EsuBft509_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft509_3a-0001
Unique Name	EsuBft509_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_235	contig	Scaffold_235:354353..357301 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft509_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	149
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft509_3a	EsuBft509_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_235 354353..357301 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft509_3a-0001	EsuBft509_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_235 357152..357301 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft509_3a-0001-exon	agat-exon-85985	Ectocarpus subulatus male Bft15b	exon	Scaffold_235 354353..354482 -
EsuBft509_3a-0001-exon	EsuBft509_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_235 354612..354756 -
EsuBft509_3a-0001-exon	agat-exon-85986	Ectocarpus subulatus male Bft15b	exon	Scaffold_235 355936..356001 -
EsuBft509_3a-0001-exon	agat-exon-85984	Ectocarpus subulatus male Bft15b	exon	Scaffold_235 356148..357301 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft509_3a-0001-exon	agat-three_prime_utr-17418	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_235 354353..354482 -
EsuBft509_3a-0001-exon	agat-three_prime_utr-17419	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_235 354612..354756 -
EsuBft509_3a-0001-exon	agat-three_prime_utr-17420	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_235 355936..356001 -
EsuBft509_3a-0001-exon	agat-three_prime_utr-17421	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_235 356148..357151 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft509_3a-0001-cds	EsuBft509_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_235 357152..357301 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_235:354353..357301-
coding sequence from alignment at Scaffold_235:354353..357301-

spliced messenger RNA

>EsuBft509_3a-0001 ID=EsuBft509_3a-0001|Name=EsuBft509_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1495bp|location=Sequence derived from alignment at Scaffold_235:354353..357301- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCTTGGAATCCCAAACAGCAGCAGCTCCAACTTGTCTTCTTTCCG
CAGTTTCTGCTTCCATCCTCCAAGCTTCTTCACCATCCTCATGGATCTCT
ACGGCAACTGGACCGTGGCCACTGTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCCCCGACCACCCACTTCAT
CATCTCCGAAATCCCGCGGTACAGGCTACTTTCCTCCTGGGAGGTCATTT
TCACCACAATAAGTTCAGGGACGACTTGCATAGCCTANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
ATCCATTTTGCATCTCACGCCGGAGAGTTTTGGGGTGTCTTAGCTCCAAG
TCCTCCACCGCCCAATGGGACTTTGGTATTTTTTTAATGCCGTACCAATA
GGCATTAGCCTTAGGTAAGCTTGTGCTTACTTTGGACTGTACCCTCCTCA
TCCTCTGGGGGAGGTAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGGCAAAAACCAATGCATCTGTGAGGTTTCAGTACGCAACTATCCTCAC
TCAACACGTTTATGTGTCGGGCAATCTCCAATGCAAATCACCTGTGAGGT
TCCATATGTGTCTTTCCTCACTCAACGCGTCTCTGTGTCCGGCACTTTCC
AACATCACTCAACTCGTGAGGTTTCAGTATGCAGCTATCCCCACTCAACC
CGTCCATGTGTCTGGCAACCTCAAACCTACTCGACCCTTGGGGTTTCAGT
ATACAGCTTTAATCACTCAACACGTCTATGTGTCCGGTAATCCCCTACAT
CACTCAACCTGTGAGGTTTCCGTAAGCTACCCTCACTCCACGCATCCATG
CGTCACGCGTCTTTGGTAGCATACTATGGGGGCTATATTTGGGGTGGCGT
GTTTTACAGCGCTTTGCCAACAGCGCCAACCCACTTAAGTCTAGA

protein sequence of EsuBft509_3a-0001

>EsuBft509_3 ID=EsuBft509_3|Name=EsuBft509_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MSLGIPNSSSSNLSSFRSFCFHPPSFFTILMDLYGNWTVATVXXXXXXXX

