EsuBft499_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft499_14a-0001
Unique NameEsuBft499_14a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_30contigScaffold_30:208439..209627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7425.NV18849-PA
ProteomeIdEsuBft499_14
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon4
Max annot lvl33208|Metazoa
Length828
Evalue2.97e-17
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,41ZUZ@6656|Arthropoda,3SKEY@50557|Insecta
Date last modified2016-06-14
Date creation2016-06-14
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft499_14aEsuBft499_14aEctocarpus subulatus male Bft15bgeneScaffold_30 208439..209627 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft499_14a-0001-exonagat-exon-76100Ectocarpus subulatus male Bft15bexonScaffold_30 208439..208509 -
EsuBft499_14a-0001-exonagat-exon-76101Ectocarpus subulatus male Bft15bexonScaffold_30 208640..208973 -
EsuBft499_14a-0001-exonEsuBft499_14a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_30 209073..209142 -
EsuBft499_14a-0001-exonagat-exon-76102Ectocarpus subulatus male Bft15bexonScaffold_30 209275..209627 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft499_14a-0001-cdsEsuBft499_14a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_30 208439..208509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft499_14a-0001EsuBft499_14Ectocarpus subulatus male Bft15bpolypeptideScaffold_30 208439..209627 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft499_14a-0001 ID=EsuBft499_14a-0001|Name=EsuBft499_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=828bp|location=Sequence derived from alignment at Scaffold_30:208439..209627- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGAGATGTACAGGCGCAAGACGCAGGAGGTGTTGGACCCGCAACA
GCAGGCGTTCGGGGCCGAGGTCGACGCCAGCGGGTTTTCGCAACCACTCC
CAGACCCACAGCTAAGACCGACGAGAGATGACGAGCCCGCGGTGGATAAG
CCTGTGAGGGAGGCGATCGGATGCCTGATGTGGACGAAGCTGACGAGGCC
AGCGATCGCCCTGCCTCTGAACAAGCTCCAGAAGATCGCTCACACACCCA
CCGGGAGGATATGGAACGCGCTTGTGCGGAACATGTCCTACCTGAAGTTC
ACGAAGGACTTCGGCATCACCTACCTACGGGGGTCAGGACTAGACCTAAG
CGTCGTGTTTGTCGATGCCAGCTACGCTGACAACGAAGTAGACAGGCGTT
CTACGACCGGGCTAGCTGTGACGGAGGCGTTGTTTGTGCGTGGCGTTCTG
TCTTTCATAGCGCCCGAGACGAGTGGGACGAAGATCAAGGTCCTTGAGGA
CAACAAGGGGGCTCTCGCCTTAATCGAGANATTTGTGCGTGGCGTTCTGT
CGTTCATAGCGCCCAAGACAAGTGGGGCGAAGATCAAGGTCCTAGAGGGC
AACAAGGGGGCTCTCGCCATAATCGAGAACCCGTTCAGCTCAGCGAGGAG
CAAGCACATCGACGTGCGGTTCCATTTCATTCGCGAGCTATTCAAGTCGG
GCAAGATCTGCAGAATACGTTCCGACTGGAGAGCAGCACGCCAACATGCT
GACCAAGGAAGCGTTGTGCCGGCGCGTCACCCGCGGCTGGAGCCTAGAAA
CGCCGAGAGCGTTGCTTCGGGTGTGTAA
back to top

protein sequence of EsuBft499_14a-0001

>EsuBft499_14 ID=EsuBft499_14|Name=EsuBft499_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=275bp
MEEMYRRKTQEVLDPQQQAFGAEVDASGFSQPLPDPQLRPTRDDEPAVDK
PVREAIGCLMWTKLTRPAIALPLNKLQKIAHTPTGRIWNALVRNMSYLKF
TKDFGITYLRGSGLDLSVVFVDASYADNEVDRRSTTGLAVTEALFVRGVL
SFIAPETSGTKIKVLEDNKGALALIEXFVRGVLSFIAPKTSGAKIKVLEG
NKGALAIIENPFSSARSKHIDVRFHFIRELFKSGKICRIRSDWRAARQHA
DQGSVVPARHPRLEPRNAESVASGV
back to top

