDRE G  G     + K  ++  L  +RL ELKNGRLA+ A+AAF SE  I GSVP L
Sbjct:   74 IVPGSLGVYVPTYPQEP-DFTQAFYKALQNNPLGMAQIALAIAIIEGHYYAGDFWTGGGDREVGAFGFDPLGFSKGKSEAALKSMRLKELKNGRLAMIAMAAFASEKLIPGSVPLL 188          
BLAST of mRNA_F-distichus_contig103963.350.1 vs. uniprot
Match: A0A7S0NXV2_9EUKA (Hypothetical protein n=2 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NXV2_9EUKA)

HSP 1 Score: 87.0 bits (214), Expect = 1.410e-18
Identity = 51/120 (42.50%), Postives = 67/120 (55.83%), Query Frame = 1
Query:    1 IVAAQSGIYFPGLGYEAVPWYQQFDEFVAKNPVGLLQLVLFFAVMEGYYYPGEF--WSGG-GDREAGDLG---LYLKKPTQEKLDQLRLSELKNGRLAIFAVAAFTSEHWISGSVPALSG 342
            I+A   G++ PG  +    W        AKNP G+LQ+V    V+EG    G F  W G    RE G++G   L L  PT+   D++RL ELKNGR+A+ AVA F + H+I GSVP L G
Sbjct:  115 ILATNGGLHLPGEFWTDSDWTSALGSTFAKNPSGMLQIVAAIGVIEGTSSKGLFDLWLGNTATREPGNIGFDPLKLMPPTKVAADKMRLKELKNGRMAMIAVAGFAANHFIPGSVPGLQG 234          
BLAST of mRNA_F-distichus_contig103963.350.1 vs. uniprot
Match: A0A6V1SPG2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SPG2_HETAK)

HSP 1 Score: 83.2 bits (204), Expect = 2.390e-17
Identity = 47/120 (39.17%), Postives = 63/120 (52.50%), Query Frame = 1
Query:    1 IVAAQSGIYFPGLGYEAVPWYQQFDEFVAKNPVGLLQLVLFFAVMEGYYYPGEFWSGGGDREAGDLGL----YLKKPTQEKLDQLRLSELKNGRLAIFAVAAFTSEHWISGSVPALSGQG 348
            + A   G   PG   E   W   + E + KNP+  +Q++LF  ++EG  YPGE W G G R  G LG     + KK    ++ QL+  ELKNGR A+ A+AA+ S   I GSVP     G
Sbjct:   90 VFATSIGARIPGYPVETKDWTAAYGEMIEKNPLAFVQILLFIGIIEGVTYPGELWFGEG-RAPGALGYDPLGFAKKDKTPEVTQLK--ELKNGRAAMIAMAAYASHELIPGSVPLYDALG 206          
BLAST of mRNA_F-distichus_contig103963.350.1 vs. uniprot
Match: A0A7S3TCZ6_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TCZ6_9SPIT)

HSP 1 Score: 80.9 bits (198), Expect = 1.090e-16
Identity = 52/120 (43.33%), Postives = 71/120 (59.17%), Query Frame = 1
Query:    4 VAAQSGIYFPGLGYEAVP-WYQQFDE-FVAKNP-VGLLQLVLFFAVMEGYYYPGEFWSGGGDREAGDLG---LYLKKPTQEKLDQLRLSELKNGRLAIFAVAAFTSEHWISGSVPALSGQ 345
            +  QS +  PG  Y A P W +     + +K P +G++Q+ +FF ++EG ++P   W G  DRE GDLG   L L K     L + +LSELKNGRLA+ A AAF + H I G+VP LSG 
Sbjct:   16 IVVQSIVQIPG--YPAEPDWTKALAACYASKVPTLGIVQISVFFMLVEGRFFPENAWIGQMDREPGDLGFDPLKLSKKPGFDLKKKQLSELKNGRLAMIACAAFGANHVIPGAVPLLSGS 133          
BLAST of mRNA_F-distichus_contig103963.350.1 vs. uniprot
Match: Q5ENN0_HETTR (Chloroplast light harvesting complex protein n=1 Tax=Heterocapsa triquetra TaxID=66468 RepID=Q5ENN0_HETTR)

