mRNA_F-distichus_contig103963.350.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig103963.350.1 vs. uniprot
Match: D7G0D5_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0D5_ECTSI) HSP 1 Score: 173 bits (439), Expect = 1.260e-52 Identity = 82/117 (70.09%), Postives = 95/117 (81.20%), Query Frame = 1
Query: 1 IVAAQSGIYFPGLGYEAVPWYQQFDEFVAKNPVGLLQLVLFFAVMEGYYYPGEFWSGGGDREAGDLGLYLKKPTQEKLDQLRLSELKNGRLAIFAVAAFTSEHWISGSVPALSGQGF 351
I AAQSG FPGLGY+AVPWY QF EF +KNP GL QL+LFFAV EG Y G+FWSGGG+REAGDLGLYLKKP + +++LRL ELKNGRLA+ +VAA SEHWI G+VP L GQG+
Sbjct: 100 IWAAQSGFVFPGLGYDAVPWYDQFHEFASKNPGGLAQLMLFFAVAEGATYCGDFWSGGGEREAGDLGLYLKKPGKAAVEKLRLQELKNGRLAMISVAACASEHWIKGAVPFLEGQGY 216
BLAST of mRNA_F-distichus_contig103963.350.1 vs. uniprot
Match: A0A836CLY0_9STRA (Light harvesting complex protein 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLY0_9STRA) HSP 1 Score: 107 bits (268), Expect = 3.280e-27 Identity = 55/118 (46.61%), Postives = 75/118 (63.56%), Query Frame = 1
Query: 16 SGIYFPGLGYEAVPWYQQFDEFVAKNPVGLLQLVLFFAVMEGYY--YPGEFWSGGGDREAGDLGL----YLKKPTQEKLDQLRLSELKNGRLAIFAVAAFTSEHWISGSVPALSGQGF 351
+GI+ PGL Y WY F EF AKNP+GL Q++ + EG+Y G W+G G R G+LG +K ++ ++ ++L E+KNGRLA+ A+A F SEH+I GSVP LSGQGF
Sbjct: 63 AGIHIPGLDY-TTDWYNSFPEFAAKNPLGLAQVMAGLTIWEGHYGTEAGLMWTGEGTRNPGELGFDPLNLMKGKSEADVNTMKLKEIKNGRLAMIAMAGFASEHFIPGSVPLLSGQGF 179
BLAST of mRNA_F-distichus_contig103963.350.1 vs. uniprot
Match: A0A7S2SV94_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV94_9STRA) HSP 1 Score: 106 bits (265), Expect = 2.340e-26 Identity = 56/120 (46.67%), Postives = 76/120 (63.33%), Query Frame = 1
Query: 4 VAAQSGIYFPG-LG---YEAVPWYQQFDEFVAKNPVGLLQLVLFFAVMEGYYYPGEFWSGGGDREAGDLGLYL---KKPTQEKLDQLRLSELKNGRLAIFAVAAFTSEHWISGSVPALSG 342
+AA +G+ FPG LG YE WY V+ N G+ QL + A++EG +PGEFW+GGG+REAGDLG K LD++++SELKNGRLA+ A+A +EH + GSVP + G
Sbjct: 96 MAAATGVVFPGDLGGFHYEPCAWYDGLASAVSTNSFGMAQLFIAIALVEGNAFPGEFWTGGGEREAGDLGFLPFGDAKKNNRDLDEMKISELKNGRLAMIAMAGLFAEHQLPGSVPLIPG 215
BLAST of mRNA_F-distichus_contig103963.350.1 vs. uniprot
Match: A0A7S2BU75_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BU75_9STRA) HSP 1 Score: 103 bits (256), Expect = 7.490e-25 Identity = 56/116 (48.28%), Postives = 73/116 (62.93%), Query Frame = 1
Query: 10 AQSGIYFPG-LG---YEAVPWYQQFDEFVAKNPVGLLQLVLFFAVMEGYYYPGEFWSGGGDREAGDLGLYLKKPTQEK---LDQLRLSELKNGRLAIFAVAAFTSEHWISGSVPAL 336
A +G+ FPG LG YEA WY ++ N G+ QL++ ++EG+ +P EFW GGGDREAGDLG + D+LRLSELKNGRLA+ A+A F S+H + GSVP L
