mRNA_F-distichus_contig100608.54.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig100608.54.1 vs. uniprot
Match: A0A6H5JRC6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC6_9PHAE) HSP 1 Score: 139 bits (349), Expect = 4.400e-35 Identity = 67/163 (41.10%), Postives = 100/163 (61.35%), Query Frame = 1
Query: 55 PKDKLVIGTKMSYKQKNGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSTASIWMLLAMAATKDGELRHFDAEQAFLKADTDEEI*IEIPEEFQEFPAAVGRLNNAIYGLVQVGRCWNNKFCDDMTATGFEQAKVDPCVFRKVIDGEAEMVVVVHVDDIL 543
P+ + +G+K + K ++GKIEK+K RLVA+G WQ+ V Y +SP P + SI ++LA+A+ K L H+D +QA+ A DEE+ +++P + + + AIYGL GR W D + GFEQ K DPCVFRK++D M++V++VDDIL
Sbjct: 410 PEGRRPVGSKWCFSWKTNKEGKIEKFKARLVARGLWQIPNVDYFHSFSPCPLSVSIKLMLAVASKKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKHSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDIL 572
BLAST of mRNA_F-distichus_contig100608.54.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 139 bits (350), Expect = 7.700e-35 Identity = 74/179 (41.34%), Postives = 109/179 (60.89%), Query Frame = 1
Query: 1 ETEMLGMVENCVYKQVARPKDKLVIGTKMSYKQKNGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSTASIWMLLAMAATKDGELRHFDAEQAFLKADTDEEI*IEIPEEFQEFPAAVGRLNNAIYGLVQVGRCWNNKFCDDMTATGFEQAKVDPCVFRKVIDGEAEMVVVVHVDD 537
E E+ + V+++V RP+D+ +IG+K +K K G DG++EKYK RLVAQGF QVEG+ Y E ++P + SI +LLA+AA D E+ D + AFL + +EEI +++P + AV RL A+YGL Q R W K ++ GF + + D CVF K +D ++ V+VDD
Sbjct: 1015 EAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGFTRLQADHCVFYKNMDRHPP-IIAVYVDD 1192
BLAST of mRNA_F-distichus_contig100608.54.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR) HSP 1 Score: 135 bits (339), Expect = 2.040e-33 Identity = 77/179 (43.02%), Postives = 108/179 (60.34%), Query Frame = 1
Query: 7 EMLGMVENCVYKQVARPKDKLVIGTKMSYKQKNGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSTASIWMLLAMAATKDGELRHFDAEQAFLKADTDEEI*IEIPEEFQEFPAAVGRLNNAIYGLVQVGRCWNNKFCDDMTATGFEQAKVDPCVFRKVIDGEAEMVVVVHVDDIL 543
E+L V+ +Y +V RP+D+ V+G K ++ K G DG+IEKYK R+VA+GF QVEGV YT+ ++P ASI LLA+AA D E+ D + AFL + DEEI + P FQ V +L A+YGL Q R W K + + GF ++ D VF K DG ++V V++DD+L
Sbjct: 304 ELLTFVKAELYDEVERPRDRKVVGCKWVFRIKRGPDGEIEKYKARVVAKGFTQVEGVDYTDTFAPVTKFASIRALLALAAKLDLEIHQMDVKSAFLNGNLDEEIFMACPPGFQGARNIVWQLRKALYGLKQASREWYKKIRAEFESLGFTRSNADHSVFYKNEDGVL-LIVAVYIDDML 481
BLAST of mRNA_F-distichus_contig100608.54.1 vs. uniprot
Match: A0A6H5JLS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS1_9PHAE) HSP 1 Score: 132 bits (333), Expect = 7.560e-33 Identity = 68/163 (41.72%), Postives = 97/163 (59.51%), Query Frame = 1
Query: 55 PKDKLVIGTKMSYKQKNGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSTASIWMLLAMAATKDGELRHFDAEQAFLKADTDEEI*IEIPEEFQEFPAAVGRLNNAIYGLVQVGRCWNNKFCDDMTATGFEQAKVDPCVFRKVIDGEAEMVVVVHVDDIL 543
P+ + + K + K +GKI K+K RLVA+GF ++ V Y SP PS+ASI ++LA+A K L H+D +QA+ A DEEI + +P + +G+ AIYGL Q GR W D + GFEQ K DPCVFRK++D M++V++VDD+L
