mRNA_F-distichus_contig103887.346.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig103887.346.1
Unique NamemRNA_F-distichus_contig103887.346.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig103887.346.1 vs. uniprot
Match: D8LRZ5_ECTSI (DNA gyrase subunit B n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRZ5_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 8.810e-40
Identity = 73/78 (93.59%), Postives = 75/78 (96.15%), Query Frame = 1 
Query:    1 QAILPLRGKILNIEKCAPEKIYQNTELQALISALGLGIKGNEFDAGSLRYHRIVIMTDADVDGSHIRILLLTFFFRYQ 234
            QAILPLRGKILNIEKCA E+IYQN ELQALISALGLGIKGNEFDA SLRYHRIV+MTDADVDGSHIRILLLTFFFRYQ
Sbjct:  492 QAILPLRGKILNIEKCASERIYQNNELQALISALGLGIKGNEFDASSLRYHRIVVMTDADVDGSHIRILLLTFFFRYQ 569
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BLAST of mRNA_F-distichus_contig103887.346.1 vs. uniprot
Match: A0A4D9D639_9STRA (DNA gyrase subunit B n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D639_9STRA)

HSP 1 Score: 140 bits (353), Expect = 6.210e-37
Identity = 70/78 (89.74%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 QAILPLRGKILNIEKCAPEKIYQNTELQALISALGLGIKGNEFDAGSLRYHRIVIMTDADVDGSHIRILLLTFFFRYQ 234
            QAILPLRGKILNIEK A EKIYQNTELQALISALGLGIKGNEFD  +LRYHRI+IMTDADVDG+HIRILLLTF FRYQ
Sbjct:  543 QAILPLRGKILNIEKAATEKIYQNTELQALISALGLGIKGNEFDPATLRYHRIMIMTDADVDGAHIRILLLTFLFRYQ 620
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BLAST of mRNA_F-distichus_contig103887.346.1 vs. uniprot
Match: A0A7S3M3P7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M3P7_9STRA)

HSP 1 Score: 131 bits (330), Expect = 7.290e-37
Identity = 64/78 (82.05%), Postives = 71/78 (91.03%), Query Frame = 1 
Query:    1 QAILPLRGKILNIEKCAPEKIYQNTELQALISALGLGIKGNEFDAGSLRYHRIVIMTDADVDGSHIRILLLTFFFRYQ 234
            QAILPL+GKILNIEK + +KIYQNTELQALISALGLG+KG  FD   LRYHRIVIMTDADVDG+HIR+LLLTFF+RYQ
Sbjct:   40 QAILPLKGKILNIEKASSDKIYQNTELQALISALGLGVKGAAFDPEQLRYHRIVIMTDADVDGAHIRLLLLTFFYRYQ 117
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BLAST of mRNA_F-distichus_contig103887.346.1 vs. uniprot
Match: A0A7S1BUN0_9STRA (DNA topoisomerase 2 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BUN0_9STRA)

HSP 1 Score: 137 bits (346), Expect = 2.300e-36
Identity = 66/78 (84.62%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 QAILPLRGKILNIEKCAPEKIYQNTELQALISALGLGIKGNEFDAGSLRYHRIVIMTDADVDGSHIRILLLTFFFRYQ 234
            QAILPLRGKILNIE+ APE+IYQN ELQ LISALGLGIKG+EFD  SLRYHRI+IMTDADVDG+HIR+LLLTFF+RYQ
Sbjct:  358 QAILPLRGKILNIERAAPERIYQNNELQNLISALGLGIKGSEFDLSSLRYHRIIIMTDADVDGAHIRVLLLTFFYRYQ 435
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BLAST of mRNA_F-distichus_contig103887.346.1 vs. uniprot
Match: A0A835Z3N6_9STRA (DNA gyrase subunit B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3N6_9STRA)

