mRNA_F-distichus_contig101448.114.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig101448.114.1
Unique NamemRNA_F-distichus_contig101448.114.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig101448.114.1 vs. uniprot
Match: D8LDB8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB8_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 3.330e-51
Identity = 116/250 (46.40%), Postives = 141/250 (56.40%), Query Frame = 1 
Query:    4 GRKNNVQDGALGVDRARLVLTAAAHLHASFWPNPRRLPXXXXXXXXXXXEG--RENHTGEHHQTSPN---ARNHLEGSRWYPQGLHEKGTFWSLEKRDPGDLSGLEEEYQKLLGRFRQLLPEAWFEGELSGGSG------GKGGC-GRGEASLGRRIAARARELDAAVHGSEDVSVSGSGGSSSDEVGERRSGRTLVHGDLKTWNVFFKKS---------------NGHGEEDAGATPGLGGRVKLIDWQ 672
            G+   ++ GAL + RA+ VL+AAAHLHASFWP P               +   R+   G   Q  P+     +H +G   Y +GLH++GTFWSLEKRD GDL+GLEEEYQKLLG FR LLP AWFE    GG          G C G  E  LGRR+AARA  LDAAVH + D  ++ SGG      G+R  GR+LVHGDLKTWNVFFK                 +G G +  G     GG+VK+IDWQ
Sbjct:   83 GQWPQLKVGALDLGRAKAVLSAAAHLHASFWPEPPAAAAGWEPRRHSQPQSPKRQEDHGREQQRHPDLGPGHHHCDGGGRYARGLHKQGTFWSLEKRDAGDLAGLEEEYQKLLGNFRPLLPAAWFESPHQGGDAVGDAARHPGVCAGADERHLGRRLAARALSLDAAVHANGDGVLASSGG------GKR--GRSLVHGDLKTWNVFFKTGGWAEAGEQGEGAAARDGGGVDAQGPAAAAGGKVKIIDWQ 324
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BLAST of mRNA_F-distichus_contig101448.114.1 vs. uniprot
Match: A0A6H5JKQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKQ9_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 4.060e-45
Identity = 114/244 (46.72%), Postives = 135/244 (55.33%), Query Frame = 1 
Query:   22 QDGALGVDRARLVLTAAAHLHASFWPNPRRLPXXXXXXXXXXXEG--RENHTGEHHQTSPN---ARNHLEGSRWYPQGLHEKGTFWSLEKRDPGDLSGLEEEYQKLLGRFRQLLPEAWFEGELSGGSG-GKGG-----CGRG-EASLGRRIAARARELDAAVHGSEDVSVSGSGGSSSDEVGERRSGRTLVHGDLKTWNVFFKKSN-----GHGEEDAGATPGLGG----------RVKLIDWQ 672
            Q GAL   RA+ VL+AAAHLHASFWP P               +   R+   G   Q  P+     +H +G   Y +GLH++GTFWSLEKRD GDL+GLEEEY+KL+  FR LLP AWFE    GG   G        C  G E  LGRR+AARA  LDAAVH + D  ++ SGG      G+R  GR+LVHGDLKTWNVFFK +      G GE  A    G G            VK+IDWQ
Sbjct:  220 QVGALDPGRAKAVLSAAAHLHASFWPEPPPAAGGWEPRGHCQPQSPQRQEDHGREQQRHPDLGSGHHHCDGEWRYARGLHKQGTFWSLEKRDAGDLAGLEEEYRKLMRNFRPLLPAAWFEAPQQGGDAVGDAARRPELCAEGDERHLGRRLAARALSLDAAVHANGDGVLASSGG------GKR--GRSLVHGDLKTWNVFFKTAGWAEPGGQGEGAAARGDGGGDAKGPAAAARRNVKIIDWQ 455