Sbjct: 201 PEGRRPVSPKWCFSWKTNNEGKIHKFKARLVARGFSKIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEIFLRLPAGCGDKSHKIGKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDML 363
BLAST of mRNA_F-distichus_contig100608.54.1 vs. uniprot
Match: A0A6H5KFN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN5_9PHAE) HSP 1 Score: 130 bits (326), Expect = 2.760e-32 Identity = 65/144 (45.14%), Postives = 91/144 (63.19%), Query Frame = 1
Query: 112 DGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSTASIWMLLAMAATKDGELRHFDAEQAFLKADTDEEI*IEIPEEFQEFPAAVGRLNNAIYGLVQVGRCWNNKFCDDMTATGFEQAKVDPCVFRKVIDGEAEMVVVVHVDDIL 543
+GKI+K+K RLVA+GF Q+ V Y SP PS+ASI ++LA+A K L H+D +QA+ A DEE+ +++P + + + AIYGL Q GR W D + GFEQ K DPCVFRK++D M++V++VDDIL
Sbjct: 95 EGKIDKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDIL 238
BLAST of mRNA_F-distichus_contig100608.54.1 vs. uniprot
Match: A0A7D9HXK4_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HXK4_PARCT) HSP 1 Score: 129 bits (325), Expect = 1.690e-31 Identity = 71/184 (38.59%), Postives = 115/184 (62.50%), Query Frame = 1
Query: 1 ETEMLGMVENCVYKQVARPKDKLVIGTKMSYKQKNGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSTASIWMLLAMAATKDGELRHFDAEQAFLKADTDEEI*IEIPEEF--QEFPAAVGRLNNAIYGLVQVGRCWNNKFCDDMTATGFEQAKVDPCVFRKVI-DGEAEMVVVVHVDDIL 543
++E ++EN ++ V+ PK K V+G+K +K K ++G +++YK RLVAQG+ Q EGV Y+E +SP +I LLA++ K+ E+ D + AFL+ + EEI + P+ + +E P V +L +IYGL Q RCWNN + ++G++Q + DPC++ K I D +++ +HVDDIL
Sbjct: 743 DSEYNSLIENETWELVSLPKGKNVVGSKWVFKVKRDENGCVQRYKARLVAQGYTQAEGVDYSEVFSPVVRNTTIRSLLALSNAKNWEVHQMDVKTAFLQGNL-EEIYMRQPDGYVNKELPNHVCKLKKSIYGLKQSARCWNNAIDTFLKSSGYKQMESDPCLYMKSIRDQNGVIILSIHVDDIL 925
BLAST of mRNA_F-distichus_contig100608.54.1 vs. uniprot
Match: A0A6H5KFJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ3_9PHAE) HSP 1 Score: 124 bits (312), Expect = 1.890e-31 Identity = 66/157 (42.04%), Postives = 93/157 (59.24%), Query Frame = 1
Query: 55 PKDKLVIGTKMSYKQKNGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSTASIWMLLAMAATKDGELRHFDAEQAFLKADTDEEI*IEIPEEFQEFPAAVGRLNNAIYGLVQVGRCWNNKFCDDMTATGFEQAKVDPCVFRKVIDGEAEMVVVV 525
P+ + + +K + K +DGKIEK+K RLVA+GF ++ V Y SP PS+ASI ++LA+A K +L H+D +QAF A DE++ + +P E V + AIYGL Q GR W D + GFEQ K DPCVFRK+ D M++V+
Sbjct: 157 PEGRRPVSSKWRFTWKTNKDGKIEKFKARLVARGFSKIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVVVMIIVI 313
BLAST of mRNA_F-distichus_contig100608.54.1 vs. uniprot
Match: A0A7M6DPI8_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M6DPI8_9CNID) HSP 1 Score: 128 bits (321), Expect = 5.970e-31 Identity = 71/186 (38.17%), Postives = 107/186 (57.53%), Query Frame = 1
Query: 1 ETEMLGMVENCVYKQVARPKDKLVIGTKMSYKQKNGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSTASIWMLLAMAATKDGELRHFDAEQAFLKADTDEEI*IEIPEEF--QEFPAAVGRLNNAIYGLVQVGRCWNNKFCDDMTATGFEQAKVDPCVFRKVI---DGEAEMVVVVHVDDIL 543
