Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 554065.XP_005846552.1 |
| ProteomeId | EsuBft954_3 |
| Protein domains | IPR029041 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 6 |
| Max annot lvl | 3041|Chlorophyta |
| Length | 142 |
| Hectar predicted targeting category | mitochondrion |
| Evalue | 9.88e-31 |
| EggNOG OGs | 2E0ZU@1|root,2S8CR@2759|Eukaryota,37XFJ@33090|Viridiplantae,34N70@3041|Chlorophyta |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft954_3a-0001 ID=EsuBft954_3a-0001|Name=EsuBft954_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1420bp|location=Sequence derived from alignment at Scaffold_235:236503..239900+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CTACTGCAGAAGACATTTTTTCGCCATGGCCGGTCTCCTGTGCGCCTCTG
CTGGGTCACGTGCTAGATCGCGTACATGTACCCATGCACTTCACTGCGCA
ACGTTCAGGCGCGGATATGCAGCAGCAGCAAGACCAACACCGCCCGTGGC
TGCAGCAAGGGTGGAGTTTGTCGTGACCCTAGAGCGTGCCGTTGTCACCG
ACACCGAGGACGGGACCCTATGGAAGAGCGGAGTGTTCGACGCGGAAATA
CATCCAGACCTACCCCCGGCGGGTACCATGGCTGGGCTTGTCCGCTACTA
CCTTCGAAGAGCGAAGGCGGCAGTGTTCGAGATGAGACCCGATAGGAACA
GCGACAGCAGCAGCAAAGGGGAGAAGTCAACGGGATCGGATACAGACACC
GTCGGTCGAAGCGTTGCGAGGGATGGAATCGAGGGGGGTTATCTCGTCCG
CACCGTCCCGGTGCAACTGTCGCGACAAAAGGCGAGAGACGCAGCATGTG
CTGATGGGGTAGATGCAGAGGGGGCCAAAGTCCCGAACGTGCGGCCTGCC
GATGCGCTGTTGCTGGTTTCTGGAAGCCACCCCGGGCGACGCCTGCCGTT
CGCCAAGAGTTTCCTCATGGACGTCTACGACGAGCTTCGCTTGGCAACAA
GCATGCGAAATAGCGGCCATTTGCCGAAGGGTTTGGCCCTTTGGGCAGTC
GCGAACCCTTTGACGGAGGTGGACGAGGCGGGGATTGACCGCGTTCGGAA
GAAGGTGGAGCTCGGGGCCGAGGTTATTCTCACGCAGCCGCCTCTTGCTT
GGGAACTATTCGAACGGTGGCTTCAAGGCGTTCATACCAGCGGGGCTCTG
GGAGGAAGTGCCGCGGCGAGAAACGACGGATTGGCAAAGCCCGGGGAGGG
GACGGATGCCACGATGAAGATGTTCGAAGCGTCCGGGTCGACGGGCGAAG
AGCGGTCTACGCGCCGCCCGACTGCCGCAGCAGAGGGACAAAGAGGAGGA
GACTCCACAGCGAGGATTCTGGTAGGGTTGCCTGTGATCACCGCACCGAA
GGGGCTCCGCTTCTGGCTCAACCTGTGCGGGTTGCACGACAATCCGGGTG
TCTGCAAGCAGGCCTTCGAGGCCTTCGGACACCCTTCATCGGTGGTGGCG
AGGACGGGGACTGAGGAACCACATGGACATCCCGCCGGGGAAAAGCAAGC
ATCAGCCGTTGCTGGGTCGACTCCGTCCCCGTACGGACAGGAGTGGTTGG
AGACTACGATGTTGAAGCTCAAGAGTCTGGACGGGAGCGGGTTGGGCGTG
GCAGGGGTGCATCTCATGGCGCCTGGCCGAGCGCCCCGGCGGCGGGCGAT