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig101448.114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDB8_ECTSI3.330e-5146.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKQ9_9PHAE4.060e-4546.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig101448contigF-distichus_contig101448:1075..1998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.0
Seed ortholog evalue1.9e-44
Seed eggNOG ortholog2880.D8LDB8
Hectar predicted targeting categoryother localisation
EggNOG OGs2E71V@1,2SDPS@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size672
Cds size672
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928930.250099-CDS-F-distichus_contig101448:1074..12131622928930.250099-CDS-F-distichus_contig101448:1074..1213Fucus distichus monoicousCDSF-distichus_contig101448 1075..1213 +
1690885071.064176-CDS-F-distichus_contig101448:1074..12131690885071.064176-CDS-F-distichus_contig101448:1074..1213Fucus distichus monoicousCDSF-distichus_contig101448 1075..1213 +
1622928930.268536-CDS-F-distichus_contig101448:1465..19981622928930.268536-CDS-F-distichus_contig101448:1465..1998Fucus distichus monoicousCDSF-distichus_contig101448 1466..1998 +
1690885071.0779276-CDS-F-distichus_contig101448:1465..19981690885071.0779276-CDS-F-distichus_contig101448:1465..1998Fucus distichus monoicousCDSF-distichus_contig101448 1466..1998 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig101448.114.1prot_F-distichus_contig101448.114.1Fucus distichus monoicouspolypeptideF-distichus_contig101448 1075..1998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig101448.114.1

>prot_F-distichus_contig101448.114.1 ID=prot_F-distichus_contig101448.114.1|Name=mRNA_F-distichus_contig101448.114.1|organism=Fucus distichus monoicous|type=polypeptide|length=224bp
MGRKNNVQDGALGVDRARLVLTAAAHLHASFWPNPRRLPPPPSSPSKKKE
EGRENHTGEHHQTSPNARNHLEGSRWYPQGLHEKGTFWSLEKRDPGDLSG
LEEEYQKLLGRFRQLLPEAWFEGELSGGSGGKGGCGRGEASLGRRIAARA
RELDAAVHGSEDVSVSGSGGSSSDEVGERRSGRTLVHGDLKTWNVFFKKS
NGHGEEDAGATPGLGGRVKLIDWQ
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mRNA from alignment at F-distichus_contig101448:1075..1998+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig101448.114.1 ID=mRNA_F-distichus_contig101448.114.1|Name=mRNA_F-distichus_contig101448.114.1|organism=Fucus distichus monoicous|type=mRNA|length=924bp|location=Sequence derived from alignment at F-distichus_contig101448:1075..1998+ (Fucus distichus monoicous)
ATGGGCCGGAAAAACAATGTTCAGGACGGCGCCCTGGGCGTCGATCGGGC
CAGGCTAGTTCTCACCGCAGCGGCACACCTGCACGCCTCCTTTTGGCCAA
ACCCTCGACGCTTGCCGCCGCCGCCATCATCACCATCGAGTGCCACCCGT
GGCAAGGCGCCTCCAGGTGACGTCGATCACCCTCCTCCCATGTTTGCGGC
AGGAAGCGGGACGACGGAGGGAAGTGGTTCGTCAGTCAACGATGCCGATC
