mRNA_F-distichus_contig1003.31.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-distichus_contig1003.31.1
Unique Name	mRNA_F-distichus_contig1003.31.1
Type	mRNA
Organism	Fucus distichus monoicous (Fucus distichus monoicous)

Homology

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BLAST of mRNA_F-distichus_contig1003.31.1 vs. uniprot
Match: A0A482UT74_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UT74_9ARCH)

HSP 1 Score: 60.1 bits (144), Expect = 1.420e-10
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 1

Query:    1 RLAPSQTGDLLHTYRGHSTEIVCLSFDPHGTKIATGSM 114
            +L  +++G LL+TYRGH+TEIVCLSF+PHGT IATG +
Sbjct:   37 KLWNAESGQLLYTYRGHATEIVCLSFNPHGTSIATGMV 74

[Close]

BLAST of mRNA_F-distichus_contig1003.31.1 vs. uniprot
Match: V9L7Y8_CALMI (Outer row dynein assembly protein 16-like protein (Fragment) n=1 Tax=Callorhinchus milii TaxID=7868 RepID=V9L7Y8_CALMI)

HSP 1 Score: 60.8 bits (146), Expect = 8.030e-10
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1

Query:    1 RLAPSQTGDLLHTYRGHSTEIVCLSFDPHGTKIATGSMDNTA 126
            +L  S+TG   HT+RGH+ EIVCLSF+P  T +ATGSMD TA
Sbjct:    4 KLWSSETGKCFHTFRGHTAEIVCLSFNPQSTLVATGSMDTTA 45

[Close]

BLAST of mRNA_F-distichus_contig1003.31.1 vs. uniprot
Match: A0A7K9KUM1_9PASS (DAW1 factor (Fragment) n=2 Tax=Passeriformes TaxID=9126 RepID=A0A7K9KUM1_9PASS)

HSP 1 Score: 59.3 bits (142), Expect = 1.410e-9
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 1

Query:   19 TGDLLHTYRGHSTEIVCLSFDPHGTKIATGSMDNTAR 129
            TG   HT+RGHS EIVCLSF+P  T +ATGSMD TA+
Sbjct:    1 TGQCYHTFRGHSAEIVCLSFNPQSTLLATGSMDTTAK 37

[Close]

BLAST of mRNA_F-distichus_contig1003.31.1 vs. uniprot
Match: A0A7L2DBA5_CATFU (DAW1 factor (Fragment) n=6 Tax=Passeriformes TaxID=9126 RepID=A0A7L2DBA5_CATFU)

HSP 1 Score: 59.3 bits (142), Expect = 1.410e-9
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 1

Query:   19 TGDLLHTYRGHSTEIVCLSFDPHGTKIATGSMDNTAR 129
            TG   HT+RGHS EIVCLSF+P  T +ATGSMD TA+
Sbjct:    1 TGQCYHTFRGHSAEIVCLSFNPQSTLLATGSMDTTAK 37

[Close]

BLAST of mRNA_F-distichus_contig1003.31.1 vs. uniprot
Match: A0A7K7GV26_ERIRU (DAW1 factor (Fragment) n=1 Tax=Erithacus rubecula TaxID=37610 RepID=A0A7K7GV26_ERIRU)

HSP 1 Score: 59.3 bits (142), Expect = 1.450e-9
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 1

Query:   19 TGDLLHTYRGHSTEIVCLSFDPHGTKIATGSMDNTAR 129
            TG   HT+RGHS EIVCLSF+P  T +ATGSMD TA+
Sbjct:    1 TGQCYHTFRGHSAEIVCLSFNPQSTLLATGSMDTTAK 37

[Close]

BLAST of mRNA_F-distichus_contig1003.31.1 vs. uniprot
Match: A0A7K8EIY9_LEURO (DAW1 factor (Fragment) n=5 Tax=Passeriformes TaxID=9126 RepID=A0A7K8EIY9_LEURO)

