mRNA_F-distichus_contig1013.102.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig1013.102.1
Unique NamemRNA_F-distichus_contig1013.102.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig1013.102.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 1.090e-48
Identity = 115/369 (31.17%), Postives = 188/369 (50.95%), Query Frame = 1
Query:    7 RLNKAIYGLVQAGRCWEHKLCDDMTTIGFEQAKTDPCVFRKVVEGEAEMVVVVHVDDILAHAKDQATMGRFAAELGQKFKLEDMGDAGYYMGY-------TGCVESANALKGGRTAEPGGEGRNEEVSVPGGSGGAYVDGDEETSGHCVR-----------RTR---------CSKVLRKPGPAHKKAVVKTLQYLLHMKEGGITYG-GQGCGLCIEAYTDSNFGTCLDTRRSVSGAVLMLVKGAISWDLRVQEVTASGTSEVKYVAFSEVVKELLFLRQVQEFMEPSMRISAVDVFKDNEGTIKLATNKIASRRTKHIDAKHHLVRDASDARKVRVADVRSEDQYADLLAKPLGMQKFQKHAKFILNI 1029
            +LNK++YGL QA R W   L   +  +GF Q   D CVFR + EG   + +VVHVDDI +  +++    +F  +L     ++++GD  +Y G         G ++ +            G    +E+ +P G   +  D DEE      R           +TR          ++    P   H +A +  L Y++   + GIT+  G   GL +E + D+++ +    RRSVSG ++M   G ISW  R Q+     T+E +YV+ ++V+KE+LFLRQV  FM P   +  + VF+DN+G I+LA N I++  +KHID +HH +R+    +++ +  V S  Q+AD L K L    F+ H  +++++
Sbjct:   70 KLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMSM 437          
BLAST of mRNA_F-distichus_contig1013.102.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 1.290e-48
Identity = 122/375 (32.53%), Postives = 184/375 (49.07%), Query Frame = 1
Query:    7 RLNKAIYGLVQAGRCWEHKLCDDMTTIGFEQAKTDPCVFRKVVEGEAEMVVVVHVDDILAHAKDQATMGRFAAELGQKFKLEDMGDAGYYMGYTGCVESANALKGGRT-----------AEPGGEGRNEEVSVPGGSGGAYVDGDEE---------------------TSGHCVRRTRC-SKVLRKPGPAHKKAVVKTLQYLLHMKEGGITYG-GQGCGLCIEAYTDSNFGTCLDTRRSVSGAVLMLVKGAISWDLRVQEVTASGTSEVKYVAFSEVVKELLFLRQVQEFMEPSMRISAVDVFKDNEGTIKLATNKIASRRTKHIDAKHHLVRDASDARKVRVADVRSEDQYADLLAKPLGMQKFQKHAKFILNI 1029
            +L K++YGL QA R W   L   +  +GFEQ   D CVFR + +G   +++VVHVDDI A   ++    +F A+L +   ++++G+  +Y   +GC    N   G  T           AE G  G     SVP  SG    D D +                     T        R  ++    P   H  A +  L Y       GI++  G   G  ++ Y D++F +    RRSVSG ++    GA+SW  R Q+     T+E +YVA  +VVKE+LFLRQ+  FM P + +  + VF+DN+G I+LA N I++  +KHID +HH +R+  + +++ V  V S  Q AD L K L    F+ H  F++N+
Sbjct:   94 KLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWY---SGCFYERNKETGRLTISQQTFTDELAAEYGVVGGR---SVPMSSGVKLSDFDADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFVMNL 461          
BLAST of mRNA_F-distichus_contig1013.102.1 vs. uniprot
Match: A0A6H5KCN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN6_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 4.770e-48
Identity = 120/370 (32.43%), Postives = 189/370 (51.08%), Query Frame = 1
