EsuBft1350_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1350_5a-0001
Unique NameEsuBft1350_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_30contigScaffold_30:409353..410892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog35128.Thaps11039
ProteomeIdEsuBft1350_5
Protein domainsG3DSA
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2836|Bacillariophyta
Length143
Hectar predicted targeting categoryother localisation
Evalue7.08e-11
EggNOG OGsKOG2723@1|root,KOG2723@2759|Eukaryota,2XF76@2836|Bacillariophyta
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_005080.1
Date last modified2016-06-14
Date creation2016-06-14
DescriptionSterile alpha motif.
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1350_5aEsuBft1350_5aEctocarpus subulatus male Bft15bgeneScaffold_30 409353..410892 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1350_5a-0001-exonagat-exon-42512Ectocarpus subulatus male Bft15bexonScaffold_30 409353..409732 -
EsuBft1350_5a-0001-exonagat-exon-42513Ectocarpus subulatus male Bft15bexonScaffold_30 409780..410328 -
EsuBft1350_5a-0001-exonEsuBft1350_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_30 410391..410892 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1350_5a-0001-cdsEsuBft1350_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_30 409353..409732 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1350_5a-0001EsuBft1350_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_30 409353..410892 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1350_5a-0001 ID=EsuBft1350_5a-0001|Name=EsuBft1350_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1431bp|location=Sequence derived from alignment at Scaffold_30:409353..410892- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAATCCCTTGCAAAAGCATGACATGTTCTCAGCAACAAGGCGTGC
CCATCTTGAAGAACTGGAGAGGAGAGAGAGCCATGAGGAATGGGAGGGAT
TCGTGAAGGGTTGGCACAAGCTCGAACAGCTGGAAACCGAGTGGGGAAGG
GTGCGTTCAACCTTCGTGGACGACACGCTGACCTTGAACGTGGGTGGTTC
GAACGTCGATGTCAGTCGGGCGGATCTACACAGACTGCCGGCACTGTCTG
AGGTGTGGAAGCTGGCCAATCTGTTTGACAGCGACTGGGACGAGCGGCTT
CCTCGAGATGCGAATGGTCTCATGGTGCTCGACGAGTCCCCCGTGTGCTT
CAAGCACCTCGTCGACGCACTGGGGGGTGCCCTGCCTACTGACGAGCAGG
CCTACCTCCCCTACGTCTCCAATGCTCTGGGGGTACCTAGTCCTACTCGA
GTGCCGAGACGGCGAGTGGACAGCGAGGGAAGCGTGATGCTGGGCGTGGG
GGACCTGCTGTACCGTGCATCCCGCGATGGCTGGGATACCAAGCATTTCC
ACACCCGGTGCGGAGATGACAGCCCGATGACTGTCACGCTGTACCGGTTA
AATGACGCCAGCAATCGTAAGGGTTTGGGCTGCAGTGTGCTTGGGTGCTT
CTCAAGTGTCCCCGGGACTCCCCCTCGTGACGGATCTACGGAGCGCAAAT
CCTCGCCCGGGGGATTTGTGTTCATCCTTACTGATGGCTCGCGCTCTTTC
GGTCCGACAAAGTTGGAACTAGACCCGCGCAATGCTAGGAGAGGATGTGG
TGTGGTGGTTCTTGGTGAAGACCGCATGCCGTCCTTCCATGATGACTTGG
GGATATTGCACGAAGAAGAACGCCATCGAAGTCGTACTTCCAGCACAAAC
GCCAAGTATCGCCTTTGGACTGACAGCGACGCGTTCTACGTGCCCGAGGG
ATGCTCATTCCTCGAATACGATGGGATCGATATGGCGGAAACTAAGGGTT
ATCGCGTGTGGTCGGCGGAGGTGGAGCGTGGCGACGACGTTCATCGGTTC
GCTCAAAGCAAGCTTGTTGAGGCCACTGAGAAGGGTGAAGCATCCGCAAG
CGCCTTGGGCGCCGTGTACGGGCCAGGTGTGGCATTGAACAACAGAGATC
CTGTGGTGGACTTCAGTGTGTGTGGGTCGAGGACAACCACCAGGATCACC
ACCCTGCACTCTACCCTGCAGCTCTGCCCATACCTTGTCGCTCGACTGGA
CCAGTCGAAATGGACCGAGAACAAGGATAAGCACGGGCGGTGGTTAATCA
AAGATTGCAGCCCAGCTGTATTCTCCAAGGTGCTCGACGTACTGCGAATG
AAGAAACGTGCAGAGTGGATTGGCGGGGAAGCTAAGGCACGCGTTGCCGT
CCAGGCCACCGATCGCGAGGCGATCGAGTAG
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protein sequence of EsuBft1350_5a-0001

>EsuBft1350_5 ID=EsuBft1350_5|Name=EsuBft1350_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=476bp
MPNPLQKHDMFSATRRAHLEELERRESHEEWEGFVKGWHKLEQLETEWGR
VRSTFVDDTLTLNVGGSNVDVSRADLHRLPALSEVWKLANLFDSDWDERL
PRDANGLMVLDESPVCFKHLVDALGGALPTDEQAYLPYVSNALGVPSPTR
VPRRRVDSEGSVMLGVGDLLYRASRDGWDTKHFHTRCGDDSPMTVTLYRL
NDASNRKGLGCSVLGCFSSVPGTPPRDGSTERKSSPGGFVFILTDGSRSF
GPTKLELDPRNARRGCGVVVLGEDRMPSFHDDLGILHEEERHRSRTSSTN
AKYRLWTDSDAFYVPEGCSFLEYDGIDMAETKGYRVWSAEVERGDDVHRF
AQSKLVEATEKGEASASALGAVYGPGVALNNRDPVVDFSVCGSRTTTRIT
TLHSTLQLCPYLVARLDQSKWTENKDKHGRWLIKDCSPAVFSKVLDVLRM
KKRAEWIGGEAKARVAVQATDREAIE
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mRNA from alignment at Scaffold_30:409353..410892-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1350_5a-0001 ID=EsuBft1350_5a-0001|Name=EsuBft1350_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1540bp|location=Sequence derived from alignment at Scaffold_30:409353..410892- (Ectocarpus subulatus male Bft15b)
ATGCCCAATCCCTTGCAAAAGCATGACATGTTCTCAGCAACAAGGCGTGC
CCATCTTGAAGAACTGGAGAGGAGAGAGAGCCATGAGGAATGGGAGGGAT
TCGTGAAGGGTTGGCACAAGCTCGAACAGCTGGAAACCGAGTGGGGAAGG
GTGCGTTCAACCTTCGTGGACGACACGCTGACCTTGAACGTGGGTGGTTC
GAACGTCGATGTCAGTCGGGCGGATCTACACAGACTGCCGGCACTGTCTG
AGGTGTGGAAGCTGGCCAATCTGTTTGACAGCGACTGGGACGAGCGGCTT
CCTCGAGATGCGAATGGTCTCATGGTGCTCGACGAGTCCCCCGTGTGCTT
CAAGCACCTCGTCGACGCACTGGGGGGTGCCCTGCCTACTGACGAGCAGG
CCTACCTCCCCTACGTCTCCAATGCTCTGGGGGTACCTAGTCCTACTCGA
GTGCCGAGACGGCGAGTGGACAGCGAGGGAAGCGTGATGCTGGGCGTGGG
GGGTGAGCTAGACCGAATGGCGCGGTTTTGGACTGGTGGTGCCCTGGCAA
CCCGGAAAGGCTAGACCTGCTGTACCGTGCATCCCGCGATGGCTGGGATA
CCAAGCATTTCCACACCCGGTGCGGAGATGACAGCCCGATGACTGTCACG
CTGTACCGGTTAAATGACGCCAGCAATCGTAAGGGTTTGGGCTGCAGTGT
GCTTGGGTGCTTCTCAAGTGTCCCCGGGACTCCCCCTCGTGACGGATCTA
CGGAGCGCAAATCCTCGCCCGGGGGATTTGTGTTCATCCTTACTGATGGC
TCGCGCTCTTTCGGTCCGACAAAGTTGGAACTAGACCCGCGCAATGCTAG
GAGAGGATGTGGTGTGGTGGTTCTTGGTGAAGACCGCATGCCGTCCTTCC
ATGATGACTTGGGGATATTGCACGAAGAAGAACGCCATCGAAGTCGTACT
TCCAGCACAAACGCCAAGTATCGCCTTTGGACTGACAGCGACGCGTTCTA
CGTGCCCGAGGGATGCTCATTCCTCGAATACGATGGGATCGATATGGCGG
AAACTAAGGGTTATCGCGTGTGGTCGGCGGAGGTGGAGCGTGGCGACGAC
GTTCATCGGTTCGGTGGCTCAATTGCCGCGTCGTTCGAAGAGGAGCATAA
AGCGCTGCAGCTCAAAGCAAGCTTGTTGAGGCCACTGAGAAGGGTGAAGC
ATCCGCAAGCGCCTTGGGCGCCGTGTACGGGCCAGGTGTGGCATTGAACA
ACAGAGATCCTGTGGTGGACTTCAGTGTGTGTGGGTCGAGGACAACCACC
AGGATCACCACCCTGCACTCTACCCTGCAGCTCTGCCCATACCTTGTCGC
TCGACTGGACCAGTCGAAATGGACCGAGAACAAGGATAAGCACGGGCGGT
GGTTAATCAAAGATTGCAGCCCAGCTGTATTCTCCAAGGTGCTCGACGTA
CTGCGAATGAAGAAACGTGCAGAGTGGATTGGCGGGGAAGCTAAGGCACG
CGTTGCCGTCCAGGCCACCGATCGCGAGGCGATCGAGTAG
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Coding sequence (CDS) from alignment at Scaffold_30:409353..410892-

>EsuBft1350_5a-0001 ID=EsuBft1350_5a-0001|Name=EsuBft1350_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1431bp|location=Sequence derived from alignment at Scaffold_30:409353..410892- (Ectocarpus subulatus male Bft15b)
ATGCCCAATCCCTTGCAAAAGCATGACATGTTCTCAGCAACAAGGCGTGC
CCATCTTGAAGAACTGGAGAGGAGAGAGAGCCATGAGGAATGGGAGGGAT
TCGTGAAGGGTTGGCACAAGCTCGAACAGCTGGAAACCGAGTGGGGAAGG
GTGCGTTCAACCTTCGTGGACGACACGCTGACCTTGAACGTGGGTGGTTC
GAACGTCGATGTCAGTCGGGCGGATCTACACAGACTGCCGGCACTGTCTG
AGGTGTGGAAGCTGGCCAATCTGTTTGACAGCGACTGGGACGAGCGGCTT
CCTCGAGATGCGAATGGTCTCATGGTGCTCGACGAGTCCCCCGTGTGCTT
CAAGCACCTCGTCGACGCACTGGGGGGTGCCCTGCCTACTGACGAGCAGG
CCTACCTCCCCTACGTCTCCAATGCTCTGGGGGTACCTAGTCCTACTCGA
GTGCCGAGACGGCGAGTGGACAGCGAGGGAAGCGTGATGCTGGGCGTGGG
GGACCTGCTGTACCGTGCATCCCGCGATGGCTGGGATACCAAGCATTTCC
ACACCCGGTGCGGAGATGACAGCCCGATGACTGTCACGCTGTACCGGTTA
AATGACGCCAGCAATCGTAAGGGTTTGGGCTGCAGTGTGCTTGGGTGCTT
CTCAAGTGTCCCCGGGACTCCCCCTCGTGACGGATCTACGGAGCGCAAAT
CCTCGCCCGGGGGATTTGTGTTCATCCTTACTGATGGCTCGCGCTCTTTC
GGTCCGACAAAGTTGGAACTAGACCCGCGCAATGCTAGGAGAGGATGTGG
TGTGGTGGTTCTTGGTGAAGACCGCATGCCGTCCTTCCATGATGACTTGG
GGATATTGCACGAAGAAGAACGCCATCGAAGTCGTACTTCCAGCACAAAC
GCCAAGTATCGCCTTTGGACTGACAGCGACGCGTTCTACGTGCCCGAGGG
ATGCTCATTCCTCGAATACGATGGGATCGATATGGCGGAAACTAAGGGTT
ATCGCGTGTGGTCGGCGGAGGTGGAGCGTGGCGACGACGTTCATCGGTTC
GCTCAAAGCAAGCTTGTTGAGGCCACTGAGAAGGGTGAAGCATCCGCAAG
CGCCTTGGGCGCCGTGTACGGGCCAGGTGTGGCATTGAACAACAGAGATC
CTGTGGTGGACTTCAGTGTGTGTGGGTCGAGGACAACCACCAGGATCACC
ACCCTGCACTCTACCCTGCAGCTCTGCCCATACCTTGTCGCTCGACTGGA
CCAGTCGAAATGGACCGAGAACAAGGATAAGCACGGGCGGTGGTTAATCA
AAGATTGCAGCCCAGCTGTATTCTCCAAGGTGCTCGACGTACTGCGAATG
AAGAAACGTGCAGAGTGGATTGGCGGGGAAGCTAAGGCACGCGTTGCCGT
CCAGGCCACCGATCGCGAGGCGATCGAGTAG
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