mRNA_F-distichus_contig101972.161.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig101972.161.1
Unique NamemRNA_F-distichus_contig101972.161.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig101972.161.1 vs. uniprot
Match: A0A5S6QG42_TRIMR (Uncharacterized protein n=5 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QG42_TRIMR)

HSP 1 Score: 63.5 bits (153), Expect = 2.300e-9
Identity = 36/110 (32.73%), Postives = 59/110 (53.64%), Query Frame = 1
Query:   16 WESDSGATFHMSHTRAGMSAYKKALPG-TNVEIADGNILPVDGFGRIEVDLDQPRRTTKMVKMDDVAYVPGLSQNLLSIVKAVEQWGKPLIYYRNEAVLGFPGEESLVFK 342
            W  DSGAT HMS      + +K   P  T V+IADG++LP+   G +   L + + T K     +  +VPG+   +LS+ + VE  G+ +++ RN   + F  ++ LV +
Sbjct:  283 WVIDSGATHHMSPNEEYFTKWKAKSPANTQVQIADGSVLPIANAGTVRAKLTRNKGTVKEFSAKNTLFVPGIRTGILSVPQMVEN-GQTVVFSRNGCRI-FGADDQLVIE 390          
BLAST of mRNA_F-distichus_contig101972.161.1 vs. uniprot
Match: UPI0017832608 (uncharacterized protein LOC118757367 n=1 Tax=Rhagoletis pomonella TaxID=28610 RepID=UPI0017832608)

HSP 1 Score: 55.1 bits (131), Expect = 6.240e-7
Identity = 29/77 (37.66%), Postives = 46/77 (59.74%), Query Frame = 1
Query:   16 WESDSGATFHMSHTRAGMSAYKKALPGTNVEIADGNILPVDGFGRIEVDLDQPRRTTKMVKMDDVAYVPGLSQNLLS 246
            W  DS AT HM+  R   S  +K   G+ V++A+ + L ++  G I +D+    +  K V++++V YVP LS+NLLS
Sbjct:   16 WYVDSAATKHMTFHREWFSTLRKYTTGSKVKVANNSYLQIEAIGTILIDVKVDNQW-KPVRLENVLYVPELSENLLS 91          
BLAST of mRNA_F-distichus_contig101972.161.1 vs. uniprot
Match: UPI0017828D95 (uncharacterized protein LOC118735278 n=2 Tax=Rhagoletis TaxID=28609 RepID=UPI0017828D95)

HSP 1 Score: 55.1 bits (131), Expect = 1.820e-6
Identity = 29/77 (37.66%), Postives = 46/77 (59.74%), Query Frame = 1
Query:   16 WESDSGATFHMSHTRAGMSAYKKALPGTNVEIADGNILPVDGFGRIEVDLDQPRRTTKMVKMDDVAYVPGLSQNLLS 246
            W  DS AT HM+  R   S  +K   G+ V++A+ + L ++  G I +D+    +  K V++++V YVP LS+NLLS
Sbjct:  257 WYVDSAATKHMTFHREWFSTLRKYTTGSKVKVANNSYLQIEAIGTILIDVKVDNQW-KPVRLENVLYVPELSENLLS 332          
BLAST of mRNA_F-distichus_contig101972.161.1 vs. uniprot
Match: A0A0P1ACE6_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ACE6_PLAHL)

HSP 1 Score: 53.9 bits (128), Expect = 4.760e-6
Identity = 29/85 (34.12%), Postives = 48/85 (56.47%), Query Frame = 1
Query:   16 WESDSGATFHMSHTRAGMSAYKKALPGTNVEIADG--NILPVDGFGRIEVDLDQPRRTTKMVKMDDVAYVPGLSQNLLSIVKAVE 264
            W  DSG T H++H     S +   +  +N  I  G  N +P++G G+IE+++   + T +M+ + DV Y P L  +LLS+  AV+
Sbjct:  229 WTIDSGCTRHVTHE----SQWFSTISASNGSITVGVKNQIPIEGIGKIELEVTDSKGTQRMLTLHDVLYAPELKFSLLSVPAAVK 309          
BLAST of mRNA_F-distichus_contig101972.161.1 vs. uniprot
Match: A0A7D9IJR2_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IJR2_PARCT)