Query:    7 RLNKAIYGLVQAGRCWEHKLCDDMTTIGFEQAKTDPCVFRKVVEGEAEMVVVVHVDDILAHAKDQATMGRFAAELGQKFKLEDMGDAGYYMGYTGCVESANAL-KGGRTA--EPGGEGRNEEVSVPGGSGGAYVDGD-------EETSGHCVRRT-------------------RCSKVLRKPGPAHKKAVVKTLQYLLHMKEGGITYGGQGCGLCIEAYTDSNFGTCLDTRRSVSGAVLMLVKGAISWDLRVQEVTASGTSEVKYVAFSEVVKELLFLRQVQEFMEPSMRISAVDVFKDNEGTIKLATNKIASRRTKHIDAKHHLVRDASDARKVRVADVRSEDQYADLLAKPLGMQKFQKHAKFILNI 1029
            ++ +A+YGL Q+GR W  +  D + + G+EQ + DPC+FRKVV+GE   ++V++VDDI+  A ++       A L ++F ++D+GD  +Y G    V+  N   K  +TA  E      N   + P     A VD D       E +    VR T                   +  K+   P      A+V+ + YL   K+ GITY  +G GL ++ + DS++      RRS +G  + +    +    + Q VTA  T+E +Y+A  E VKE LF+R V  F+ P    + + V +DNEG + L  N  +S R+KHID + H +R+   A K+    V +E+Q+AD+L K LG  K + H K ++N+
Sbjct:   47 KVERALYGLKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEERE-ELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNRFNVTTTAP---TPAVVDDDLGPKRDDESSVDKPVRETIGCLMWLLFMRPDIALPLNKLQKIAHSPTERMWNALVRIMSYLNETKDLGITYV-RGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVLSFIAPETSGATIRVLEDNEGALALVQNPFSSARSKHIDVRFHFIRELFKAGKITADYVSTEEQHADMLTKVLGRGKLEYHRKALMNL 411          
BLAST of mRNA_F-distichus_contig1013.102.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 2.310e-47
Identity = 115/369 (31.17%), Postives = 188/369 (50.95%), Query Frame = 1
Query:    7 RLNKAIYGLVQAGRCWEHKLCDDMTTIGFEQAKTDPCVFRKVVEGEAEMVVVVHVDDILAHAKDQATMGRFAAELGQKFKLEDMGDAGYYMGY-------TGCVESANALKGGRTAEPGGEGRNEEVSVPGGSGGAYVDGDEETSGHCVR-----------RTR---------CSKVLRKPGPAHKKAVVKTLQYLLHMKEGGITYG-GQGCGLCIEAYTDSNFGTCLDTRRSVSGAVLMLVKGAISWDLRVQEVTASGTSEVKYVAFSEVVKELLFLRQVQEFMEPSMRISAVDVFKDNEGTIKLATNKIASRRTKHIDAKHHLVRDASDARKVRVADVRSEDQYADLLAKPLGMQKFQKHAKFILNI 1029
            +LNK++YGL QA R W   L   +  +GF Q   D CVFR + EG   + +VVHVDDI +  +++    +F  +L     ++++GD  +Y G         G ++ +            G    +E+ +P G   +  D DEE      R           +TR          ++    P   H +A +  L Y++   + GIT+  G   GL +E + D+++ +    RRSVSG ++M   G ISW  R Q+     T+E +YV+ ++V+KE+LFLRQV  FM P   +  + VF+DN+G I+LA N I++  +KHID +HH +R+    +++ +  V S  Q+AD L K L    F+ H  +++++
Sbjct:  244 KLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMSM 611          
BLAST of mRNA_F-distichus_contig1013.102.1 vs. uniprot
Match: A0A6H5JG40_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG40_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 1.390e-46
Identity = 123/375 (32.80%), Postives = 187/375 (49.87%), Query Frame = 1
Query:    7 RLNKAIYGLVQAGRCWEHKLCDDMTTIGFEQAKTDPCVFRKVVEGEAEMVVVVHVDDILAHAKDQATMGRFAAELGQKFKLEDMGDAGYYMGYTGCVESANALKGGRT-----------AEPGGEGRNEEVSVPGGSGGAY--VDGDEETSGHCVR-----------RTR---------CSKVLRKPGPAHKKAVVKTLQYLLHMKEGGITYG-GQGCGLCIEAYTDSNFGTCLDTRRSVSGAVLMLVKGAISWDLRVQEVTASGTSEVKYVAFSEVVKELLFLRQVQEFMEPSMRISAVDVFKDNEGTIKLATNKIASRRTKHIDAKHHLVRDASDARKVRVADVRSEDQYADLLAKPLGMQKFQKHAKFILNI 1029