Sbjct: 113 AANGVVFPGDLGGFHYEACAWYDGLASGLSTNSFGMAQLLMTIGLIEGFSFPAEFWVGGGDREAGDLGFLPFGDAAKNGRDFDELRLSELKNGRLAMIAMAGFFSQHQLPGSVPFL 228
BLAST of mRNA_F-distichus_contig103963.350.1 vs. uniprot
Match: Q9ATC4_VAULI (Light harvesting complex protein 2 (Fragment) n=4 Tax=Eukaryota TaxID=2759 RepID=Q9ATC4_VAULI) HSP 1 Score: 100 bits (248), Expect = 1.580e-24 Identity = 54/118 (45.76%), Postives = 74/118 (62.71%), Query Frame = 1
Query: 16 SGIYFPGLGYEAVPWYQQFDEFVAKNPVGLLQLVLFFAVMEGYY--YPGEFWSGGGDREAGDLGLYL----KKPTQEKLDQLRLSELKNGRLAIFAVAAFTSEHWISGSVPALSGQGF 351
+GI+ P LGY + WY F EFVAKNP+GL Q++ + EG++ G W+G +R+ G L L K + +L ++L E+KNGRLA+ A+AAF SEH+ISGSVP L GF
Sbjct: 34 AGIHIPNLGYTS-DWYNSFPEFVAKNPLGLAQVIAGLTIWEGFHGTETGLMWTGEANRKPGHLNFDLLNLMKGKNESQLKSIQLKEIKNGRLAMVAMAAFASEHFISGSVPLLDLFGF 150
BLAST of mRNA_F-distichus_contig103963.350.1 vs. uniprot
Match: I2CR44_NANGC (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CR44_NANGC) HSP 1 Score: 99.4 bits (246), Expect = 1.050e-23 Identity = 53/116 (45.69%), Postives = 71/116 (61.21%), Query Frame = 1
Query: 1 IVAAQSGIYFPGLGYEAVPWYQQFDEFVAKNPVGLLQLVLFFAVMEGYYYPGEFWSGGGDREAGDLGL----YLKKPTQEKLDQLRLSELKNGRLAIFAVAAFTSEHWISGSVPAL 336
IV G+Y P E + Q F + + NP+G+ Q+ L A++EG+YY G+FW+GGGDRE G G + K ++ L +RL ELKNGRLA+ A+AAF SE I GSVP L
Sbjct: 74 IVPGSLGVYVPTYPQEP-DFTQAFYKALQNNPLGMAQIALAIAIIEGHYYAGDFWTGGGDREVGAFGFDPLGFSKGKSEAALKSMRLKELKNGRLAMIAMAAFASEKLIPGSVPLL 188
BLAST of mRNA_F-distichus_contig103963.350.1 vs. uniprot
Match: A0A7S0NXV2_9EUKA (Hypothetical protein n=2 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NXV2_9EUKA) HSP 1 Score: 87.0 bits (214), Expect = 1.410e-18 Identity = 51/120 (42.50%), Postives = 67/120 (55.83%), Query Frame = 1
Query: 1 IVAAQSGIYFPGLGYEAVPWYQQFDEFVAKNPVGLLQLVLFFAVMEGYYYPGEF--WSGG-GDREAGDLG---LYLKKPTQEKLDQLRLSELKNGRLAIFAVAAFTSEHWISGSVPALSG 342
I+A G++ PG + W AKNP G+LQ+V V+EG G F W G RE G++G L L PT+ D++RL ELKNGR+A+ AVA F + H+I GSVP L G
Sbjct: 115 ILATNGGLHLPGEFWTDSDWTSALGSTFAKNPSGMLQIVAAIGVIEGTSSKGLFDLWLGNTATREPGNIGFDPLKLMPPTKVAADKMRLKELKNGRMAMIAVAGFAANHFIPGSVPGLQG 234
BLAST of mRNA_F-distichus_contig103963.350.1 vs. uniprot
Match: A0A6V1SPG2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SPG2_HETAK) HSP 1 Score: 83.2 bits (204), Expect = 2.390e-17 Identity = 47/120 (39.17%), Postives = 63/120 (52.50%), Query Frame = 1
Query: 1 IVAAQSGIYFPGLGYEAVPWYQQFDEFVAKNPVGLLQLVLFFAVMEGYYYPGEFWSGGGDREAGDLGL----YLKKPTQEKLDQLRLSELKNGRLAIFAVAAFTSEHWISGSVPALSGQG 348
+ A G PG E W + E + KNP+ +Q++LF ++EG YPGE W G G R G LG + KK ++ QL+ ELKNGR A+ A+AA+ S I GSVP G