GCGGCTTGAACACCGGCAGCGCGACGCGTTCGGTTAACGAACTGGGGGTG
TCCAGAGGCGTGGAAGGCGTGACCCCACCAGCGGAGCCTACAATGTCGGG
GACGGTTGTCGGAGGGACAGATTCACGCTGTTGGGAAGAAGAGAAGAAAG
AGGAGGGTAGAGAGAACCACACTGGAGAACATCATCAGACGAGTCCCAAC
GCTCGTAACCACCTCGAGGGCAGTCGATGGTACCCTCAGGGTCTCCACGA
AAAAGGCACCTTCTGGTCGCTGGAGAAGAGAGACCCCGGCGATCTCTCGG
GGCTCGAAGAAGAGTACCAGAAACTCCTCGGGCGATTCCGGCAGCTGCTG
CCGGAGGCTTGGTTTGAAGGAGAGCTCAGCGGCGGCAGCGGTGGTAAAGG
CGGTTGCGGGCGGGGGGAGGCTTCACTTGGCCGACGCATCGCAGCACGCG
CGCGGGAGCTGGACGCGGCGGTGCACGGCTCTGAGGATGTTTCGGTCAGC
GGTAGCGGGGGCAGTAGCAGTGATGAGGTTGGCGAAAGAAGAAGCGGAAG
AACCCTCGTTCACGGAGACCTCAAGACGTGGAACGTGTTCTTTAAGAAGA
GTAATGGCCACGGGGAGGAGGACGCTGGTGCTACCCCAGGCTTGGGTGGA
AGGGTCAAGCTCATCGACTGGCAG
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Coding sequence (CDS) from alignment at F-distichus_contig101448:1075..1998+

>mRNA_F-distichus_contig101448.114.1 ID=mRNA_F-distichus_contig101448.114.1|Name=mRNA_F-distichus_contig101448.114.1|organism=Fucus distichus monoicous|type=CDS|length=1344bp|location=Sequence derived from alignment at F-distichus_contig101448:1075..1998+ (Fucus distichus monoicous)
ATGGGCCGGAAAAACAATGTTCAGGACGGCGCCCTGGGCGTCGATCGGGC
CAGGCTAGTTCTCACCGCAGCGGCACACCTGCACGCCTCCTTTTGGCCAA
ACCCTCGACGCTTGCCGCCGCCGCCATCATCACCATCGAATGGGCCGGAA
AAACAATGTTCAGGACGGCGCCCTGGGCGTCGATCGGGCCAGGCTAGTTC
TCACCGCAGCGGCACACCTGCACGCCTCCTTTTGGCCAAACCCTCGACGC
TTGCCGCCGCCGCCATCATCACCATCGAAGAAGAAAGAGGAGGGTAGAGA
GAACCACACTGGAGAACATCATCAGACGAGTCCCAACGCTCGTAACCACC
TCGAGGGCAGTCGATGGTACCCTCAGGGTCTCCACGAAAAAGGCACCTTC
TGGTCGCTGGAGAAGAGAGACCCCGGCGATCTCTCGGGGCTCGAAGAAGA
GTACCAGAAACTCCTCGGGCGATTCCGGCAGCTGCTGCCGGAGGCTTGGT
TTGAAGGAGAGCTCAGCGGCGGCAGCGGTGGTAAAGGCGGTTGCGGGCGG
GGGGAGGCTTCACTTGGCCGACGCATCGCAGCACGCGCGCGGGAGCTGGA
CGCGGCGGTGCACGGCTCTGAGGATGTTTCGGTCAGCGGTAGCGGGGGCA
GTAGCAGTGATGAGGTTGGCGAAAGAAGAAGCGGAAGAACCCTCGTTCAC
GGAGACCTCAAGACGTGGAACGTGTTCTTTAAGAAGAGTAATGGCCACGG
GGAGGAGGACGCTGGTGCTACCCCAGGCTTGGGTGGAAGGGTCAAGCTCA
TCGACTGGCAGAGAAGAAAGAGGAGGGTAGAGAGAACCACACTGGAGAAC
ATCATCAGACGAGTCCCAACGCTCGTAACCACCTCGAGGGCAGTCGATGG
TACCCTCAGGGTCTCCACGAAAAAGGCACCTTCTGGTCGCTGGAGAAGAG
AGACCCCGGCGATCTCTCGGGGCTCGAAGAAGAGTACCAGAAACTCCTCG
GGCGATTCCGGCAGCTGCTGCCGGAGGCTTGGTTTGAAGGAGAGCTCAGC
GGCGGCAGCGGTGGTAAAGGCGGTTGCGGGCGGGGGGAGGCTTCACTTGG
CCGACGCATCGCAGCACGCGCGCGGGAGCTGGACGCGGCGGTGCACGGCT
CTGAGGATGTTTCGGTCAGCGGTAGCGGGGGCAGTAGCAGTGATGAGGTT
GGCGAAAGAAGAAGCGGAAGAACCCTCGTTCACGGAGACCTCAAGACGTG
GAACGTGTTCTTTAAGAAGAGTAATGGCCACGGGGAGGAGGACGCTGGTG
CTACCCCAGGCTTGGGTGGAAGGGTCAAGCTCATCGACTGGCAG
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