            +L K++YGL QA R W   L   +  +GFEQ   D CVFR + +G   +++VVHVDDI A   ++    +F A+L +   ++++G+  +Y   +GC    N   G  T           AE G  G     SVP  SG      D DE  +    R           +TR          ++    P   H  A +  L Y       GI++  G   G  ++ Y D++F +    RRSVSG ++    GA+SW  R Q+     T+E +YVA  +VVKE+LFLRQ+  FM P + +  + +F+DN+G I+LA N I++  +KHID +HH +R+  + +++ V  V S  Q AD L K L    F+ H  F++N+
Sbjct:  924 KLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWY---SGCFYERNKETGRLTISQQTFTDELAAEYGVVGGR---SVPMSSGVKLSDFDADEVATDFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAFESHRDFVMNL 1291          
BLAST of mRNA_F-distichus_contig1013.102.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 2.740e-46
Identity = 122/375 (32.53%), Postives = 184/375 (49.07%), Query Frame = 1
Query:    7 RLNKAIYGLVQAGRCWEHKLCDDMTTIGFEQAKTDPCVFRKVVEGEAEMVVVVHVDDILAHAKDQATMGRFAAELGQKFKLEDMGDAGYYMGYTGCVESANALKGGRT-----------AEPGGEGRNEEVSVPGGSGGAYVDGDEE---------------------TSGHCVRRTRC-SKVLRKPGPAHKKAVVKTLQYLLHMKEGGITYG-GQGCGLCIEAYTDSNFGTCLDTRRSVSGAVLMLVKGAISWDLRVQEVTASGTSEVKYVAFSEVVKELLFLRQVQEFMEPSMRISAVDVFKDNEGTIKLATNKIASRRTKHIDAKHHLVRDASDARKVRVADVRSEDQYADLLAKPLGMQKFQKHAKFILNI 1029
            +L K++YGL QA R W   L   +  +GFEQ   D CVFR + +G   +++VVHVDDI A   ++    +F A+L +   ++++G+  +Y   +GC    N   G  T           AE G  G     SVP  SG    D D +                     T        R  ++    P   H  A +  L Y       GI++  G   G  ++ Y D++F +    RRSVSG ++    GA+SW  R Q+     T+E +YVA  +VVKE+LFLRQ+  FM P + +  + VF+DN+G I+LA N I++  +KHID +HH +R+  + +++ V  V S  Q AD L K L    F+ H  F++N+
Sbjct: 1430 KLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWY---SGCFYERNKETGRLTISQQTFTDELAAEYGVVGGR---SVPMSSGVKLSDFDADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFVMNL 1797          
BLAST of mRNA_F-distichus_contig1013.102.1 vs. uniprot
Match: A0A6H5K4U5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U5_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 4.930e-46
Identity = 117/351 (33.33%), Postives = 180/351 (51.28%), Query Frame = 1
Query:   10 LNKAIYGLVQAGRCWEHKLCDDMTTIGFEQAKTDPCVFRKVVEGEAEMVVVVHVDDILAHAKDQATMGRFAAELGQKFKLEDMGDAGYYMGYTGCVESANALKGGRTA--EPGGEGRNEEVSVPGG-----SGGAYV---DGDEETSGHCVRRTRCSKVLRKPGPAHKKAVVKTLQYLLHMKEGGITYG-GQGCGLCIEAYTDSNFGTCLDTRRSVSGAVLMLVKGAISWDLRVQEVTASGTSEVKYVAFSEVVKELLFLRQVQEFMEPSMRISAVDVFKDNEGTIKLATNKIASRRTKHIDAKHHLVRDASDARKVRVADVRSEDQYADLLAKPLGMQKFQKHAKFILNI 1029
            L K++YGL Q+ R W   L   +  +GFEQ   D CVFR +  G   +++VVHVDDI A   ++    +F A+L +   ++++G+  +Y   +GC+   +   G  T   +   +    E  VPGG     S G  +   D DEE +    R              H    +  L Y       G+++  G   G  ++ Y D++F +    RRSVSG ++    G +SW  R Q+     T+E +YVA  +VVKE+LFLRQV  FM P + +  + VF+DN+G I+LA N I++  +KHID +HH +R+  + ++V V  V S  Q AD L K L    F+ H  F++N+