HSP 1 Score: 83.6 bits (205), Expect = 2.190e-16
Identity = 52/118 (44.07%), Postives = 68/118 (57.63%), Query Frame = 1
Query:    4 VAAQSGIYFPGLGYEAVPWYQQFDE-FVAKNP-VGLLQLVLFFAVMEGYYYPGEFWSGGGDREAGDLG---LYLKKPTQEKLDQLRLSELKNGRLAIFAVAAFTSEHWISGSVPALSG 342
            +  QS +  PG   E   W       + +K P +GL+Q+ +FF ++EG Y+P   W G  DRE GDLG   L L K     L + +L ELKNGRLA+ AVAAF + H I GSVP L+G
Sbjct:  168 IVVQSIVQIPGYPQEP-DWLNALSACYASKVPTLGLVQMSVFFMLVEGRYFPENAWIGQMDREPGDLGFDPLKLTKKPGFDLKKAQLQELKNGRLAMIAVAAFAANHVIPGSVPLLTG 284          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig103963.350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7G0D5_ECTSI1.260e-5270.09Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A836CLY0_9STRA3.280e-2746.61Light harvesting complex protein 2 n=1 Tax=Tribone... [more]
A0A7S2SV94_9STRA2.340e-2646.67Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2BU75_9STRA7.490e-2548.28Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
Q9ATC4_VAULI1.580e-2445.76Light harvesting complex protein 2 (Fragment) n=4 ... [more]
I2CR44_NANGC1.050e-2345.69Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S0NXV2_9EUKA1.410e-1842.50Hypothetical protein n=2 Tax=Calcidiscus leptoporu... [more]
A0A6V1SPG2_HETAK2.390e-1739.17Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3TCZ6_9SPIT1.090e-1643.33Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
Q5ENN0_HETTR2.190e-1644.07Chloroplast light harvesting complex protein n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig103963contigF-distichus_contig103963:140..1659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score175.3
Seed ortholog evalue1.7e-41
Seed eggNOG ortholog2880.D7G0D5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.light harvesting protein
EggNOG OGs2CDPH@1,2SBCH@2759
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-02_000850.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size354
Cds size354
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig103963.350.1prot_F-distichus_contig103963.350.1Fucus distichus monoicouspolypeptideF-distichus_contig103963 140..1659 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928958.916283-CDS-F-distichus_contig103963:139..2751622928958.916283-CDS-F-distichus_contig103963:139..275Fucus distichus monoicousCDSF-distichus_contig103963 140..275 -
1690885082.338179-CDS-F-distichus_contig103963:139..2751690885082.338179-CDS-F-distichus_contig103963:139..275Fucus distichus monoicousCDSF-distichus_contig103963 140..275 -
1622928958.929998-CDS-F-distichus_contig103963:594..7011622928958.929998-CDS-F-distichus_contig103963:594..701Fucus distichus monoicousCDSF-distichus_contig103963 595..701 -
1690885082.3524005-CDS-F-distichus_contig103963:594..7011690885082.3524005-CDS-F-distichus_contig103963:594..701Fucus distichus monoicousCDSF-distichus_contig103963 595..701 -
1622928958.9435143-CDS-F-distichus_contig103963:1548..16591622928958.9435143-CDS-F-distichus_contig103963:1548..1659Fucus distichus monoicousCDSF-distichus_contig103963 1549..1659 -
1690885082.3603542-CDS-F-distichus_contig103963:1548..16591690885082.3603542-CDS-F-distichus_contig103963:1548..1659Fucus distichus monoicousCDSF-distichus_contig103963 1549..1659 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig103963.350.1