HSP 1 Score: 138 bits (348), Expect = 2.500e-36
Identity = 69/78 (88.46%), Postives = 72/78 (92.31%), Query Frame = 1 
Query:    1 QAILPLRGKILNIEKCAPEKIYQNTELQALISALGLGIKGNEFDAGSLRYHRIVIMTDADVDGSHIRILLLTFFFRYQ 234
            QAILPLRGKILNIEKCA EKIYQN ELQALISALGLG+KG +F+   LRYHRIVIMTDADVDGSHIRILLLTFFFRYQ
Sbjct:  483 QAILPLRGKILNIEKCANEKIYQNNELQALISALGLGVKGVDFELEKLRYHRIVIMTDADVDGSHIRILLLTFFFRYQ 560
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BLAST of mRNA_F-distichus_contig103887.346.1 vs. uniprot
Match: A0A7S2RLA2_9STRA (DNA gyrase subunit B n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLA2_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.070e-35
Identity = 66/78 (84.62%), Postives = 71/78 (91.03%), Query Frame = 1 
Query:    1 QAILPLRGKILNIEKCAPEKIYQNTELQALISALGLGIKGNEFDAGSLRYHRIVIMTDADVDGSHIRILLLTFFFRYQ 234
            QA+LPLRGKILNIEK APEKIYQN ELQALISALGLG+K  EFD  SLRYH +VIMTDADVDG+HIRILLLTFF+RYQ
Sbjct:  546 QAVLPLRGKILNIEKAAPEKIYQNNELQALISALGLGVKNGEFDLASLRYHSVVIMTDADVDGAHIRILLLTFFYRYQ 623
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BLAST of mRNA_F-distichus_contig103887.346.1 vs. uniprot
Match: A0A7S2P1J8_9STRA (DNA topoisomerase 2 n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P1J8_9STRA)

HSP 1 Score: 134 bits (338), Expect = 3.750e-35
Identity = 66/78 (84.62%), Postives = 71/78 (91.03%), Query Frame = 1 
Query:    1 QAILPLRGKILNIEKCAPEKIYQNTELQALISALGLGIKGNEFDAGSLRYHRIVIMTDADVDGSHIRILLLTFFFRYQ 234
            QAILPLRGKILNIE+ A EKIYQN ELQ+LISALGLGIKG E D  SLRYHRIVIMTDADVDG+HIR+LLLTFF+RYQ
Sbjct:  385 QAILPLRGKILNIERAAAEKIYQNNELQSLISALGLGIKGTELDLSSLRYHRIVIMTDADVDGAHIRVLLLTFFYRYQ 462
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BLAST of mRNA_F-distichus_contig103887.346.1 vs. uniprot
Match: A0A7S3XY21_HETAK (DNA gyrase subunit B n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XY21_HETAK)

HSP 1 Score: 135 bits (339), Expect = 4.550e-35
Identity = 67/78 (85.90%), Postives = 71/78 (91.03%), Query Frame = 1 
Query:    1 QAILPLRGKILNIEKCAPEKIYQNTELQALISALGLGIKGNEFDAGSLRYHRIVIMTDADVDGSHIRILLLTFFFRYQ 234
            QAILPLRGKILNIEK A EKIYQN ELQALISALGLGIKG EF   +LRYH+I+IMTDADVDGSHIRILLLTFF+RYQ
Sbjct:  494 QAILPLRGKILNIEKAASEKIYQNNELQALISALGLGIKGQEFAESNLRYHKIIIMTDADVDGSHIRILLLTFFYRYQ 571
[Close]
BLAST of mRNA_F-distichus_contig103887.346.1 vs. uniprot
Match: UPI001F44659F (toprim domain-containing protein n=1 Tax=Prochlorococcus sp. HOT212_60m_824C06 TaxID=1961096 RepID=UPI001F44659F)

HSP 1 Score: 127 bits (320), Expect = 4.750e-35
Identity = 62/78 (79.49%), Postives = 70/78 (89.74%), Query Frame = 1 
Query:    1 QAILPLRGKILNIEKCAPEKIYQNTELQALISALGLGIKGNEFDAGSLRYHRIVIMTDADVDGSHIRILLLTFFFRYQ 234
            QAILPLRGKILNIEK    KIY+NTE+Q+LI+ALGLGIKG EF+  SLRYHR+VIMTDADVDG+HIR LLLTFF+RYQ
Sbjct:  133 QAILPLRGKILNIEKTDDTKIYKNTEIQSLITALGLGIKGEEFNESSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQ 210
[Close]
BLAST of mRNA_F-distichus_contig103887.346.1 vs. uniprot
Match: M1VGL3_CYAM1 (DNA gyrase subunit B n=2 Tax=cellular organisms TaxID=131567 RepID=M1VGL3_CYAM1)

