mRNA_F-distichus_contig102495.211.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig102495.211.1
Unique NamemRNA_F-distichus_contig102495.211.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig102495.211.1 vs. uniprot
Match: D8LD88_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD88_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 2.180e-14
Identity = 32/42 (76.19%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    4 RDVGRTFPNQRLFRSKSGPGQNMLANVLKAYIRSNPDVGYCQ 129
            RDVGRTFP Q LF+S++GPGQN+LANVLKA +++NPDVGYCQ
Sbjct:  202 RDVGRTFPRQDLFKSRNGPGQNLLANVLKACLKTNPDVGYCQ 243
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BLAST of mRNA_F-distichus_contig102495.211.1 vs. uniprot
Match: A0A6H5KV33_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV33_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 2.180e-14
Identity = 32/42 (76.19%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    4 RDVGRTFPNQRLFRSKSGPGQNMLANVLKAYIRSNPDVGYCQ 129
            RDVGRTFP Q LF+S++GPGQN+LANVLKA +++NPDVGYCQ
Sbjct:  203 RDVGRTFPRQDLFKSRNGPGQNLLANVLKACLKTNPDVGYCQ 244
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BLAST of mRNA_F-distichus_contig102495.211.1 vs. uniprot
Match: A0A507E380_9FUNG (Rab-GAP TBC domain-containing protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E380_9FUNG)

HSP 1 Score: 58.9 bits (141), Expect = 7.110e-9
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 DRDVGRTFPNQRLFRSKSGPGQNMLANVLKAYIRSNPDVGYCQ 129
            +RD+GR FP  ++F  + GPGQ  L NVL+AY   NP++GYCQ
Sbjct:   84 ERDIGRCFPEHKMFAEEGGPGQTNLRNVLRAYALYNPEIGYCQ 126
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BLAST of mRNA_F-distichus_contig102495.211.1 vs. uniprot
Match: A0A177WSG0_BATDL (Rab-GAP TBC domain-containing protein n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=A0A177WSG0_BATDL)

HSP 1 Score: 54.7 bits (130), Expect = 2.490e-7
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    4 RDVGRTFPNQRLFRSKSGPGQNMLANVLKAYIRSNPDVGYCQ 129
            RD+ RTFPN   F+  +GPGQN L NVLKAY   + ++GYCQ
Sbjct:  311 RDLARTFPNHPHFKDATGPGQNSLFNVLKAYSIYDQEIGYCQ 352
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BLAST of mRNA_F-distichus_contig102495.211.1 vs. uniprot
Match: A0A1R1Y513_9FUNG (TBC1 domain family member 10B n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1Y513_9FUNG)

HSP 1 Score: 52.8 bits (125), Expect = 1.200e-6
Identity = 22/43 (51.16%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 DRDVGRTFPNQRLFRSKSGPGQNMLANVLKAYIRSNPDVGYCQ 129
            +RD+ R+FPN  +F  KS  GQ+ L  +L AY++ NP+VGYCQ
Sbjct:  791 ERDLSRSFPNHAMFYDKSCGGQSCLRRILIAYLKYNPEVGYCQ 833
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BLAST of mRNA_F-distichus_contig102495.211.1 vs. uniprot
Match: A0A1R1XLI4_9FUNG (TBC1 domain family member 10B n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1XLI4_9FUNG)

HSP 1 Score: 52.0 bits (123), Expect = 2.240e-6
Identity = 21/43 (48.84%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 DRDVGRTFPNQRLFRSKSGPGQNMLANVLKAYIRSNPDVGYCQ 129
            +RD+ R+FPN  +F  +S  GQ+ L  +L AY++ NP+VGYCQ
Sbjct:  805 ERDLSRSFPNHAMFYDESCGGQSCLRRILTAYLKYNPEVGYCQ 847
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BLAST of mRNA_F-distichus_contig102495.211.1 vs. uniprot
Match: A0A163DV54_PHYB8 (Rab-GAP TBC domain-containing protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A163DV54_PHYB8)

HSP 1 Score: 51.6 bits (122), Expect = 3.050e-6
Identity = 22/43 (51.16%), Postives = 28/43 (65.12%), Query Frame = 1 
Query:    1 DRDVGRTFPNQRLFRSKSGPGQNMLANVLKAYIRSNPDVGYCQ 129
            +RD+ R +P+   F   +G GQ  L N+LKAY R NP VGYCQ
Sbjct:  478 ERDIARCYPDHSQFNDANGQGQLDLRNILKAYSRHNPQVGYCQ 520
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BLAST of mRNA_F-distichus_contig102495.211.1 vs. uniprot
Match: A0A2T9YB58_9FUNG (Rab-GAP TBC domain-containing protein n=1 Tax=Smittium simulii TaxID=133385 RepID=A0A2T9YB58_9FUNG)

HSP 1 Score: 51.2 bits (121), Expect = 4.180e-6
Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    1 DRDVGRTFPNQRLFRSKSGPGQNMLANVLKAYIRSNPDVGYCQ-VKRVGGI 150
            +RD+ R+FPN   F  +S  G   L  +L+AY+R NP+VGYCQ + +V G+
Sbjct:  479 ERDLPRSFPNHAYFYDESCQGIQKLRRILRAYVRYNPEVGYCQGMNQVAGV 529
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BLAST of mRNA_F-distichus_contig102495.211.1 vs. uniprot
Match: A0A1Y1VKD9_9FUNG (RabGAP/TBC n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1VKD9_9FUNG)

