mRNA_F-distichus_contig102736.241.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102736.241.1
Unique NamemRNA_F-distichus_contig102736.241.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig102736.241.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 5.470e-39
Identity = 67/112 (59.82%), Postives = 88/112 (78.57%), Query Frame = 1 
Query:    1 STQQAALLRNPDPGRLMMLLFVKTFIIGHLLPFSLSDSPDVRLFFECVAHTSFPRSKLYPKMVKHYLVEVYKATVSSFSHRLQSAFAGAGGPALHASFDLWTSQTSNEKYIG 336
            S  + A++++ DPGR+M+L++VK FII HLL FSLSDS DVR FFE     +FP+S LYP+M+KH++VE+Y ATVS FS+ ++ A  GAGG  LHA+FDLWTS+ SNEKYIG
Sbjct:  153 SKHKEAVMKSSDPGRVMLLMYVKVFIISHLLAFSLSDSQDVRAFFEVCCEDTFPKSTLYPQMIKHFVVELYDATVSKFSYSIRKAITGAGGAVLHANFDLWTSKWSNEKYIG 264
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102736.241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KVU5_9PHAE5.470e-3959.82Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102736contigF-distichus_contig102736:1631..1966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928944.5973606-CDS-F-distichus_contig102736:1630..19661622928944.5973606-CDS-F-distichus_contig102736:1630..1966Fucus distichus monoicousCDSF-distichus_contig102736 1631..1966 +
1690885076.6938841-CDS-F-distichus_contig102736:1630..19661690885076.6938841-CDS-F-distichus_contig102736:1630..1966Fucus distichus monoicousCDSF-distichus_contig102736 1631..1966 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102736.241.1prot_F-distichus_contig102736.241.1Fucus distichus monoicouspolypeptideF-distichus_contig102736 1631..1966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102736.241.1

>prot_F-distichus_contig102736.241.1 ID=prot_F-distichus_contig102736.241.1|Name=mRNA_F-distichus_contig102736.241.1|organism=Fucus distichus monoicous|type=polypeptide|length=112bp
STQQAALLRNPDPGRLMMLLFVKTFIIGHLLPFSLSDSPDVRLFFECVAH
TSFPRSKLYPKMVKHYLVEVYKATVSSFSHRLQSAFAGAGGPALHASFDL
WTSQTSNEKYIG
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mRNA from alignment at F-distichus_contig102736:1631..1966+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102736.241.1 ID=mRNA_F-distichus_contig102736.241.1|Name=mRNA_F-distichus_contig102736.241.1|organism=Fucus distichus monoicous|type=mRNA|length=336bp|location=Sequence derived from alignment at F-distichus_contig102736:1631..1966+ (Fucus distichus monoicous)
AGCACGCAGCAGGCAGCACTGTTGAGAAACCCCGACCCGGGTCGTCTTAT
GATGCTGCTGTTCGTGAAGACGTTCATCATCGGGCATCTGCTCCCCTTCA
GCCTGTCGGATAGCCCCGACGTCCGGTTGTTCTTCGAGTGTGTCGCTCAC
ACTTCGTTCCCAAGGTCCAAGCTATACCCCAAGATGGTCAAGCACTATCT
CGTCGAGGTCTACAAAGCCACGGTATCGAGCTTTTCGCACCGGCTGCAGA
GTGCTTTCGCTGGAGCAGGGGGGCCTGCACTACACGCCAGCTTCGATCTC
TGGACTAGCCAGACGTCGAACGAGAAGTATATAGGT
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Coding sequence (CDS) from alignment at F-distichus_contig102736:1631..1966+

>mRNA_F-distichus_contig102736.241.1 ID=mRNA_F-distichus_contig102736.241.1|Name=mRNA_F-distichus_contig102736.241.1|organism=Fucus distichus monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at F-distichus_contig102736:1631..1966+ (Fucus distichus monoicous)
AGCACGCAGCAGGCAGCACTGTTGAGAAACCCCGACCCGGGTCGTCTTAT
GATGCTGCTGTTCGTGAAGACGTTCATCATCGGGCATCTGCTCCCCTTCA
GCCTGTCGGATAGCCCCGACGTCCGGTTGTTCTTCGAGTGTGTCGCTCAC
ACTTCGTTCCCAAGGTCCAAGCTATACCCCAAGATGGTCAAGCACTATCT
CGTCGAGGTCTACAAAGCCACGGTATCGAGCTTTTCGCACCGGCTGCAGA
GTGCTTTCGCTGGAGCAGGGGGGCCTGCACTACACGCCAGCTTCGATCTC
TGGACTAGCCAGACGTCGAACGAGAAGTATATAGGTAGCACGCAGCAGGC
AGCACTGTTGAGAAACCCCGACCCGGGTCGTCTTATGATGCTGCTGTTCG
TGAAGACGTTCATCATCGGGCATCTGCTCCCCTTCAGCCTGTCGGATAGC
CCCGACGTCCGGTTGTTCTTCGAGTGTGTCGCTCACACTTCGTTCCCAAG
GTCCAAGCTATACCCCAAGATGGTCAAGCACTATCTCGTCGAGGTCTACA
AAGCCACGGTATCGAGCTTTTCGCACCGGCTGCAGAGTGCTTTCGCTGGA
GCAGGGGGGCCTGCACTACACGCCAGCTTCGATCTCTGGACTAGCCAGAC
GTCGAACGAGAAGTATATAGGT
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