HSP 1 Score: 52.4 bits (124), Expect = 1.640e-5
Identity = 32/102 (31.37%), Postives = 52/102 (50.98%), Query Frame = 1
Query:    4 RKEEWESDSGATFHMSHTRAGMSAYKKALPGTNVEIADGNILPVDGFGRIEVDLDQPR-RTTKMVKMDDVAYVPGLSQNLLSIVKAVEQWGKPLIYYRNEAV 306
            R   W  DSGAT HM +  +            +V +ADG+++   G G ++  ++ P  +  K   + DV YVP LS NL+S+ KA +  GK   Y +++ +
Sbjct:   51 RTNTWIIDSGATCHMCNDASQFVKLHNLEKPEDVTLADGHVVKATGRGVVKTKIESPNGQKGKSCVLQDVLYVPSLSNNLVSVSKATKS-GKTEDYDKSKDI 151          
BLAST of mRNA_F-distichus_contig101972.161.1 vs. uniprot
Match: A0A225UU99_9STRA (Pol Polyprotein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UU99_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 6.050e-5
Identity = 25/83 (30.12%), Postives = 45/83 (54.22%), Query Frame = 1
Query:   16 WESDSGATFHMSHTRAGMSAYKKALPGTNVEIADGNILPVDGFGRIEVDLDQPRRTTKMVKMDDVAYVPGLSQNLLSIVKAVE 264
            W  DSG T H+SH     +    +  G ++ +   N +P++G GR+E+++   + T + + +  V Y P L  +LLS+  AV+
Sbjct:  205 WTIDSGCTRHVSHESQWFTDITTS--GGSITVGGNNQIPIEGIGRVELEVSDSKGTMQKLILHGVLYAPQLQFSLLSVPAAVK 285          
BLAST of mRNA_F-distichus_contig101972.161.1 vs. uniprot
Match: A0A2P4XU07_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XU07_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 9.920e-5
Identity = 25/83 (30.12%), Postives = 44/83 (53.01%), Query Frame = 1
Query:   16 WESDSGATFHMSHTRAGMSAYKKALPGTNVEIADGNILPVDGFGRIEVDLDQPRRTTKMVKMDDVAYVPGLSQNLLSIVKAVE 264
            W  D G T H++H     S    A  G ++ +   N +P++G GR+E+++   + T + + +  V Y P L  +LLS+  AV+
Sbjct:  153 WTIDPGCTRHVTHESQWFSDI--AASGGSITVGGNNQIPIEGIGRVELEVSDSKGTMQNLILHGVLYAPQLQFSLLSVPAAVK 233          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101972.161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A5S6QG42_TRIMR2.300e-932.73Uncharacterized protein n=5 Tax=Trichuris muris Ta... [more]
UPI00178326086.240e-737.66uncharacterized protein LOC118757367 n=1 Tax=Rhago... [more]
UPI0017828D951.820e-637.66uncharacterized protein LOC118735278 n=2 Tax=Rhago... [more]
A0A0P1ACE6_PLAHL4.760e-634.12Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A7D9IJR2_PARCT1.640e-531.37Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A225UU99_9STRA6.050e-530.12Pol Polyprotein (Fragment) n=1 Tax=Phytophthora me... [more]
A0A2P4XU07_9STRA9.920e-530.12Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig101972contigF-distichus_contig101972:1708..2049 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue6e-07
Seed eggNOG ortholog164328.Phyra85925
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QI8W@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928933.8007133-CDS-F-distichus_contig101972:1707..20491622928933.8007133-CDS-F-distichus_contig101972:1707..2049Fucus distichus monoicousCDSF-distichus_contig101972 1708..2049 -
1690885072.923929-CDS-F-distichus_contig101972:1707..20491690885072.923929-CDS-F-distichus_contig101972:1707..2049Fucus distichus monoicousCDSF-distichus_contig101972 1708..2049 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig101972.161.1prot_F-distichus_contig101972.161.1Fucus distichus monoicouspolypeptideF-distichus_contig101972 1708..2049 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig101972.161.1