mRNA from alignment at Scaffold_235:354353..357301-

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft509_3a-0001 ID=EsuBft509_3a-0001|Name=EsuBft509_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2949bp|location=Sequence derived from alignment at Scaffold_235:354353..357301- (Ectocarpus subulatus male Bft15b)
ATGTCCCTTGGAATCCCAAACAGCAGCAGCTCCAACTTGTCTTCTTTCCG
CAGTTTCTGCTTCCATCCTCCAAGCTTCTTCACCATCCTCATGGATCTCT
ACGGCAACTGGACCGTGGCCACTGTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCCCCGACCACCCACTTCAT
CATCTCCGAAATCCCGCGGTACAGGCTACTTTCCTCCTGGGAGGTCATTT
TCACCACAATAAGTTCAGGGACGACTTGCATAGCCTANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
ATCCATTTTGCATCTCACGCCGGAGAGTTTTGGGGTGTCTTAGCTCCAAG
TCCTCCACCGCCCAATGGGACTTTGGTATTTTTTTAATGCCGTACCAATA
GGCATTAGCCTTAGGTAAGCTTGTGCTTACTTTGGACTGTACCCTCCTCA
TCCTCTGGGGGAGGTAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGGCAAAAACCAATGCATCTGTGAGGTTTCAGTACGCAACTATCCTCAC
TCAACACGTTTATGTGTCGGGCAATCTCCAATGCAAATCACCTGTGAGGT
TCCAGTATGTGTTTTTCCTCACTCAAAGCGTCTATGTGTCCGGCAATCTC
CAATACAAATCAACCTGTGAGGTTTCAGTATGCAGCTTTCGTCACTCAAC
GCGTCTAGGTGTCCTGCAATCTCCAATGCAAAACACGTGTGAGGTTTCAG
TATGTGTCTTTCCTCACTCAACGCGTCTCTGTGTCCGGCACTTTCCAACA
TCACTCAACTCGTGAGGTTTCAGTATGTAGCTATCCCCATTCAGCGTGTC
TGTGTCTGGCAAACTCAAAAACCAATCCATCTGTGAGGTTTCAGTATGCA
GCTATCCCCACTCAACGCGTCTATGTGTTGGGCAAACTCAAAAACCAATC
CATCCGTGAGGTTTCAGTATGCAGCTATCCTCACTCAACCCGTCTGTGTC
CGGCACTATCCAACATCACTCAACTCGTGAATGTAGCTACCCCCACTCAA
CGCGTCTATGTGTCTGGCAAACTCAAAAACCAATCCATCNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAAACTCAAAAACC
AATCCATCTGTGAGGTTTCAGTATGCAGCTATCCCCACTCAACGCGTCTG
TGTCTGGCAAACTCAAAAACCAATGCATCTCAAACTCAAAGCGTCCATGT
GTCTGGCAAACTCAAAAAACAATCCATCTGTGAGGTTCCAGTATGCAGCT
ATCCCCACTCAACGCGTCTATGTGTCTGGCAAACTCAAAAACCAATCCAT
CTGTGAGGTTTCAGTATGCAGCTATCCTCGCTCAACACGTCTATTTGTCC
GGCAATCTCCATCACAAATCACCTGTGAGGTTCAGTATGTGTCCTCACTC
AACGCGTCTGTGTCTGGCAAACTGAAAAACCATTTCATCTGTGAGGTTTC
AGTATGCAGCTATCCCCACTCAACCCGTCCATGTGTCTGGCAACCTCAAA
CCTACTCGACCCTTGGGGTTTCAGTATACAGCTTTAATCACTCAACACGT
CTATGTGTCCGGTAATCCCCTACATCACTCAACCTGTGAGGTTTCCGTAA
GCTACCCTCACTCCACGCATCCATGCGTCACNACTCGACCCTTGGGGTTT
CAGTATACAGCTTTAATCACTCAACACGTCTATGTGTCCGGTAATCCCCT
ACATCACTCAACCTGTGAGGTTTCCGTAAGCTACCCTCACTCCACGCATC
CATGCGTCACGCGTCTTTGGTAGCATACTATGGGGGCTATATTTGGGGTG
GCGTGTTTTACAGCGCTTTGCCAACAGCGCCAACCCACTTAAGTCTAGA

Coding sequence (CDS) from alignment at Scaffold_235:354353..357301-

>EsuBft509_3a-0001 ID=EsuBft509_3a-0001|Name=EsuBft509_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_235:354353..357301- (Ectocarpus subulatus male Bft15b)
ATGTCCCTTGGAATCCCAAACAGCAGCAGCTCCAACTTGTCTTCTTTCCG
CAGTTTCTGCTTCCATCCTCCAAGCTTCTTCACCATCCTCATGGATCTCT
ACGGCAACTGGACCGTGGCCACTGTNNNNNNNNNNNNNNNNNNNNNNNNN