ACAGCTTGCCGCTGCAGGATTTTTCGGGGAACCTCGCTGATGCCGTTGTT
CTATTTGTAACCCGTAATTT back to topprotein sequence of EsuBft954_3a-0001 >EsuBft954_3 ID=EsuBft954_3|Name=EsuBft954_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=454bp
MAGLLCASAGSRARSRTCTHALHCATFRRGYAAAARPTPPVAAARVEFVV
TLERAVVTDTEDGTLWKSGVFDAEIHPDLPPAGTMAGLVRYYLRRAKAAV
FEMRPDRNSDSSSKGEKSTGSDTDTVGRSVARDGIEGGYLVRTVPVQLSR
QKARDAACADGVDAEGAKVPNVRPADALLLVSGSHPGRRLPFAKSFLMDV
YDELRLATSMRNSGHLPKGLALWAVANPLTEVDEAGIDRVRKKVELGAEV
ILTQPPLAWELFERWLQGVHTSGALGGSAAARNDGLAKPGEGTDATMKMF
EASGSTGEERSTRRPTAAAEGQRGGDSTARILVGLPVITAPKGLRFWLNL
CGLHDNPGVCKQAFEAFGHPSSVVARTGTEEPHGHPAGEKQASAVAGSTP
SPYGQEWLETTMLKLKSLDGSGLGVAGVHLMAPGRAPRRRAIQLAAAGFF
GEPR back to topmRNA from alignment at Scaffold_235:236503..239900+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft954_3a-0001 ID=EsuBft954_3a-0001|Name=EsuBft954_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3398bp|location=Sequence derived from alignment at Scaffold_235:236503..239900+ (Ectocarpus subulatus male Bft15b)
CTACTGCAGAAGACATTTTTTCGCCATGGCCGGTCTCCTGTGCGCCTCTG
CTGGGTCACGTGCTAGATCGCGTACATGTACCCATGCACTTCACTGCGCA
ACGTTCAGGCGCGGATATGCAGCAGCAGCAAGACCAACACCGCCCGTGGC
TGCAGCAAGGGTGGAGTTTGTCGTGACCCTAGAGCGTGCCGTTGTCACCG
ACACCGAGGACGGGACCCTATGGAAGAGGTATTGCTTGCAACGCGCTCCT
CCCGCAGAGCTTGACTGAATTGTAACGAGTAGTCTACACTGGTGCGGTTC
AACTCAGCCTGTGCACGTTGGCCAGTGCAATTGGTCTAGACTGATGTTGA
AGTCTTTCAAAAAGGCTGGTACATAGCGCAAGGCTGGATGGTAGGCTATG
TTTCGTGCTCCCGTGTGGCTGTTCTCCTGTCTCCTGGGCGTCGATCTCCG
TCTACATACATGCATTTTCTGCGTCTTGTGCTGCCGCAAACGCAATGAAG
TTCATCATGTCCACTTCACGCCCGCGGTTCGGCGACATTCAGCACAATCC
GTGTGGGCAGTAGTAGTCTACGCAGCAAAATTGATTACGCTAACATATAC
TTGTAGGATAAAGTATTCAATCCGTGCTTTGGGTTGAGGGTTAGGGTTGG
GGATAGGGTCTGCGCGCCCCCTCCCTGTTCTTTTTCTAGATACTTTGAAA
ATCCTGCGTAGGCGGTACTAGTAGTCGACGCAGCAGAATTGATTACGTAA
ACATATGTGGGATAAAGTATTGAGTCCGTGCTTTGGGGTGAGGGTTAGGG
TTCGGGATAGGGTCTGCGTGCCCCCTACCTATTCTTTTTCTACATGCTCT
TAACATCTGCGTAGGCGATCCGTGGGCAGAGAGCATCCATCCAGTGTTGC
CGCCACCGCTTTTTGCCACACTATGCACTGACATTCGTGTTTTCGGTAAT
AATCTTGCAGCGGAGTGTTCGACGCGGAAATACATCCAGACCTACCCCCG
GCGGGTACCATGGCTGGGCTTGTCCGCTACTACCTTCGAAGAGCGAAGGC