Sbjct: 1236 LGKSLYGLRQSPRQWHAMLKRCLVALGFEQCMADACVFRLIEGGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWY---SGCLYERSKETGRLTISQQTFADELAAEYGVPGGKSVPMSSGVKLSDFDADEEATDFPFREL-----------VHWDEAMAILGYAKRTSYMGVSFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGVVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQVWRFMLPKVSMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEVSVIHVPSPYQRADFLTKSLPKDAFESHLDFVMNL 1571          
BLAST of mRNA_F-distichus_contig1013.102.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 1.130e-45
Identity = 114/369 (30.89%), Postives = 188/369 (50.95%), Query Frame = 1
Query:    7 RLNKAIYGLVQAGRCWEHKLCDDMTTIGFEQAKTDPCVFRKVVEGEAEMVVVVHVDDILAHAKDQATMGRFAAELGQKFKLEDMGDAGYYMGY-------TGCVESANALKGGRTAEPGGEGRNEEVSVPGGSGGAYVDGDEETSGHCVR-----------RTR---------CSKVLRKPGPAHKKAVVKTLQYLLHMKEGGITYG-GQGCGLCIEAYTDSNFGTCLDTRRSVSGAVLMLVKGAISWDLRVQEVTASGTSEVKYVAFSEVVKELLFLRQVQEFMEPSMRISAVDVFKDNEGTIKLATNKIASRRTKHIDAKHHLVRDASDARKVRVADVRSEDQYADLLAKPLGMQKFQKHAKFILNI 1029
            +LNK++YGL QA R W   L   +  +GF Q   D CVFR + EG   + +VVHVDDI +  +++    +F  +L     ++++GD  +Y G         G ++ +            G    +E+ +P G   +  D DEE      R           +TR          ++    P   H +A +  L Y++   + GIT+  G   GL +E + D+++ +    RRSVSG ++M   G ISW  R Q+     T+E +YV+ ++V+KE+LFLRQV  FM P   +  + VF+DN+G I+LA N I++  +KHID +HH +R+    +++ +  V S  Q+A+ L K L    F+ H  +++++
Sbjct:  765 KLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHAEFLTKALHAGDFEFHRNYVMSM 1132          
BLAST of mRNA_F-distichus_contig1013.102.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 4.880e-45
Identity = 117/373 (31.37%), Postives = 186/373 (49.87%), Query Frame = 1
Query:    7 RLNKAIYGLVQAGRCWEHKLCDDMTTIGFEQAKTDPCVFRKVVEGEAEMVVVVHVDDILAHAKDQATMGRFAAELGQKFKLEDMGDAGYYMG--YTGCVE------SANALKGGRTAEPGGE-GRNEEVSVPGGSGGAYVDGDEETSGHCV-------------RRTR---------CSKVLRKPGPAHKKAVVKTLQYLLHMKEGGITYG-GQGCGLCIEAYTDSNFGTCLDTRRSVSGAVLMLVKGAISWDLRVQEVTASGTSEVKYVAFSEVVKELLFLRQVQEFMEPSMRISAVDVFKDNEGTIKLATNKIASRRTKHIDAKHHLVRDASDARKVRVADVRSEDQYADLLAKPLGMQKFQKHAKFILNI 1029
            +L K++YGL QA R W   L   +  +GF Q   D CVFR + EG   M++VVHVDDI A  + +    +F  +L +   ++++G+  +Y    Y   VE      S         AE G E GR    SVP        D DE  +   V              +TR          ++    P   H KA +  L Y+      GIT+  G   G+ ++ + D+++ +    RRSVSG ++M   G ++W  R Q+     T+E +YVA ++V+KE+LFLRQV  FM P   +  + VF+DN+G I++  N I +  +KHID +HH +R+  + +++ +  V ++ Q+AD L K +  + F  H  F++N+
Sbjct:    8 KLCKSLYGLKQASRHWHAHLTRCLLLLGFLQCLADACVFRLMEEGRVIMIIVVHVDDIFAVGQKERC-DKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGR----SVPLPVSVKLTDFDENEASADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESFALHRDFVMNL 375          