HSP 1 Score: 50.8 bits (120), Expect = 5.710e-6
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:    4 RDVGRTFPNQRLFRSKSGPGQNMLANVLKAYIRSNPDVGYCQ 129
            +D+ R +P+  +F  K+  GQN L NVLKAY R NP +GYCQ
Sbjct:  233 KDITRCYPDHIMFNDKNYYGQNNLYNVLKAYSRYNPSIGYCQ 274
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BLAST of mRNA_F-distichus_contig102495.211.1 vs. uniprot
Match: A0A0P1AKY0_PLAHL (Rab6 GTPase activator GAPCenA and related TBC domain proteins n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AKY0_PLAHL)

HSP 1 Score: 50.4 bits (119), Expect = 7.810e-6
Identity = 25/43 (58.14%), Postives = 28/43 (65.12%), Query Frame = 1 
Query:    1 DRDVGRTFPNQRLFRSKSGPGQNMLANVLKAYIRSNPDVGYCQ 129
            DRD+ RTFPN R F S  G G+ +L NVLKA      DVGYCQ
Sbjct:  116 DRDIERTFPNDRFF-SDDGDGKRLLGNVLKAVALYADDVGYCQ 157
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102495.211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LD88_ECTSI2.180e-1476.19Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KV33_9PHAE2.180e-1476.19Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A507E380_9FUNG7.110e-953.49Rab-GAP TBC domain-containing protein n=1 Tax=Powe... [more]
A0A177WSG0_BATDL2.490e-757.14Rab-GAP TBC domain-containing protein n=2 Tax=Batr... [more]
A0A1R1Y513_9FUNG1.200e-651.16TBC1 domain family member 10B n=1 Tax=Smittium cul... [more]
A0A1R1XLI4_9FUNG2.240e-648.84TBC1 domain family member 10B n=1 Tax=Smittium cul... [more]
A0A163DV54_PHYB83.050e-651.16Rab-GAP TBC domain-containing protein n=1 Tax=Phyc... [more]
A0A2T9YB58_9FUNG4.180e-645.10Rab-GAP TBC domain-containing protein n=1 Tax=Smit... [more]
A0A1Y1VKD9_9FUNG5.710e-652.38RabGAP/TBC n=1 Tax=Piromyces finnis TaxID=1754191 ... [more]
A0A0P1AKY0_PLAHL7.810e-658.14Rab6 GTPase activator GAPCenA and related TBC doma... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig102495contigF-distichus_contig102495:738..890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue6.2e-12
Seed eggNOG ortholog2880.D8LD88
Preferred nameFASTKD3
KEGG koko:K19944
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.regulation of vesicle fusion
EggNOG OGsCOG5210@1,KOG1102@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size153
Cds size153
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928941.6070454-CDS-F-distichus_contig102495:737..8901622928941.6070454-CDS-F-distichus_contig102495:737..890Fucus distichus monoicousCDSF-distichus_contig102495 738..890 +
1690885075.3840077-CDS-F-distichus_contig102495:737..8901690885075.3840077-CDS-F-distichus_contig102495:737..890Fucus distichus monoicousCDSF-distichus_contig102495 738..890 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig102495.211.1prot_F-distichus_contig102495.211.1Fucus distichus monoicouspolypeptideF-distichus_contig102495 738..890 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig102495.211.1

>prot_F-distichus_contig102495.211.1 ID=prot_F-distichus_contig102495.211.1|Name=mRNA_F-distichus_contig102495.211.1|organism=Fucus distichus monoicous|type=polypeptide|length=51bp
DRDVGRTFPNQRLFRSKSGPGQNMLANVLKAYIRSNPDVGYCQVKRVGGI
*
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mRNA from alignment at F-distichus_contig102495:738..890+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig102495.211.1 ID=mRNA_F-distichus_contig102495.211.1|Name=mRNA_F-distichus_contig102495.211.1|organism=Fucus distichus monoicous|type=mRNA|length=153bp|location=Sequence derived from alignment at F-distichus_contig102495:738..890+ (Fucus distichus monoicous)
GACAGGGACGTTGGGCGAACATTCCCGAACCAACGTCTCTTCCGGAGCAA
GAGCGGACCGGGACAGAACATGCTTGCGAACGTTCTTAAGGCTTATATAA
GGTCCAACCCCGACGTGGGGTACTGTCAGGTGAAGAGGGTAGGAGGGATC
TAA
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Coding sequence (CDS) from alignment at F-distichus_contig102495:738..890+

>mRNA_F-distichus_contig102495.211.1 ID=mRNA_F-distichus_contig102495.211.1|Name=mRNA_F-distichus_contig102495.211.1|organism=Fucus distichus monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at F-distichus_contig102495:738..890+ (Fucus distichus monoicous)
GACAGGGACGTTGGGCGAACATTCCCGAACCAACGTCTCTTCCGGAGCAA
GAGCGGACCGGGACAGAACATGCTTGCGAACGTTCTTAAGGCTTATATAA
GGTCCAACCCCGACGTGGGGTACTGTCAGGTGAAGAGGGTAGGAGGGATC
TAAGACAGGGACGTTGGGCGAACATTCCCGAACCAACGTCTCTTCCGGAG
CAAGAGCGGACCGGGACAGAACATGCTTGCGAACGTTCTTAAGGCTTATA
TAAGGTCCAACCCCGACGTGGGGTACTGTCAGGTGAAGAGGGTAGGAGGG
ATCTAA
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