mRNA from alignment at Scaffold_30:208439..209627-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft499_14a-0001 ID=EsuBft499_14a-0001|Name=EsuBft499_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1189bp|location=Sequence derived from alignment at Scaffold_30:208439..209627- (Ectocarpus subulatus male Bft15b)
ATGGAGGAGATGTACAGGCGCAAGACGCAGGAGGTGTTGGACCCGCAACA
GCAGGCGTTCGGGGCCGAGGTCGACGCCAGCGGGTTTTCGCAACCACTCC
CAGACCCACAGCTAAGACCGACGAGAGATGACGAGCCCGCGGTGGATAAG
CCTGTGAGGGAGGCGATCGGATGCCTGATGTGGACGAAGCTGACGAGGCC
AGCGATCGCCCTGCCTCTGAACAAGCTCCAGAAGATCGCTCACACACCCA
CCGGGAGGATATGGAACGCGCTTGTGCGGAACATGTCCTACCTGAAGTTC
ACGAAGGACTTCGGCATCACCTACCTACGGGGGTCAGGACTAGACCTAAG
CGTGTTTGTCGATGCCAGCTACGCTGACAACGAAGTNCGATCGCCCTGCC
TCTGACAAGCTCCAGAAGATCGCCCACTCACCCACCGGGAGGATATGGAA
CGCGCATACGTACGGTGGTCAGGACTAGACCTAAGCGTGTTTGTCGATGC
CAGCTACGCTGACAACGAAGTAGACAGGCGTTCTACGACCGGGCTAGCTG
TGACGGTAGGTGGTACCGTAGTGTGTGCATCCACCGAGACGCAGCCAGTG
ACGGCTCAGTCAACCTCGCAAGCAGAGTATATGGCAGCCGCGGAGGGCGT
GAAGGAGGCGTTGTTTGTGCGTGGCGTTCTGTCTTTCATAGCGCCCGAGA
CGAGTGGGACGAAGATCAAGGTCCTTGAGGACAACAAGGGGGCTCTCGCC
TTAATCGAGANATTTGTGCGTGGCGTTCTGTCGTTCATAGCGCCCAAGAC
AAGTGGGGCGAAGATCAAGGTCCTAGAGGGCAACAAGGGGGCTCTCGCCA
TAATCGAGAACCCGTTCAGCTCAGCGAGGAGCAAGCACATCGACGTGCGG
TTCCATTTCATTCGCGAGCTATTCAAGTCGGGCAAGATCTGCAGAATACG
TTCCGACTGGAGAGCAGCACGCCAACATGCTGACCAAGGTCCTTGGCAGA
GAAGTTGTACCACCAGAAGGCTCTGATGAACCTACCGATGTAGTAGTGTG
CTCTTGTTCTGTTTGGTTTATTTGGTGGTTTTAGCACTTGGCATATATGA
CCATGGTAGGTCACGCAGGAAGCGTTGTGCCGGCGCGTCACCCGCGGCTG
GAGCCTAGAAACGCCGAGAGCGTTGCTTCGGGTGTGTAA
back to top

Coding sequence (CDS) from alignment at Scaffold_30:208439..209627-

>EsuBft499_14a-0001 ID=EsuBft499_14a-0001|Name=EsuBft499_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=828bp|location=Sequence derived from alignment at Scaffold_30:208439..209627- (Ectocarpus subulatus male Bft15b)
ATGGAGGAGATGTACAGGCGCAAGACGCAGGAGGTGTTGGACCCGCAACA
GCAGGCGTTCGGGGCCGAGGTCGACGCCAGCGGGTTTTCGCAACCACTCC
CAGACCCACAGCTAAGACCGACGAGAGATGACGAGCCCGCGGTGGATAAG
CCTGTGAGGGAGGCGATCGGATGCCTGATGTGGACGAAGCTGACGAGGCC
AGCGATCGCCCTGCCTCTGAACAAGCTCCAGAAGATCGCTCACACACCCA
CCGGGAGGATATGGAACGCGCTTGTGCGGAACATGTCCTACCTGAAGTTC
ACGAAGGACTTCGGCATCACCTACCTACGGGGGTCAGGACTAGACCTAAG
CGTCGTGTTTGTCGATGCCAGCTACGCTGACAACGAAGTAGACAGGCGTT
CTACGACCGGGCTAGCTGTGACGGAGGCGTTGTTTGTGCGTGGCGTTCTG
TCTTTCATAGCGCCCGAGACGAGTGGGACGAAGATCAAGGTCCTTGAGGA
CAACAAGGGGGCTCTCGCCTTAATCGAGANATTTGTGCGTGGCGTTCTGT
CGTTCATAGCGCCCAAGACAAGTGGGGCGAAGATCAAGGTCCTAGAGGGC
AACAAGGGGGCTCTCGCCATAATCGAGAACCCGTTCAGCTCAGCGAGGAG
CAAGCACATCGACGTGCGGTTCCATTTCATTCGCGAGCTATTCAAGTCGG
GCAAGATCTGCAGAATACGTTCCGACTGGAGAGCAGCACGCCAACATGCT
GACCAAGGAAGCGTTGTGCCGGCGCGTCACCCGCGGCTGGAGCCTAGAAA
CGCCGAGAGCGTTGCTTCGGGTGTGTAA
back to top