>prot_F-distichus_contig103963.350.1 ID=prot_F-distichus_contig103963.350.1|Name=mRNA_F-distichus_contig103963.350.1|organism=Fucus distichus monoicous|type=polypeptide|length=118bp
IVAAQSGIYFPGLGYEAVPWYQQFDEFVAKNPVGLLQLVLFFAVMEGYYY
PGEFWSGGGDREAGDLGLYLKKPTQEKLDQLRLSELKNGRLAIFAVAAFT
SEHWISGSVPALSGQGF*
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mRNA from alignment at F-distichus_contig103963:140..1659-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig103963.350.1 ID=mRNA_F-distichus_contig103963.350.1|Name=mRNA_F-distichus_contig103963.350.1|organism=Fucus distichus monoicous|type=mRNA|length=1520bp|location=Sequence derived from alignment at F-distichus_contig103963:140..1659- (Fucus distichus monoicous)
ATCGTAGCCGCTCAGTCGGGGATCTACTTTCCCGGACTGGGTTACGAAGC GGTGCCGTGGTACCAACAGTTCGACGAATTCGTGGCCAAGAACCCCGTGG GACTCCTCCAGGTACCACATGACATGACATGGCAGTTACTACTGTACTGT ACACCCTATATTGTACGAAGTATTCTGGTATACCTGGTATCGTATATGGT GCACTTGGTTATTATTAATACCGAATATTGTGTGCTACCACCCTTGTTGA CCTTCGAGTAAAAACCGTCGTCTTACACCTAAGGGCTTTCCTTTAGTCTG GTCTCGTCTGGTTCGGGAGGGAGGCCGTCTCTCTCTCTCTCTCAGGAAAC GCGAGATCAGATATGATAGCTCTACTGCTGTAACGGTTTTTACTGCTTTA GGTATATGTTCCAAGGGGGGGTGCAAGCAAGCCCTCCGCCTCTACCGTCT ACCCTCTTTGCCCTTGCTTTTTTCCCTCTCCACCATTGACGTGACACGGC AAGCTCTAACACCCGCGTCCGCTCTTGCTCTAGCTGCTTGGCCGTTCAAG GCAACCATTGATAGGGGACAGCCCGTCACGCGCCAAGGGTGCCGTAGGGT AAAGAAACCCAACAAGAGTCCCTACTTGCCGGTCGCCACCGAGGCAACGG GGCGTGGTTTTTCATCCACTCTTATCGCCGTTTACGCTTTACTCCCGTGA AAAGAGCAAGCCCTTGCACGGAAATGGATGATGATGTCACGTACATGTGT TTGCACCAAACCCGTCTCTCCCCTTACGCAAGGGGGCCATCGATCAGTCC CATTGAAAGTCTCTTGTTTTTTGAATGGAAGAGTTGCCATATAGAGCAAT GATGTTAGACCTCGCTGCGCCCCATCCTCAAGCACGCTTGGCATCCACGC GCTTACTTTTGTGCTCCCCCTTTTATCCCCTCTCCCCCGCAAAAAAACGC CTCTACAGCTTGTACTGTTCTTCGCAGTGATGGAGGGATACTACTACCCC GGCGAGTTCTGGAGCGGGGGAGGAGACCGCGAAGCGGGCGACTTGGGTCT CTACTTAAAGAAGCCGTAAGTGTGTCTCCCCCTGTGCCGTCTCCTTACGG CCTACAGCAATATTTAGTACGAGTAGCATAGTTGAAACTGCACTGAAGAG CGTGCGCTGTTTGATGCTTGGCTGAATGTGCGCCAGCCTCGCGCTGACGT GACGCGCTCGTTGGCTCGACCTATTATTGCCCGTTTTGCAGTCGTCCTCC GGCCTTGTGCCTCCACCGGTACGGCGTGCAGATTCATTTATCATCTCTCT AACCTTTGGGGGGGGTGGGGGTCCCGTTTGCCTGCGTTCTTTGACTGCCG TTGTTGACCATGACCATGGTCACCATGGTAACAGAACTCAAGAGAAGCTC GATCAGCTCAGGCTCTCAGAGCTGAAGAACGGCCGCCTGGCCATTTTCGC TGTCGCAGCGTTCACCTCCGAGCACTGGATCTCGGGCTCCGTGCCCGCTC TCTCCGGACAGGGCTTCTAA
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Coding sequence (CDS) from alignment at F-distichus_contig103963:140..1659-

>mRNA_F-distichus_contig103963.350.1 ID=mRNA_F-distichus_contig103963.350.1|Name=mRNA_F-distichus_contig103963.350.1|organism=Fucus distichus monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at F-distichus_contig103963:140..1659- (Fucus distichus monoicous)
ATCGTAGCCGCTCAGTCGGGGATCTACTTTCCCGGACTGGGTTACGAAGC
GGTGCCGTGGTACCAACAGTTCGACGAATTCGTGGCCAAGAACCCCGTGG
GACTCCTCCAGATCGTAGCCGCTCAGTCGGGGATCTACTTTCCCGGACTG
GGTTACGAAGCGGTGCCGTGGTACCAACAGTTCGACGAATTCGTGGCCAA
GAACCCCGTGGGACTCCTCCAGCTTGTACTGTTCTTCGCAGTGATGGAGG
GATACTACTACCCCGGCGAGTTCTGGAGCGGGGGAGGAGACCGCGAAGCG
GGCGACTTGGGTCTCTACTTAAAGAAGCCCTTGTACTGTTCTTCGCAGTG
ATGGAGGGATACTACTACCCCGGCGAGTTCTGGAGCGGGGGAGGAGACCG
CGAAGCGGGCGACTTGGGTCTCTACTTAAAGAAGCCAACTCAAGAGAAGC
TCGATCAGCTCAGGCTCTCAGAGCTGAAGAACGGCCGCCTGGCCATTTTC
GCTGTCGCAGCGTTCACCTCCGAGCACTGGATCTCGGGCTCCGTGCCCGC
TCTCTCCGGACAGGGCTTCTAAAACTCAAGAGAAGCTCGATCAGCTCAGG
CTCTCAGAGCTGAAGAACGGCCGCCTGGCCATTTTCGCTGTCGCAGCGTT
CACCTCCGAGCACTGGATCTCGGGCTCCGTGCCCGCTCTCTCCGGACAGG
GCTTCTAA
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