BLAST of mRNA_F-distichus_contig1013.102.1 vs. uniprot
Match: A0A6H5JWY8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWY8_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 1.250e-44
Identity = 113/369 (30.62%), Postives = 189/369 (51.22%), Query Frame = 1
Query:    1 VGRLNKAIYGLVQAGRCWEHKLCDDMTTIGFEQAKTDPCVFRKVVEGEAEMVVVVHVDDILAHAKDQATMGRFAAELGQKFKLEDMGDAGYYMGYTGCVESANAL-KGGRTAEPGGEGRNEEVSVPGGSGGAY-------------VDGDEETSGHCVRRTRCS------------KVLRKPGPAHKKAVVKTLQYLLHMKEGGITYGGQGCGLCIEAYTDSNFGTCLDTRRSVSGAVLMLVKGAISWDLRVQEVTASGTSEVKYVAFSEVVKELLFLRQVQEFMEPSMRISAVDVFKDNEGTIKLATNKIASRRTKHIDAKHHLVRDASDARKVRVADVRSEDQYADLLAKPLGMQKFQKHAKFILNI 1029
            V ++ +A+Y L Q+GR W  +  D +   G+EQ + DPCVFRKVV+GE   ++V++VDDIL  A D+       A L +KF ++D+G+  +Y G    ++  N + K  +TA      +  +V+    +  A              VD     +  C+  T+ +            K+ + P      A+V+ + YL   K+ GITY  +G GL +  + D+++      RRS +G  + +    +    + Q VTA  TSE +Y+A  E VKE LF+R V  F+ P    + + V +DN+G + +  N  +S R+KHID + H +R+   + K+    V + +Q+AD+L K LG +K + H K ++N+
Sbjct:    5 VVKVERALYRLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGEREELFASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAYVESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNKLQKIAQSPTGRIWNALVRIMSYLNFTKDFGITYV-RGSGLDLSVFVDASYADNEVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTSEAEYMAAGEGVKEALFVRGVLSFIAPETSGAKIKVLEDNKGALAMFENPFSSARSKHIDVRFHFIRELFKSGKITAEYVPTGEQHADMLTKVLGREKSEYHRKALMNL 371          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig1013.102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLN0_9PHAE1.090e-4831.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JFG2_9PHAE1.290e-4832.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KCN6_9PHAE4.770e-4832.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE2.310e-4731.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JG40_9PHAE1.390e-4632.80Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5J4N2_9PHAE2.740e-4632.53Integrase catalytic domain-containing protein n=18... [more]
A0A6H5K4U5_9PHAE4.930e-4633.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K2R1_9PHAE1.130e-4530.89Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5L4G9_9PHAE4.880e-4531.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWY8_9PHAE1.250e-4430.62Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig1013contigF-distichus_contig1013:5114..6247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.1
Seed ortholog evalue1.3e-31
Seed eggNOG ortholog67593.Physo139221
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size1035
Cds size1035
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928929.1552544-CDS-F-distichus_contig1013:5113..53961622928929.1552544-CDS-F-distichus_contig1013:5113..5396Fucus distichus monoicousCDSF-distichus_contig1013 5114..5396 +
