mRNA_F-distichus_contig102292.197.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig102292.197.1 vs. uniprot
Match: A0A6H5L9M6_9PHAE (S1 motif domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9M6_9PHAE) HSP 1 Score: 180 bits (457), Expect = 4.370e-52 Identity = 81/108 (75.00%), Postives = 94/108 (87.04%), Query Frame = 1
Query: 1 EDPEKDLWKHCEMLPVKDDVASIFARSVRGEKEFPDFAINQRAAVAVGRYLQDPLVEMAGMWTTMDTSDNFGHETFSLKLHPLQDLVPPQQLLRVWTHRLMDSVSDVG 324
ED E+++WK C + PVKDDVA +FARS RGEKEF DF++NQRAAV + RYLQDPLVE AGMWTTMD+S NFGHE FSL+LHPLQD VPPQQLL+VWTHR+MD+VS VG
Sbjct: 133 EDEEEEVWKQCSLAPVKDDVACVFARSTRGEKEFADFSVNQRAAVGLARYLQDPLVEFAGMWTTMDSSGNFGHEMFSLRLHPLQDQVPPQQLLKVWTHRMMDAVSAVG 240
BLAST of mRNA_F-distichus_contig102292.197.1 vs. uniprot
Match: D8LQN4_ECTSI (GTB1 RNA binding / hydrolase, acting on ester bonds, also similar to transcription elogantion facto n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN4_ECTSI) HSP 1 Score: 177 bits (450), Expect = 1.710e-49 Identity = 80/108 (74.07%), Postives = 94/108 (87.04%), Query Frame = 1
Query: 1 EDPEKDLWKHCEMLPVKDDVASIFARSVRGEKEFPDFAINQRAAVAVGRYLQDPLVEMAGMWTTMDTSDNFGHETFSLKLHPLQDLVPPQQLLRVWTHRLMDSVSDVG 324
+D E+++WK C + PVKDDVA +FARS RGEKEF DF++NQRAAVA+ RYLQDPLVE AGMWTTMD+S NFGHE FSL+LH LQD VPPQQLL+VWTHR+MD+VS VG
Sbjct: 1090 QDEEEEVWKQCSLAPVKDDVACVFARSTRGEKEFADFSVNQRAAVALARYLQDPLVEFAGMWTTMDSSGNFGHEMFSLRLHALQDQVPPQQLLKVWTHRMMDAVSAVG 1197
BLAST of mRNA_F-distichus_contig102292.197.1 vs. uniprot
Match: B7G582_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G582_PHATC) HSP 1 Score: 99.0 bits (245), Expect = 7.630e-22 Identity = 48/108 (44.44%), Postives = 67/108 (62.04%), Query Frame = 1
Query: 1 EDPEKDLWKHCEMLPVKDDVASIFARSVRGEKEFPDFAINQRAAVAVGRYLQDPLVEMAGMWTTMDTSDNFGHETFSLKLHPLQDLVPPQQLLRVWTHRLMDSVSDVG 324
+D ++ WK C + + D VA +F RSVRG KEFPDFA+N + A+AV RY QDPL E+ W+ + FG E L +HP+Q L+P +LLR + L D ++VG
Sbjct: 1155 DDQDEGDWK-CNVDLIDDSVAQLFGRSVRGRKEFPDFAVNLKCAIAVARYAQDPLGELTYAWSVASDAGAFGTEMLYLNIHPMQQLLPRTRLLREYERILCDVTAEVG 1261
BLAST of mRNA_F-distichus_contig102292.197.1 vs. uniprot
Match: A0A7S2A5F9_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A5F9_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 6.130e-21 Identity = 48/108 (44.44%), Postives = 69/108 (63.89%), Query Frame = 1
Query: 1 EDPEKDLWKHCEMLPVKDDVASIFARSVRGEKEFPDFAINQRAAVAVGRYLQDPLVEMAGMWTTMDTSDNFGHETFSLKLHPLQDLVPPQQLLRVWTHRLMDSVSDVG 324
ED E WK C + V+D+VA +F RS+RG+KEFPDFA+N + A+AV R+ +DPL E+ W+ + FG E L +HPLQ +P LLR + L ++V++VG
Sbjct: 50 EDDEDFQWK-CNVDIVEDNVAQLFGRSIRGKKEFPDFAVNLKCAIAVARHAKDPLGELTYAWSVASDAGVFGAEMLYLNVHPLQRFLPKPLLLRQYERVLCNAVAEVG 156
BLAST of mRNA_F-distichus_contig102292.197.1 vs. uniprot
Match: A0A7S4R4E1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R4E1_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 6.730e-21 Identity = 48/108 (44.44%), Postives = 69/108 (63.89%), Query Frame = 1
Query: 1 EDPEKDLWKHCEMLPVKDDVASIFARSVRGEKEFPDFAINQRAAVAVGRYLQDPLVEMAGMWTTMDTSDNFGHETFSLKLHPLQDLVPPQQLLRVWTHRLMDSVSDVG 324
ED E WK C + V+D+VA +F RS+RG+KEFPDFA+N + A+AV R+ +DPL E+ W+ + FG E L +HPLQ +P LLR + L ++V++VG
Sbjct: 1250 EDDEDFQWK-CNVDIVEDNVAQLFGRSIRGKKEFPDFAVNLKCAIAVARHAKDPLGELTYAWSVASDAGVFGAEMLYLNVHPLQRFLPKPLLLRQYERVLCNAVAEVG 1356
BLAST of mRNA_F-distichus_contig102292.197.1 vs. uniprot
Match: A0A7S2K6D1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K6D1_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 4.870e-16 Identity = 40/107 (37.38%), Postives = 67/107 (62.62%), Query Frame = 1
Query: 10 EKDLWKHCEMLPVKDDVASIFARSVRGEKEFPDFA--INQRAAVAVGRYLQDPLVEMAGMWTTMDTSDNFGHETFSLKLHPLQDLVPPQQLLRVWTHRLMDSVSDVG 324