+ E ++EN +K V P DK ++G+K +K K G DGKI++ K RLVAQG+ Q G+ Y + ++P SI +LA+ D EL D + AFL D +E+I ++ PE F ++ P +L +IYGL Q RCWN K + + +GF + DPC++ K I D ++V V+VDD+L
Sbjct: 796 QNEYDSLIENETWKLVEMPPDKNLVGSKWVFKHKRGADGKIQRCKARLVAQGYSQKSGIDYNDVFAPVAKYNSIRSVLAITNELDLELHQMDVKTAFLNGDLEEDIFMKQPEGFINRDNPNMACKLQKSIYGLKQSARCWNEKMDEFLKESGFTRNDADPCIYHKQITKGDKSFTLIVAVYVDDLL 981
BLAST of mRNA_F-distichus_contig100608.54.1 vs. uniprot
Match: A0A6H5K3C5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C5_9PHAE) HSP 1 Score: 127 bits (320), Expect = 6.620e-31 Identity = 66/163 (40.49%), Postives = 98/163 (60.12%), Query Frame = 1
Query: 55 PKDKLVIGTKMSYKQKNGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSTASIWMLLAMAATKDGELRHFDAEQAFLKADTDEEI*IEIPEEFQEFPAAVGRLNNAIYGLVQVGRCWNNKFCDDMTATGFEQAKVDPCVFRKVIDGEAEMVVVVHVDDIL 543
P+ + IG+K + K + G I +K R+VA+GF Q+ G+ + S PS ASI ++A+A K +L H+D +QA++ A EEI + PE V ++ A+YGL Q GR W + D + G+EQ +VDPCVFRKV+DGE ++V++VDDIL
Sbjct: 497 PEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHRSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIL 659
BLAST of mRNA_F-distichus_contig100608.54.1 vs. uniprot
Match: A0A6H5KY81_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY81_9PHAE) HSP 1 Score: 125 bits (314), Expect = 7.760e-31 Identity = 64/163 (39.26%), Postives = 98/163 (60.12%), Query Frame = 1
Query: 55 PKDKLVIGTKMSYKQKNGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSTASIWMLLAMAATKDGELRHFDAEQAFLKADTDEEI*IEIPEEFQEFPAAVGRLNNAIYGLVQVGRCWNNKFCDDMTATGFEQAKVDPCVFRKVIDGEAEMVVVVHVDDIL 543
P+ + IG++ + K + G I +K R+VA+GF Q+ G+ + S P ASI ++A+A K +L H+D +QA++ A +EEI + PE V ++ A+YGL Q GR W + D + G+EQ +VDPCVFRKV+DGE ++V++VDDIL
Sbjct: 141 PEGRKAIGSEWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPPAASIKTMIAVATEKGKKLDHWDVKQAYIHATLNEEIYLRFPEGHGSMSGKVVKVERALYGLKQSGREWGVEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIL 303 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig100608.54.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig100608.54.1 >prot_F-distichus_contig100608.54.1 ID=prot_F-distichus_contig100608.54.1|Name=mRNA_F-distichus_contig100608.54.1|organism=Fucus distichus monoicous|type=polypeptide|length=104bp MLGMVENCVYKQVARPKDKLVIGTKMSYKQKNGQDGKIEKYKCRLVAQGFback to top mRNA from alignment at F-distichus_contig100608:1485..2027+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig100608.54.1 ID=mRNA_F-distichus_contig100608.54.1|Name=mRNA_F-distichus_contig100608.54.1|organism=Fucus distichus monoicous|type=mRNA|length=543bp|location=Sequence derived from alignment at F-distichus_contig100608:1485..2027+ (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig100608:1485..2027+ >mRNA_F-distichus_contig100608.54.1 ID=mRNA_F-distichus_contig100608.54.1|Name=mRNA_F-distichus_contig100608.54.1|organism=Fucus distichus monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at F-distichus_contig100608:1485..2027+ (Fucus distichus monoicous)back to top |