1690885070.53079-CDS-F-distichus_contig1013:5113..53961690885070.53079-CDS-F-distichus_contig1013:5113..5396Fucus distichus monoicousCDSF-distichus_contig1013 5114..5396 +
1622928929.1711204-CDS-F-distichus_contig1013:5495..62471622928929.1711204-CDS-F-distichus_contig1013:5495..6247Fucus distichus monoicousCDSF-distichus_contig1013 5496..6247 +
1690885070.5456576-CDS-F-distichus_contig1013:5495..62471690885070.5456576-CDS-F-distichus_contig1013:5495..6247Fucus distichus monoicousCDSF-distichus_contig1013 5496..6247 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig1013.102.1prot_F-distichus_contig1013.102.1Fucus distichus monoicouspolypeptideF-distichus_contig1013 5114..6247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig1013.102.1

>prot_F-distichus_contig1013.102.1 ID=prot_F-distichus_contig1013.102.1|Name=mRNA_F-distichus_contig1013.102.1|organism=Fucus distichus monoicous|type=polypeptide|length=345bp
VGRLNKAIYGLVQAGRCWEHKLCDDMTTIGFEQAKTDPCVFRKVVEGEAE
MVVVVHVDDILAHAKDQATMGRFAAELGQKFKLEDMGDAGYYMGYTGCVE
SANALKGGRTAEPGGEGRNEEVSVPGGSGGAYVDGDEETSGHCVRRTRCS
KVLRKPGPAHKKAVVKTLQYLLHMKEGGITYGGQGCGLCIEAYTDSNFGT
CLDTRRSVSGAVLMLVKGAISWDLRVQEVTASGTSEVKYVAFSEVVKELL
FLRQVQEFMEPSMRISAVDVFKDNEGTIKLATNKIASRRTKHIDAKHHLV
RDASDARKVRVADVRSEDQYADLLAKPLGMQKFQKHAKFILNIV*
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mRNA from alignment at F-distichus_contig1013:5114..6247+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig1013.102.1 ID=mRNA_F-distichus_contig1013.102.1|Name=mRNA_F-distichus_contig1013.102.1|organism=Fucus distichus monoicous|type=mRNA|length=1134bp|location=Sequence derived from alignment at F-distichus_contig1013:5114..6247+ (Fucus distichus monoicous)
GTGGGACGGCTGAACAAGGCCATTTATGGACTGGTACAGGCGGGGAGGTG CTGGGAACACAAATTATGTGACGACATGACGACGATTGGATTCGAGCAGG CAAAAACGGATCCGTGTGTGTTCCGCAAGGTCGTTGAAGGCGAGGCGGAG ATGGTGGTGGTCGTACACGTAGACGACATTCTTGCCCACGCCAAAGACCA AGCGACGATGGGTAGATTCGCGGCTGAGCTTGGACAGAAGTTCAAATTGG AGGACATGGGCGACGCCGGGTACTACATGGGCTGTCACATCACATGAAAC CGCAAGGTGCGAGTTGAAGCTCGACCAACACTTGTACGTAGAGTCGATGG CAAAAAGGTTTGACGTCAAGAAGGCAACTAAGATACCGGCTGCGTCGAGA GTGCCAACGCTCTCAAAGGCGGACGCACCGCGGAACCCGGAGGAGAAGGA AGAAATGAGGAAGTTTCCGTACCGGGAGGCAGTGGAGGCGCTTATGTAGA CGGCGACGAGGAGACGTCTGGACATTGCGTGCGCCGTACGCGCTGTAGCA AGGTTCTGCGAAAGCCTGGGCCGGCGCATAAGAAAGCAGTGGTGAAGACC TTGCAGTATCTCCTTCACATGAAAGAAGGGGGGATTACGTACGGTGGACA GGGCTGTGGACTCTGCATAGAAGCATACACGGACTCGAATTTCGGAACCT GCCTGGATACGAGGCGATCAGTTTCGGGTGCGGTGTTGATGCTGGTGAAG GGGGCGATCAGCTGGGACTTAAGGGTTCAAGAAGTGACAGCATCTGGTAC CTCGGAGGTAAAGTACGTTGCTTTCTCAGAGGTGGTAAAGGAACTTCTAT TTTTGAGACAGGTACAGGAGTTCATGGAACCGTCGATGAGGATCAGTGCA GTGGATGTGTTCAAAGACAATGAGGGGACCATCAAGCTGGCAACAAACAA GATTGCTAGTCGTAGGACTAAGCACATTGATGCGAAACACCATCTGGTGA GGGACGCGTCTGACGCGCGAAAGGTTAGAGTAGCGGATGTGAGGTCGGAA GATCAGTACGCGGACTTGCTCGCCAAGCCGCTAGGCATGCAGAAGTTTCA AAAACACGCGAAATTTATCCTAAATATAGTGTGA