E + W+ C++ V D +A +FARSVR +KEFPDF + + A+ + RY Q+P+ E+A ++T + +FG E L +H LQ +P QLL+ + + ++V++VG
Sbjct: 1103 EDEEWR-CKVDMVDDSIAQLFARSVRSQKEFPDFKSMMGLKCAIGIARYCQNPVAEIAYAYSTASDNGSFGGELLFLNIHELQQFLPKVQLLQHYERAICEAVAEVG 1208
BLAST of mRNA_F-distichus_contig102292.197.1 vs. uniprot
Match: A0A418B159_9STRA (JmjC domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B159_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 5.500e-12 Identity = 37/94 (39.36%), Postives = 55/94 (58.51%), Query Frame = 1
Query: 46 VKDDVASIFARSVRGEKEFPDFAINQRAAVAVGRYLQDPLVEMAGMWTTMDTSD-NFGHETFSLKLHPLQDLVPPQQLLRVWTHRLMDSVSDVG 324
VKDDVA +FA+S R E EFP+ RAA+ + RYL++PL E+ +W + + G E L +HPLQ +V + L+R + + V+ VG
Sbjct: 873 VKDDVARMFAKSKRAEVEFPEEMEGTRAAIGLARYLRNPLSELCAIWGFVPLEEPGRGKELLYLTVHPLQQMVNQEMLVRAYERVFIQVVNKVG 966
BLAST of mRNA_F-distichus_contig102292.197.1 vs. uniprot
Match: A0A6H5G3D7_9HEMI (Transcription elongation factor spt6 n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5G3D7_9HEMI) HSP 1 Score: 68.2 bits (165), Expect = 4.820e-11 Identity = 36/99 (36.36%), Postives = 61/99 (61.62%), Query Frame = 1
Query: 37 MLPVK---DDVASIFARSVRGEKEFPDFAINQRAAVAVGRYLQDPLVEMAGMWTTMDTSDNFGHETFSLKLHPLQDLVPPQQLLRVWTHRLMDSVSDVG 324
++PV+ +D+A ++A S++GE +F D+ + R A+++GR LQDPL+E + + T D E L+ HPLQD V ++LL V T ++ ++VG
Sbjct: 940 VIPVEILDNDLAKVYANSLKGESDFRDYPMLLRQAISLGRRLQDPLIEFSQLCTADD-------EILCLRFHPLQDHVSKEELLDVITLEFVNRTNEVG 1031
BLAST of mRNA_F-distichus_contig102292.197.1 vs. uniprot
Match: A0A1I8J9S0_9PLAT (Transcription elongation factor spt6 n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8J9S0_9PLAT) HSP 1 Score: 67.8 bits (164), Expect = 6.520e-11 Identity = 37/93 (39.78%), Postives = 54/93 (58.06%), Query Frame = 1
Query: 46 VKDDVASIFARSVRGEKEFPDFAINQRAAVAVGRYLQDPLVEMAGMWTTMDTSDNFGHETFSLKLHPLQDLVPPQQLLRVWTHRLMDSVSDVG 324
V ++ A +F +S R EKE P + R +V+V R LQDPLVE+AG+ N + L++HP+QD VP QLL T ++ V++VG
Sbjct: 647 VDNEPARVFEKSRRAEKELPTYPEILRQSVSVARRLQDPLVELAGLV-------NADEDILCLRMHPMQDAVPRDQLLSALTLEFVNKVNEVG 732
BLAST of mRNA_F-distichus_contig102292.197.1 vs. uniprot
Match: A0A1I8JEX7_9PLAT (Transcription elongation factor spt6 n=3 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8JEX7_9PLAT) HSP 1 Score: 67.8 bits (164), Expect = 6.530e-11 Identity = 37/93 (39.78%), Postives = 54/93 (58.06%), Query Frame = 1
Query: 46 VKDDVASIFARSVRGEKEFPDFAINQRAAVAVGRYLQDPLVEMAGMWTTMDTSDNFGHETFSLKLHPLQDLVPPQQLLRVWTHRLMDSVSDVG 324
V ++ A +F +S R EKE P + R +V+V R LQDPLVE+AG+ N + L++HP+QD VP QLL T ++ V++VG
Sbjct: 721 VDNEPARVFEKSRRAEKELPTYPEILRQSVSVARRLQDPLVELAGLV-------NADEDILCLRMHPMQDAVPRDQLLSALTLEFVNKVNEVG 806 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig102292.197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig102292.197.1 >prot_F-distichus_contig102292.197.1 ID=prot_F-distichus_contig102292.197.1|Name=mRNA_F-distichus_contig102292.197.1|organism=Fucus distichus monoicous|type=polypeptide|length=110bp EDPEKDLWKHCEMLPVKDDVASIFARSVRGEKEFPDFAINQRAAVAVGRYback to top mRNA from alignment at F-distichus_contig102292:1044..1665+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig102292.197.1 ID=mRNA_F-distichus_contig102292.197.1|Name=mRNA_F-distichus_contig102292.197.1|organism=Fucus distichus monoicous|type=mRNA|length=622bp|location=Sequence derived from alignment at F-distichus_contig102292:1044..1665+ (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig102292:1044..1665+ >mRNA_F-distichus_contig102292.197.1 ID=mRNA_F-distichus_contig102292.197.1|Name=mRNA_F-distichus_contig102292.197.1|organism=Fucus distichus monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at F-distichus_contig102292:1044..1665+ (Fucus distichus monoicous)back to top |