Sbjct: 90 VFATSIGARIPGYPVETKDWTAAYGEMIEKNPLAFVQILLFIGIIEGVTYPGELWFGEG-RAPGALGYDPLGFAKKDKTPEVTQLK--ELKNGRAAMIAMAAYASHELIPGSVPLYDALG 206
BLAST of mRNA_F-distichus_contig103963.350.1 vs. uniprot
Match: A0A7S3TCZ6_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TCZ6_9SPIT) HSP 1 Score: 80.9 bits (198), Expect = 1.090e-16 Identity = 52/120 (43.33%), Postives = 71/120 (59.17%), Query Frame = 1
Query: 4 VAAQSGIYFPGLGYEAVP-WYQQFDE-FVAKNP-VGLLQLVLFFAVMEGYYYPGEFWSGGGDREAGDLG---LYLKKPTQEKLDQLRLSELKNGRLAIFAVAAFTSEHWISGSVPALSGQ 345
+ QS + PG Y A P W + + +K P +G++Q+ +FF ++EG ++P W G DRE GDLG L L K L + +LSELKNGRLA+ A AAF + H I G+VP LSG
Sbjct: 16 IVVQSIVQIPG--YPAEPDWTKALAACYASKVPTLGIVQISVFFMLVEGRFFPENAWIGQMDREPGDLGFDPLKLSKKPGFDLKKKQLSELKNGRLAMIACAAFGANHVIPGAVPLLSGS 133
BLAST of mRNA_F-distichus_contig103963.350.1 vs. uniprot
Match: Q5ENN0_HETTR (Chloroplast light harvesting complex protein n=1 Tax=Heterocapsa triquetra TaxID=66468 RepID=Q5ENN0_HETTR) HSP 1 Score: 83.6 bits (205), Expect = 2.190e-16 Identity = 52/118 (44.07%), Postives = 68/118 (57.63%), Query Frame = 1
Query: 4 VAAQSGIYFPGLGYEAVPWYQQFDE-FVAKNP-VGLLQLVLFFAVMEGYYYPGEFWSGGGDREAGDLG---LYLKKPTQEKLDQLRLSELKNGRLAIFAVAAFTSEHWISGSVPALSG 342
+ QS + PG E W + +K P +GL+Q+ +FF ++EG Y+P W G DRE GDLG L L K L + +L ELKNGRLA+ AVAAF + H I GSVP L+G
Sbjct: 168 IVVQSIVQIPGYPQEP-DWLNALSACYASKVPTLGLVQMSVFFMLVEGRYFPENAWIGQMDREPGDLGFDPLKLTKKPGFDLKKAQLQELKNGRLAMIAVAAFAANHVIPGSVPLLTG 284 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig103963.350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig103963.350.1 >prot_F-distichus_contig103963.350.1 ID=prot_F-distichus_contig103963.350.1|Name=mRNA_F-distichus_contig103963.350.1|organism=Fucus distichus monoicous|type=polypeptide|length=118bp IVAAQSGIYFPGLGYEAVPWYQQFDEFVAKNPVGLLQLVLFFAVMEGYYYback to top mRNA from alignment at F-distichus_contig103963:140..1659- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig103963.350.1 ID=mRNA_F-distichus_contig103963.350.1|Name=mRNA_F-distichus_contig103963.350.1|organism=Fucus distichus monoicous|type=mRNA|length=1520bp|location=Sequence derived from alignment at F-distichus_contig103963:140..1659- (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig103963:140..1659- >mRNA_F-distichus_contig103963.350.1 ID=mRNA_F-distichus_contig103963.350.1|Name=mRNA_F-distichus_contig103963.350.1|organism=Fucus distichus monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at F-distichus_contig103963:140..1659- (Fucus distichus monoicous)back to top |