mRNA_F-distichus_contig103112.279.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig103112.279.1
Unique NamemRNA_F-distichus_contig103112.279.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig103112.279.1 vs. uniprot
Match: D8LCM4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCM4_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 5.950e-7
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    7 LGKRGAYQEAISEVDSATWGGLSPDVYVYGSCVGATA 117
            LGK G +++AISEVDSA  GGL PD YVYGSCVGA A
Sbjct:   59 LGKVGRWRQAISEVDSAIEGGLLPDEYVYGSCVGAAA 95
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig103112.279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCM4_ECTSI5.950e-772.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig103112contigF-distichus_contig103112:1252..1443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928949.3122892-CDS-F-distichus_contig103112:1251..14431622928949.3122892-CDS-F-distichus_contig103112:1251..1443Fucus distichus monoicousCDSF-distichus_contig103112 1252..1443 +
1690885078.8655243-CDS-F-distichus_contig103112:1251..14431690885078.8655243-CDS-F-distichus_contig103112:1251..1443Fucus distichus monoicousCDSF-distichus_contig103112 1252..1443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig103112.279.1prot_F-distichus_contig103112.279.1Fucus distichus monoicouspolypeptideF-distichus_contig103112 1252..1443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig103112.279.1

>prot_F-distichus_contig103112.279.1 ID=prot_F-distichus_contig103112.279.1|Name=mRNA_F-distichus_contig103112.279.1|organism=Fucus distichus monoicous|type=polypeptide|length=64bp
TALGKRGAYQEAISEVDSATWGGLSPDVYVYGSCVGATAHGGRWKKTVDL
LRRMRGESITPTT*
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mRNA from alignment at F-distichus_contig103112:1252..1443+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig103112.279.1 ID=mRNA_F-distichus_contig103112.279.1|Name=mRNA_F-distichus_contig103112.279.1|organism=Fucus distichus monoicous|type=mRNA|length=192bp|location=Sequence derived from alignment at F-distichus_contig103112:1252..1443+ (Fucus distichus monoicous)
ACGGCGCTCGGGAAACGTGGCGCTTATCAGGAGGCGATCTCCGAAGTCGA
CTCGGCCACATGGGGTGGTCTTAGCCCAGACGTCTACGTATACGGGAGCT
GCGTCGGAGCCACGGCGCACGGCGGGCGGTGGAAGAAGACCGTGGATCTG
CTCCGCCGCATGCGGGGTGAGAGCATCACGCCGACCACATAG
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Coding sequence (CDS) from alignment at F-distichus_contig103112:1252..1443+

>mRNA_F-distichus_contig103112.279.1 ID=mRNA_F-distichus_contig103112.279.1|Name=mRNA_F-distichus_contig103112.279.1|organism=Fucus distichus monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at F-distichus_contig103112:1252..1443+ (Fucus distichus monoicous)
ACGGCGCTCGGGAAACGTGGCGCTTATCAGGAGGCGATCTCCGAAGTCGA
CTCGGCCACATGGGGTGGTCTTAGCCCAGACGTCTACGTATACGGGAGCT
GCGTCGGAGCCACGGCGCACGGCGGGCGGTGGAAGAAGACCGTGGATCTG
CTCCGCCGCATGCGGGGTGAGAGCATCACGCCGACCACATAGACGGCGCT
CGGGAAACGTGGCGCTTATCAGGAGGCGATCTCCGAAGTCGACTCGGCCA
CATGGGGTGGTCTTAGCCCAGACGTCTACGTATACGGGAGCTGCGTCGGA
GCCACGGCGCACGGCGGGCGGTGGAAGAAGACCGTGGATCTGCTCCGCCG
CATGCGGGGTGAGAGCATCACGCCGACCACATAG
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