HSP 1 Score: 135 bits (339), Expect = 5.580e-35
Identity = 63/78 (80.77%), Postives = 71/78 (91.03%), Query Frame = 1 
Query:    1 QAILPLRGKILNIEKCAPEKIYQNTELQALISALGLGIKGNEFDAGSLRYHRIVIMTDADVDGSHIRILLLTFFFRYQ 234
            QAILPLRGKILNIEKC   K+Y+NTE+QALI+A+GLG+KG EFDA  LRYHRI+IMTDADVDG+HIR LLLTFFFRYQ
Sbjct:  609 QAILPLRGKILNIEKCDDSKVYKNTEIQALITAIGLGVKGEEFDANQLRYHRIIIMTDADVDGAHIRTLLLTFFFRYQ 686
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig103887.346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRZ5_ECTSI8.810e-4093.59DNA gyrase subunit B n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A4D9D639_9STRA6.210e-3789.74DNA gyrase subunit B n=2 Tax=Monodopsidaceae TaxID... [more]
A0A7S3M3P7_9STRA7.290e-3782.05Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S1BUN0_9STRA2.300e-3684.62DNA topoisomerase 2 n=1 Tax=Corethron hystrix TaxI... [more]
A0A835Z3N6_9STRA2.500e-3688.46DNA gyrase subunit B n=1 Tax=Tribonema minus TaxID... [more]
A0A7S2RLA2_9STRA1.070e-3584.62DNA gyrase subunit B n=1 Tax=Rhizochromulina marin... [more]
A0A7S2P1J8_9STRA3.750e-3584.62DNA topoisomerase 2 n=2 Tax=Leptocylindrus danicus... [more]
A0A7S3XY21_HETAK4.550e-3585.90DNA gyrase subunit B n=1 Tax=Heterosigma akashiwo ... [more]
UPI001F44659F4.750e-3579.49toprim domain-containing protein n=1 Tax=Prochloro... [more]
M1VGL3_CYAM15.580e-3580.77DNA gyrase subunit B n=2 Tax=cellular organisms Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig103887contigF-distichus_contig103887:494..2004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.7
Seed ortholog evalue4.8e-33
Seed eggNOG ortholog2880.D8LRZ5
KEGG koko:K02470,ko:K03164
KEGG Pathwayko01524,map01524
Hectar predicted targeting categoryother localisation
GOsGO:0000819,GO:0003674,GO:0003824,GO:0003916,GO:0003918,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006265,GO:0006276,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008094,GO:0008150,GO:0008152,GO:0009295,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0017111,GO:0022402,GO:0030541,GO:0034641,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051276,GO:0061505,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0098813,GO:0140097,GO:1901360
EggNOG free text desc.DNA topoisomerase type II (ATP-hydrolyzing) activity
EggNOG OGsCOG0187@1,KOG0355@2759
EC5.99.1.3
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03036,ko03400
Exons2
Model size258
Cds size258
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928958.528312-CDS-F-distichus_contig103887:493..6341622928958.528312-CDS-F-distichus_contig103887:493..634Fucus distichus monoicousCDSF-distichus_contig103887 494..634 -
1690885082.142469-CDS-F-distichus_contig103887:493..6341690885082.142469-CDS-F-distichus_contig103887:493..634Fucus distichus monoicousCDSF-distichus_contig103887 494..634 -
1622928958.545736-CDS-F-distichus_contig103887:1887..20041622928958.545736-CDS-F-distichus_contig103887:1887..2004Fucus distichus monoicousCDSF-distichus_contig103887 1888..2004 -
1690885082.1549478-CDS-F-distichus_contig103887:1887..20041690885082.1549478-CDS-F-distichus_contig103887:1887..2004Fucus distichus monoicousCDSF-distichus_contig103887 1888..2004 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig103887.346.1prot_F-distichus_contig103887.346.1Fucus distichus monoicouspolypeptideF-distichus_contig103887 494..2004 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig103887.346.1