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Coding sequence (CDS) from alignment at F-distichus_contig1013:5114..6247+

>mRNA_F-distichus_contig1013.102.1 ID=mRNA_F-distichus_contig1013.102.1|Name=mRNA_F-distichus_contig1013.102.1|organism=Fucus distichus monoicous|type=CDS|length=2070bp|location=Sequence derived from alignment at F-distichus_contig1013:5114..6247+ (Fucus distichus monoicous)
GTGGGACGGCTGAACAAGGCCATTTATGGACTGGTACAGGCGGGGAGGTG
CTGGGAACACAAATTATGTGACGACATGACGACGATTGGATTCGAGCAGG
CAAAAACGGATCCGTGTGTGTTCCGCAAGGTCGTTGAAGGCGAGGCGGAG
ATGGTGGTGGTCGTACACGTAGACGACATTCTTGCCCACGCCAAAGACCA
AGCGACGATGGGTAGATTCGCGGCTGAGCTTGGACAGAAGTTCAAATTGG
AGGACATGGGCGACGCCGGGTACTACATGGGCTGTGGGACGGCTGAACAA
GGCCATTTATGGACTGGTACAGGCGGGGAGGTGCTGGGAACACAAATTAT
GTGACGACATGACGACGATTGGATTCGAGCAGGCAAAAACGGATCCGTGT
GTGTTCCGCAAGGTCGTTGAAGGCGAGGCGGAGATGGTGGTGGTCGTACA
CGTAGACGACATTCTTGCCCACGCCAAAGACCAAGCGACGATGGGTAGAT
TCGCGGCTGAGCTTGGACAGAAGTTCAAATTGGAGGACATGGGCGACGCC
GGGTACTACATGGGCTATACCGGCTGCGTCGAGAGTGCCAACGCTCTCAA
AGGCGGACGCACCGCGGAACCCGGAGGAGAAGGAAGAAATGAGGAAGTTT
CCGTACCGGGAGGCAGTGGAGGCGCTTATGTAGACGGCGACGAGGAGACG
TCTGGACATTGCGTGCGCCGTACGCGCTGTAGCAAGGTTCTGCGAAAGCC
TGGGCCGGCGCATAAGAAAGCAGTGGTGAAGACCTTGCAGTATCTCCTTC
ACATGAAAGAAGGGGGGATTACGTACGGTGGACAGGGCTGTGGACTCTGC
ATAGAAGCATACACGGACTCGAATTTCGGAACCTGCCTGGATACGAGGCG
ATCAGTTTCGGGTGCGGTGTTGATGCTGGTGAAGGGGGCGATCAGCTGGG
ACTTAAGGGTTCAAGAAGTGACAGCATCTGGTACCTCGGAGGTAAAGTAC
GTTGCTTTCTCAGAGGTGGTAAAGGAACTTCTATTTTTGAGACAGGTACA
GGAGTTCATGGAACCGTCGATGAGGATCAGTGCAGTGGATGTGTTCAAAG
ACAATGAGGGGACCATCAAGCTGGCAACAAACAAGATTGCTAGTCGTAGG
ACTAAGCACATTGATGCGAAACACCATCTGGTGAGGGACGCGTCTGACGC
GCGAAAGGTTAGAGTAGCGGATGTGAGGTCGGAAGATCAGTACGCGGACT
TGCTCGCCAAGCCGCTAGGCATGCAGAAGTTTCAAAAACACGCGAAATTT
ATCCTAAATATAGTGTGAATACCGGCTGCGTCGAGAGTGCCAACGCTCTC
AAAGGCGGACGCACCGCGGAACCCGGAGGAGAAGGAAGAAATGAGGAAGT
TTCCGTACCGGGAGGCAGTGGAGGCGCTTATGTAGACGGCGACGAGGAGA
CGTCTGGACATTGCGTGCGCCGTACGCGCTGTAGCAAGGTTCTGCGAAAG
CCTGGGCCGGCGCATAAGAAAGCAGTGGTGAAGACCTTGCAGTATCTCCT
TCACATGAAAGAAGGGGGGATTACGTACGGTGGACAGGGCTGTGGACTCT
GCATAGAAGCATACACGGACTCGAATTTCGGAACCTGCCTGGATACGAGG
CGATCAGTTTCGGGTGCGGTGTTGATGCTGGTGAAGGGGGCGATCAGCTG
GGACTTAAGGGTTCAAGAAGTGACAGCATCTGGTACCTCGGAGGTAAAGT
ACGTTGCTTTCTCAGAGGTGGTAAAGGAACTTCTATTTTTGAGACAGGTA
CAGGAGTTCATGGAACCGTCGATGAGGATCAGTGCAGTGGATGTGTTCAA
AGACAATGAGGGGACCATCAAGCTGGCAACAAACAAGATTGCTAGTCGTA
GGACTAAGCACATTGATGCGAAACACCATCTGGTGAGGGACGCGTCTGAC
GCGCGAAAGGTTAGAGTAGCGGATGTGAGGTCGGAAGATCAGTACGCGGA
CTTGCTCGCCAAGCCGCTAGGCATGCAGAAGTTTCAAAAACACGCGAAAT
TTATCCTAAATATAGTGTGA
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