GGCAGTGTTCGAGATGAGACCCGATAGGAACAGCGACAGCAGCAGCAAAG
GGGAGAAGTCAACGGGATCGGATACAGACACCGTCGGTCGAAGCGTTGCG
AGGGATGGAATCGAGGGGGGTTATCTCGTCCGCACCGTCCCGGTGCAACT
GTCGCGACAAAAGGCGAGAGACGCAGCATGTGCTGATGGTGATGCGCTCC
GAAGGCAACCTTTAGGCAAATAGTTCACATGCTACAACGGTATGAACGAG
CGCATCTTATGTCGAAGGTGGGACAAGAACAGAGGCTGATACGTCAAAAA
CATACAGCCGACTGGCGCCAGAATGGATGGGAAGATTTTCATAACAGCAA
CATTGGCCACGTCTCGGTACCGGACGCTGGAGGCATGCTGCTTGTTCGCA
CCTTGAACGAGCGTGGAGAGCACACGACCGATGAGCGTGTTTACGTTGAC
CTTTAACAGATACGTACATTTTATGGAATTGTACCTTTTGATCGTCGCAC
TACCGAAAACATCGTATCTGACGCCCCCCCTCCCCGTGGCCGTGACACAC
ACACACATACGTGCTTGCTGCAGGAGCTTCGACGACGCCTCGCTGTAGCG
GCAGGGGTAGATGCAGAGGGGGCCAAAGTCCCGAACGTGCGGCCTGCCGA
TGCGCTGTTGCTGGTGCGTTTGTGGTTGCGTGGGGGTTTGTATTGGTCAT
TACCCGCAAAAGAGGGTCTTGACCTGTGACTCTTTTCGCGAAAGTGTCCC
GTTCTCACGAACTTTCCACCGTTCCAAAAAGCGGGGGACTACGTATTGGG
CGAGAGCTAACGTAGGCTAAACCACAGCCCCCAAGAGACGGGTTTCACCT
ATGGCATCCACATTGGCACACGCCATGACTTTGCCAGACAGTGCTGTCTG
CGGTTTGTTTTCGCCAGAGCTTGTATGTCACTGATCTCGACGTGTTGCGA
TCCGCCATGTGTCATATGTCATGTGCCATGTGTGTCTTGGCAAGGTTTCT
GGAAGCCACCCCGGGCGACGCCTGCCGTTCGCCAAGAGTTTCCTCATGGA
CGTCTACGACGAGCTTCGCTTGGCAACAAGCATGCGAAATAGGTGAGAGC
CTTCTAGGCGGAGCCGACGAGAAGCAGACTGGTCACGAAAGCAATGCGCT
CTAGTGTTTTATTTTTGTTCAAGGCGAATAATCTCGGCGGATCGCTGTTT
GTCAACTCTCAACACGACGGTCACCAAACTCTTTCCTTGGATACAACGGT
GAACCGGTTTTCCATGCTCGTTGTCACATACAGTATAATATTTTTCCGTT
TGGCGGCTGTGTCTTGCAATCGCGCAACCCCTCACTCGCAAGCGGCCATT
TGCCGAAGGGTTTGGCCCTTTGGGCAGTCGCGAACCCTTTGACGGAGGTG
GACGAGGCGGGGATTGACCGCGTTCGGAAGAAGGTGGAGCTCGGGGCCGA
GGTTATTCTCACGCAGCCGCCTCTTGCTTGGGAACTATTCGAACGGTGAG
AGAAGACCTTCGGAGAAATCACTGGCCTTGCGGCCTGTTGTACCACAATA
CGTTGTAGCGCCAAGCCGCCGGACGAGCGCGTGAAGTATCTACCCTAAAT
GTTACCGTGTCTATGCAGCGGTAGGGGCTTGTTCAGCACCCCCCTTTTAT
ACCCGGTTCGTGGTGACCTCCACGCCAATGGAAAACAAACGGGTGGCACT
CGGCTCACGCAAAATAATGGCCGTGGTTGACAACCATTCTCCAGGTGGCT
TCAAGGCGTTCATACCAGCGGGGCTCTGGGAGGAAGTGCCGCGGCGAGAA
ACGACGGATTGGCAAAGCCCGGGGAGGGGACGGATGCCACGATGAAGATG
TTCGAAGCGTCCGGGTCGACGGGCGAAGAGCGGTCTACGCGCCGCCCGAC
TGCCGCAGCAGAGGGACAAAGAGGAGGAGACTCCACAGCGAGGATTCTGG
TAGGGTTGCCTGTGATCACCGCACCGAAGGGGCTCCGCTTCTGGCTCAAC
CTGTGCGGGTTGCACGACAATCCGGGTGTCTGCAAGCAGGCCTTCGAGGC
