prot_F-distichus_contig103112.279.1 (polypeptide) Fucus distichus monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-distichus_contig103112.279.1
Unique Nameprot_F-distichus_contig103112.279.1
Typepolypeptide
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Sequence length64
Homology
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BLAST of mRNA_F-distichus_contig103112.279.1 vs. uniprot
Match: D8LCM4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCM4_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 5.950e-7
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 0 
Query:    3 LGKRGAYQEAISEVDSATWGGLSPDVYVYGSCVGATA 39
            LGK G +++AISEVDSA  GGL PD YVYGSCVGA A
Sbjct:   59 LGKVGRWRQAISEVDSAIEGGLLPDEYVYGSCVGAAA 95
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig103112.279.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCM4_ECTSI5.950e-772.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: OGS1.0 of Fucus distichus monoicous
Date Performed: 2021-02-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 29..62
e-value: 9.9E-4
score: 17.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 27..61
score: 8.923
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..63
e-value: 1.8E-7
score: 32.6

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 29..62
e-value: 9.9E-4
score: 17.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 27..61
score: 8.923
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..63
e-value: 1.8E-7
score: 32.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig103112contigF-distichus_contig103112:1252..1443 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Fucus distichus monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig103112.279.1mRNA_F-distichus_contig103112.279.1Fucus distichus monoicousmRNAF-distichus_contig103112 1252..1443 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-distichus_contig103112.279.1 ID=prot_F-distichus_contig103112.279.1|Name=mRNA_F-distichus_contig103112.279.1|organism=Fucus distichus monoicous|type=polypeptide|length=64bp
TALGKRGAYQEAISEVDSATWGGLSPDVYVYGSCVGATAHGGRWKKTVDL
LRRMRGESITPTT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf