|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 7425.NV18849-PA |
| ProteomeId | EsuBft499_14 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | copia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation] |
| Nb exon | 4 |
| Max annot lvl | 33208|Metazoa |
| Length | 828 |
| Evalue | 2.97e-17 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,41ZUZ@6656|Arthropoda,3SKEY@50557|Insecta |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
| COG category | L |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft499_14a-0001 ID=EsuBft499_14a-0001|Name=EsuBft499_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=828bp|location=Sequence derived from alignment at Scaffold_30:208439..209627- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGAGGAGATGTACAGGCGCAAGACGCAGGAGGTGTTGGACCCGCAACA
GCAGGCGTTCGGGGCCGAGGTCGACGCCAGCGGGTTTTCGCAACCACTCC
CAGACCCACAGCTAAGACCGACGAGAGATGACGAGCCCGCGGTGGATAAG
CCTGTGAGGGAGGCGATCGGATGCCTGATGTGGACGAAGCTGACGAGGCC
AGCGATCGCCCTGCCTCTGAACAAGCTCCAGAAGATCGCTCACACACCCA
CCGGGAGGATATGGAACGCGCTTGTGCGGAACATGTCCTACCTGAAGTTC
ACGAAGGACTTCGGCATCACCTACCTACGGGGGTCAGGACTAGACCTAAG
CGTCGTGTTTGTCGATGCCAGCTACGCTGACAACGAAGTAGACAGGCGTT
CTACGACCGGGCTAGCTGTGACGGAGGCGTTGTTTGTGCGTGGCGTTCTG
TCTTTCATAGCGCCCGAGACGAGTGGGACGAAGATCAAGGTCCTTGAGGA
CAACAAGGGGGCTCTCGCCTTAATCGAGANATTTGTGCGTGGCGTTCTGT
CGTTCATAGCGCCCAAGACAAGTGGGGCGAAGATCAAGGTCCTAGAGGGC
AACAAGGGGGCTCTCGCCATAATCGAGAACCCGTTCAGCTCAGCGAGGAG
CAAGCACATCGACGTGCGGTTCCATTTCATTCGCGAGCTATTCAAGTCGG
GCAAGATCTGCAGAATACGTTCCGACTGGAGAGCAGCACGCCAACATGCT
GACCAAGGAAGCGTTGTGCCGGCGCGTCACCCGCGGCTGGAGCCTAGAAA
CGCCGAGAGCGTTGCTTCGGGTGTGTAA back to topprotein sequence of EsuBft499_14a-0001 >EsuBft499_14 ID=EsuBft499_14|Name=EsuBft499_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=275bp
MEEMYRRKTQEVLDPQQQAFGAEVDASGFSQPLPDPQLRPTRDDEPAVDK
PVREAIGCLMWTKLTRPAIALPLNKLQKIAHTPTGRIWNALVRNMSYLKF
TKDFGITYLRGSGLDLSVVFVDASYADNEVDRRSTTGLAVTEALFVRGVL
SFIAPETSGTKIKVLEDNKGALALIEXFVRGVLSFIAPKTSGAKIKVLEG
NKGALAIIENPFSSARSKHIDVRFHFIRELFKSGKICRIRSDWRAARQHA
DQGSVVPARHPRLEPRNAESVASGV back to topmRNA from alignment at Scaffold_30:208439..209627- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft499_14a-0001 ID=EsuBft499_14a-0001|Name=EsuBft499_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1189bp|location=Sequence derived from alignment at Scaffold_30:208439..209627- (Ectocarpus subulatus male Bft15b)
ATGGAGGAGATGTACAGGCGCAAGACGCAGGAGGTGTTGGACCCGCAACA
GCAGGCGTTCGGGGCCGAGGTCGACGCCAGCGGGTTTTCGCAACCACTCC
CAGACCCACAGCTAAGACCGACGAGAGATGACGAGCCCGCGGTGGATAAG
CCTGTGAGGGAGGCGATCGGATGCCTGATGTGGACGAAGCTGACGAGGCC
AGCGATCGCCCTGCCTCTGAACAAGCTCCAGAAGATCGCTCACACACCCA
CCGGGAGGATATGGAACGCGCTTGTGCGGAACATGTCCTACCTGAAGTTC
ACGAAGGACTTCGGCATCACCTACCTACGGGGGTCAGGACTAGACCTAAG
CGTGTTTGTCGATGCCAGCTACGCTGACAACGAAGTNCGATCGCCCTGCC
TCTGACAAGCTCCAGAAGATCGCCCACTCACCCACCGGGAGGATATGGAA
CGCGCATACGTACGGTGGTCAGGACTAGACCTAAGCGTGTTTGTCGATGC
CAGCTACGCTGACAACGAAGTAGACAGGCGTTCTACGACCGGGCTAGCTG
TGACGGTAGGTGGTACCGTAGTGTGTGCATCCACCGAGACGCAGCCAGTG
ACGGCTCAGTCAACCTCGCAAGCAGAGTATATGGCAGCCGCGGAGGGCGT
GAAGGAGGCGTTGTTTGTGCGTGGCGTTCTGTCTTTCATAGCGCCCGAGA
CGAGTGGGACGAAGATCAAGGTCCTTGAGGACAACAAGGGGGCTCTCGCC
TTAATCGAGANATTTGTGCGTGGCGTTCTGTCGTTCATAGCGCCCAAGAC
AAGTGGGGCGAAGATCAAGGTCCTAGAGGGCAACAAGGGGGCTCTCGCCA
TAATCGAGAACCCGTTCAGCTCAGCGAGGAGCAAGCACATCGACGTGCGG
TTCCATTTCATTCGCGAGCTATTCAAGTCGGGCAAGATCTGCAGAATACG
TTCCGACTGGAGAGCAGCACGCCAACATGCTGACCAAGGTCCTTGGCAGA
GAAGTTGTACCACCAGAAGGCTCTGATGAACCTACCGATGTAGTAGTGTG
CTCTTGTTCTGTTTGGTTTATTTGGTGGTTTTAGCACTTGGCATATATGA
CCATGGTAGGTCACGCAGGAAGCGTTGTGCCGGCGCGTCACCCGCGGCTG
GAGCCTAGAAACGCCGAGAGCGTTGCTTCGGGTGTGTAA back to topCoding sequence (CDS) from alignment at Scaffold_30:208439..209627- >EsuBft499_14a-0001 ID=EsuBft499_14a-0001|Name=EsuBft499_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=828bp|location=Sequence derived from alignment at Scaffold_30:208439..209627- (Ectocarpus subulatus male Bft15b)
ATGGAGGAGATGTACAGGCGCAAGACGCAGGAGGTGTTGGACCCGCAACA
GCAGGCGTTCGGGGCCGAGGTCGACGCCAGCGGGTTTTCGCAACCACTCC
CAGACCCACAGCTAAGACCGACGAGAGATGACGAGCCCGCGGTGGATAAG
CCTGTGAGGGAGGCGATCGGATGCCTGATGTGGACGAAGCTGACGAGGCC
AGCGATCGCCCTGCCTCTGAACAAGCTCCAGAAGATCGCTCACACACCCA
CCGGGAGGATATGGAACGCGCTTGTGCGGAACATGTCCTACCTGAAGTTC
ACGAAGGACTTCGGCATCACCTACCTACGGGGGTCAGGACTAGACCTAAG
CGTCGTGTTTGTCGATGCCAGCTACGCTGACAACGAAGTAGACAGGCGTT
CTACGACCGGGCTAGCTGTGACGGAGGCGTTGTTTGTGCGTGGCGTTCTG
TCTTTCATAGCGCCCGAGACGAGTGGGACGAAGATCAAGGTCCTTGAGGA
CAACAAGGGGGCTCTCGCCTTAATCGAGANATTTGTGCGTGGCGTTCTGT
CGTTCATAGCGCCCAAGACAAGTGGGGCGAAGATCAAGGTCCTAGAGGGC
AACAAGGGGGCTCTCGCCATAATCGAGAACCCGTTCAGCTCAGCGAGGAG
CAAGCACATCGACGTGCGGTTCCATTTCATTCGCGAGCTATTCAAGTCGG
GCAAGATCTGCAGAATACGTTCCGACTGGAGAGCAGCACGCCAACATGCT
GACCAAGGAAGCGTTGTGCCGGCGCGTCACCCGCGGCTGGAGCCTAGAAA
CGCCGAGAGCGTTGCTTCGGGTGTGTAA back to top
|