>prot_F-distichus_contig101972.161.1 ID=prot_F-distichus_contig101972.161.1|Name=mRNA_F-distichus_contig101972.161.1|organism=Fucus distichus monoicous|type=polypeptide|length=114bp
DRKEEWESDSGATFHMSHTRAGMSAYKKALPGTNVEIADGNILPVDGFGR
IEVDLDQPRRTTKMVKMDDVAYVPGLSQNLLSIVKAVEQWGKPLIYYRNE
AVLGFPGEESLVFK
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mRNA from alignment at F-distichus_contig101972:1708..2049-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig101972.161.1 ID=mRNA_F-distichus_contig101972.161.1|Name=mRNA_F-distichus_contig101972.161.1|organism=Fucus distichus monoicous|type=mRNA|length=342bp|location=Sequence derived from alignment at F-distichus_contig101972:1708..2049- (Fucus distichus monoicous)
GATAGGAAGGAAGAATGGGAATCAGATTCCGGCGCCACATTCCACATGTC GCACACCCGCGCCGGAATGTCTGCTTATAAGAAGGCATTACCGGGGACGA ACGTTGAGATTGCCGACGGTAACATTCTACCGGTGGACGGGTTCGGGAGA ATCGAGGTGGATCTAGACCAACCGAGGCGTACAACCAAGATGGTGAAGAT GGACGATGTCGCGTATGTGCCGGGACTCTCCCAAAATCTGCTGTCTATTG TCAAAGCAGTAGAGCAATGGGGGAAACCGTTAATCTATTATAGAAATGAA GCCGTGTTGGGGTTCCCGGGGGAGGAATCGCTTGTTTTCAAA
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Coding sequence (CDS) from alignment at F-distichus_contig101972:1708..2049-

>mRNA_F-distichus_contig101972.161.1 ID=mRNA_F-distichus_contig101972.161.1|Name=mRNA_F-distichus_contig101972.161.1|organism=Fucus distichus monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at F-distichus_contig101972:1708..2049- (Fucus distichus monoicous)
GATAGGAAGGAAGAATGGGAATCAGATTCCGGCGCCACATTCCACATGTC
GCACACCCGCGCCGGAATGTCTGCTTATAAGAAGGCATTACCGGGGACGA
ACGTTGAGATTGCCGACGGTAACATTCTACCGGTGGACGGGTTCGGGAGA
ATCGAGGTGGATCTAGACCAACCGAGGCGTACAACCAAGATGGTGAAGAT
GGACGATGTCGCGTATGTGCCGGGACTCTCCCAAAATCTGCTGTCTATTG
TCAAAGCAGTAGAGCAATGGGGGAAACCGTTAATCTATTATAGAAATGAA
GCCGTGTTGGGGTTCCCGGGGGAGGAATCGCTTGTTTTCAAAGATAGGAA
GGAAGAATGGGAATCAGATTCCGGCGCCACATTCCACATGTCGCACACCC
GCGCCGGAATGTCTGCTTATAAGAAGGCATTACCGGGGACGAACGTTGAG
ATTGCCGACGGTAACATTCTACCGGTGGACGGGTTCGGGAGAATCGAGGT
GGATCTAGACCAACCGAGGCGTACAACCAAGATGGTGAAGATGGACGATG
TCGCGTATGTGCCGGGACTCTCCCAAAATCTGCTGTCTATTGTCAAAGCA
GTAGAGCAATGGGGGAAACCGTTAATCTATTATAGAAATGAAGCCGTGTT
GGGGTTCCCGGGGGAGGAATCGCTTGTTTTCAAA
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