HSP 1 Score: 59.3 bits (142), Expect = 1.470e-9
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 1

Query:   19 TGDLLHTYRGHSTEIVCLSFDPHGTKIATGSMDNTAR 129
            TG   HT+RGHS EIVCLSF+P  T +ATGSMD TA+
Sbjct:    1 TGQCYHTFRGHSAEIVCLSFNPQSTLLATGSMDTTAK 37

[Close]

BLAST of mRNA_F-distichus_contig1003.31.1 vs. uniprot
Match: A0A7K4XSR9_REGSA (DAW1 factor (Fragment) n=2 Tax=Passeriformes TaxID=9126 RepID=A0A7K4XSR9_REGSA)

HSP 1 Score: 58.9 bits (141), Expect = 1.840e-9
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 1

Query:   19 TGDLLHTYRGHSTEIVCLSFDPHGTKIATGSMDNTAR 129
            TG   HT+RGHS EIVCLSF+P  T +ATGSMD TA+
Sbjct:    1 TGKCCHTFRGHSAEIVCLSFNPQSTLLATGSMDTTAK 37

[Close]

BLAST of mRNA_F-distichus_contig1003.31.1 vs. uniprot
Match: A0A7K7XTP1_9PASS (DAW1 factor (Fragment) n=2 Tax=Passeriformes TaxID=9126 RepID=A0A7K7XTP1_9PASS)

HSP 1 Score: 58.9 bits (141), Expect = 1.860e-9
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 1

Query:   19 TGDLLHTYRGHSTEIVCLSFDPHGTKIATGSMDNTAR 129
            TG   HT+RGHS EIVCLSF+P  T +ATGSMD TA+
Sbjct:    1 TGKCYHTFRGHSAEIVCLSFNPQSTLLATGSMDTTAK 37

[Close]

BLAST of mRNA_F-distichus_contig1003.31.1 vs. uniprot
Match: A0A7K4V384_9EMBE (DAW1 factor (Fragment) n=1 Tax=Emberiza fucata TaxID=337179 RepID=A0A7K4V384_9EMBE)

HSP 1 Score: 58.9 bits (141), Expect = 1.950e-9
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 1

Query:   19 TGDLLHTYRGHSTEIVCLSFDPHGTKIATGSMDNTAR 129
            TG   HT+RGHS EIVCLSF+P  T +ATGSMD TA+
Sbjct:    1 TGKCYHTFRGHSAEIVCLSFNPQSTLLATGSMDTTAK 37

[Close]

BLAST of mRNA_F-distichus_contig1003.31.1 vs. uniprot
Match: A0A852I199_9PASS (DAW1 factor (Fragment) n=7 Tax=Passeriformes TaxID=9126 RepID=A0A852I199_9PASS)

HSP 1 Score: 58.9 bits (141), Expect = 1.970e-9
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 1

Query:   19 TGDLLHTYRGHSTEIVCLSFDPHGTKIATGSMDNTAR 129
            TG   HT+RGHS EIVCLSF+P  T +ATGSMD TA+
Sbjct:    1 TGKCYHTFRGHSAEIVCLSFNPQSTLLATGSMDTTAK 37

The following BLAST results are available for this feature:

BLAST of mRNA_F-distichus_contig1003.31.1 vs. uniprot

BLAST of mRNA_F-distichus_contig1003.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A482UT74_9ARCH	1.420e-10	65.79	Uncharacterized protein n=1 Tax=archaeon TaxID=190...	[more]
V9L7Y8_CALMI	8.030e-10	61.90	Outer row dynein assembly protein 16-like protein ...	[more]
A0A7K9KUM1_9PASS	1.410e-9	67.57	DAW1 factor (Fragment) n=2 Tax=Passeriformes TaxID...	[more]
A0A7L2DBA5_CATFU	1.410e-9	67.57	DAW1 factor (Fragment) n=6 Tax=Passeriformes TaxID...	[more]
A0A7K7GV26_ERIRU	1.450e-9	67.57	DAW1 factor (Fragment) n=1 Tax=Erithacus rubecula ...	[more]
A0A7K8EIY9_LEURO	1.470e-9	67.57	DAW1 factor (Fragment) n=5 Tax=Passeriformes TaxID...	[more]
A0A7K4XSR9_REGSA	1.840e-9	67.57	DAW1 factor (Fragment) n=2 Tax=Passeriformes TaxID...	[more]
A0A7K7XTP1_9PASS	1.860e-9	67.57	DAW1 factor (Fragment) n=2 Tax=Passeriformes TaxID...	[more]
A0A7K4V384_9EMBE	1.950e-9	67.57	DAW1 factor (Fragment) n=1 Tax=Emberiza fucata Tax...	[more]
A0A852I199_9PASS	1.970e-9	67.57	DAW1 factor (Fragment) n=7 Tax=Passeriformes TaxID...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-distichus_contig1003	contig	F-distichus_contig1003:15810..15941 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19

Properties


Property Name	Value
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Model size	132
Cds size	132
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928923.2940726-CDS-F-distichus_contig1003:15809..15941	1622928923.2940726-CDS-F-distichus_contig1003:15809..15941	Fucus distichus monoicous	CDS	F-distichus_contig1003 15810..15941 +
1690885062.0972693-CDS-F-distichus_contig1003:15809..15941	1690885062.0972693-CDS-F-distichus_contig1003:15809..15941	Fucus distichus monoicous	CDS	F-distichus_contig1003 15810..15941 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-distichus_contig1003.31.1	prot_F-distichus_contig1003.31.1	Fucus distichus monoicous	polypeptide	F-distichus_contig1003 15810..15941 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-distichus_contig1003:15810..15941+
coding sequence from alignment at F-distichus_contig1003:15810..15941+

protein sequence of mRNA_F-distichus_contig1003.31.1

>prot_F-distichus_contig1003.31.1 ID=prot_F-distichus_contig1003.31.1|Name=mRNA_F-distichus_contig1003.31.1|organism=Fucus distichus monoicous|type=polypeptide|length=44bp
RLAPSQTGDLLHTYRGHSTEIVCLSFDPHGTKIATGSMDNTAR*

mRNA from alignment at F-distichus_contig1003:15810..15941+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-distichus_contig1003.31.1 ID=mRNA_F-distichus_contig1003.31.1|Name=mRNA_F-distichus_contig1003.31.1|organism=Fucus distichus monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at F-distichus_contig1003:15810..15941+ (Fucus distichus monoicous)
CGACTCGCGCCAAGCCAGACGGGGGACTTGCTCCACACGTACCGAGGACA
CTCCACGGAGATCGTGTGTCTGTCGTTCGATCCTCACGGGACCAAGATCG
CCACTGGATCGATGGACAACACGGCACGGTGA

Coding sequence (CDS) from alignment at F-distichus_contig1003:15810..15941+

>mRNA_F-distichus_contig1003.31.1 ID=mRNA_F-distichus_contig1003.31.1|Name=mRNA_F-distichus_contig1003.31.1|organism=Fucus distichus monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at F-distichus_contig1003:15810..15941+ (Fucus distichus monoicous)
CGACTCGCGCCAAGCCAGACGGGGGACTTGCTCCACACGTACCGAGGACA
CTCCACGGAGATCGTGTGTCTGTCGTTCGATCCTCACGGGACCAAGATCG
CCACTGGATCGATGGACAACACGGCACGGTGACGACTCGCGCCAAGCCAG
ACGGGGGACTTGCTCCACACGTACCGAGGACACTCCACGGAGATCGTGTG
TCTGTCGTTCGATCCTCACGGGACCAAGATCGCCACTGGATCGATGGACA
ACACGGCACGGTGA