>prot_F-distichus_contig103887.346.1 ID=prot_F-distichus_contig103887.346.1|Name=mRNA_F-distichus_contig103887.346.1|organism=Fucus distichus monoicous|type=polypeptide|length=86bp
QAILPLRGKILNIEKCAPEKIYQNTELQALISALGLGIKGNEFDAGSLRY
HRIVIMTDADVDGSHIRILLLTFFFRYQVLYTTPL*
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mRNA from alignment at F-distichus_contig103887:494..2004-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig103887.346.1 ID=mRNA_F-distichus_contig103887.346.1|Name=mRNA_F-distichus_contig103887.346.1|organism=Fucus distichus monoicous|type=mRNA|length=1511bp|location=Sequence derived from alignment at F-distichus_contig103887:494..2004- (Fucus distichus monoicous)
CAGGCGATCCTCCCCCTACGCGGCAAGATCCTCAACATCGAGAAGTGCGC
CCCGGAAAAGATCTACCAAAACACGGAGCTGCAGGCGCTCATATCAGCTC
TCGGACTAGGAATAAAGGTGAGCCAACAGACTACTACTGAACTTGCCAAA
CCTTTTCTCTTGGGGTGACTGGAAACCTTCCTCTGGCGGCGGTAGGTTCG
AGGGGAAGGTGGAGGGGCTGGGGAAAGAGGGAAGAGGAAAGACGGGTGCG
TTCGCTCGGGTATCGGGAGGGTTAGGGTACGTGGTCGTGTGTGCGACTAC
TTGCTCGTTGACCCCAGGAATTTTGCTTCAGACCGCACACATTGTTGATG
TGCCTTTCCGTTGAAACGAAAATCAAGTATTAGTATTAATTATTAGAACG
CCTTCCACGGGGTTTCCGGTTCACACGCGCGGGGGGTTCGTTGCAATTCA
TTTTGTATCATTTCTATTTTCGTTTTTCAGTAAAAGTTGCTTGTCAAGCT
GCATTTTTTTTTTTTTAGGATTTTGTTTTTTGCTGTAACGCTCCTTAAAG
ACGAGTACGTGCTTCTGGGGCACCTGCTTTTGCTGGCTACCACTCGCATT
CATTTCCCCGTCATCTTGCGTGTTCCGCCTGAGCTTGAGAGATGAATACC
CCCTCCCCCTCCTTATAATAACTCTCCATAAAAGTGCAACTGAGCGGGGG
TTATACGGTATCATACGGCACTACTGTATGCAGGAGGGACCAGAGGCGGG
GACAAACGGGAACAGTTGCGCAGCAGGCAGATGGCAATTCATTAATCCTC
GTGTAGTCATAACATTTGTTTCGAAAGGAAATTACTTCTGGGTGAATGCA
CGCGGGAGCTCTTGGTCGTGCGATGATACAAAATGAGCAAAATATATCAT
GTGCCATAACGACTTCTATCCCCCCCCCCTTTTTTTTGCCCCAAAGTAAT
AATAATTGTAATATACTAATAACAAGGCGGTTTTTGTACACGACACACAA
CTATTGATTGACTCTACTGACTGTTACTGTCATTTAAAACACACACAATC
CATTGGTGCTGTTGGTGCCGTTGGTGCCGTTGGTGCGAGCAGTATAGATT
CTCCGATGTCGATCGACCACCGTGCTAACAATACAAAATACGAGATCAAC
AAAATGCTGTACTCTTGTCAAAATGGTTTTCATAACGTCTCATGATAAAT
CATGATAAAGGGATGCGAAAACAAAGCGGTATGTTTGACCCCGCCCCGCC
CCCGACCCCTCGTGCCTTCAATCTGCTCCGCTATACTTGAATACTATGCA
ATGCCAATTATATGTATATACCGTACTACTACATACTATAATATCTACTA
TATATTTGGGTGGAGGGAAGGGCAACGAGTTCGACGCGGGAAGCCTCCGA
TACCATCGTATCGTGATCATGACGGACGCTGACGTTGACGGCTCTCACAT
CCGGATCCTTCTCCTCACCTTCTTCTTTCGGTATCAGGTACTCTATACTA
CACCACTATGA
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Coding sequence (CDS) from alignment at F-distichus_contig103887:494..2004-

>mRNA_F-distichus_contig103887.346.1 ID=mRNA_F-distichus_contig103887.346.1|Name=mRNA_F-distichus_contig103887.346.1|organism=Fucus distichus monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at F-distichus_contig103887:494..2004- (Fucus distichus monoicous)
CAGGCGATCCTCCCCCTACGCGGCAAGATCCTCAACATCGAGAAGTGCGC
CCCGGAAAAGATCTACCAAAACACGGAGCTGCAGGCGCTCATATCAGCTC
TCGGACTAGGAATAAAGCAGGCGATCCTCCCCCTACGCGGCAAGATCCTC
AACATCGAGAAGTGCGCCCCGGAAAAGATCTACCAAAACACGGAGCTGCA
GGCGCTCATATCAGCTCTCGGACTAGGAATAAAGGGCAACGAGTTCGACG
CGGGAAGCCTCCGATACCATCGTATCGTGATCATGACGGACGCTGACGTT
GACGGCTCTCACATCCGGATCCTTCTCCTCACCTTCTTCTTTCGGTATCA
GGTACTCTATACTACACCACTATGAGGCAACGAGTTCGACGCGGGAAGCC
TCCGATACCATCGTATCGTGATCATGACGGACGCTGACGTTGACGGCTCT
CACATCCGGATCCTTCTCCTCACCTTCTTCTTTCGGTATCAGGTACTCTA
TACTACACCACTATGA
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