CTTCGGACACCCTTCATCGGTGGTGGCGAGGACGGGGACTGAGGAACCAC
ATGGACATCCCGCCGGGGAAAAGCAAGCATCAGCCGTTGCTGGGTCGACT
CCGTCCCCGTACGGACAGGAGTGGTTGGAGACTACGATGTTGAAGCTCAA
GAGTCTGGACGGGAGCGGGTTGGGCGTGGCAGGGGTGCATCTCATGGCGC
CTGGCCGAGCGCCCCGGCGGCGGGCGATACAGCTTGCCGCTGCAGGATTT
TTCGGGGAACCTCGCTGATGCCGTTGTTCTATTTGTAACCCGTAATTT back to topCoding sequence (CDS) from alignment at Scaffold_235:236503..239900+ >EsuBft954_3a-0001 ID=EsuBft954_3a-0001|Name=EsuBft954_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1365bp|location=Sequence derived from alignment at Scaffold_235:236503..239900+ (Ectocarpus subulatus male Bft15b)
ATGGCCGGTCTCCTGTGCGCCTCTGCTGGGTCACGTGCTAGATCGCGTAC
ATGTACCCATGCACTTCACTGCGCAACGTTCAGGCGCGGATATGCAGCAG
CAGCAAGACCAACACCGCCCGTGGCTGCAGCAAGGGTGGAGTTTGTCGTG
ACCCTAGAGCGTGCCGTTGTCACCGACACCGAGGACGGGACCCTATGGAA
GAGCGGAGTGTTCGACGCGGAAATACATCCAGACCTACCCCCGGCGGGTA
CCATGGCTGGGCTTGTCCGCTACTACCTTCGAAGAGCGAAGGCGGCAGTG
TTCGAGATGAGACCCGATAGGAACAGCGACAGCAGCAGCAAAGGGGAGAA
GTCAACGGGATCGGATACAGACACCGTCGGTCGAAGCGTTGCGAGGGATG
GAATCGAGGGGGGTTATCTCGTCCGCACCGTCCCGGTGCAACTGTCGCGA
CAAAAGGCGAGAGACGCAGCATGTGCTGATGGGGTAGATGCAGAGGGGGC
CAAAGTCCCGAACGTGCGGCCTGCCGATGCGCTGTTGCTGGTTTCTGGAA
GCCACCCCGGGCGACGCCTGCCGTTCGCCAAGAGTTTCCTCATGGACGTC
TACGACGAGCTTCGCTTGGCAACAAGCATGCGAAATAGCGGCCATTTGCC
GAAGGGTTTGGCCCTTTGGGCAGTCGCGAACCCTTTGACGGAGGTGGACG
AGGCGGGGATTGACCGCGTTCGGAAGAAGGTGGAGCTCGGGGCCGAGGTT
ATTCTCACGCAGCCGCCTCTTGCTTGGGAACTATTCGAACGGTGGCTTCA
AGGCGTTCATACCAGCGGGGCTCTGGGAGGAAGTGCCGCGGCGAGAAACG
ACGGATTGGCAAAGCCCGGGGAGGGGACGGATGCCACGATGAAGATGTTC
GAAGCGTCCGGGTCGACGGGCGAAGAGCGGTCTACGCGCCGCCCGACTGC
CGCAGCAGAGGGACAAAGAGGAGGAGACTCCACAGCGAGGATTCTGGTAG
GGTTGCCTGTGATCACCGCACCGAAGGGGCTCCGCTTCTGGCTCAACCTG
TGCGGGTTGCACGACAATCCGGGTGTCTGCAAGCAGGCCTTCGAGGCCTT
CGGACACCCTTCATCGGTGGTGGCGAGGACGGGGACTGAGGAACCACATG
GACATCCCGCCGGGGAAAAGCAAGCATCAGCCGTTGCTGGGTCGACTCCG
TCCCCGTACGGACAGGAGTGGTTGGAGACTACGATGTTGAAGCTCAAGAG
TCTGGACGGGAGCGGGTTGGGCGTGGCAGGGGTGCATCTCATGGCGCCTG
GCCGAGCGCCCCGGCGGCGGGCGATACAGCTTGCCGCTGCAGGATTTTTC
GGGGAACCTCGCTGA back to top
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