EsuBft954_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft954_3a-0001
Unique NameEsuBft954_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_235contigScaffold_235:236503..239900 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog554065.XP_005846552.1
ProteomeIdEsuBft954_3
Protein domainsIPR029041
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon6
Max annot lvl3041|Chlorophyta
Length142
Hectar predicted targeting categorymitochondrion
Evalue9.88e-31
EggNOG OGs2E0ZU@1|root,2S8CR@2759|Eukaryota,37XFJ@33090|Viridiplantae,34N70@3041|Chlorophyta
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft954_3aEsuBft954_3aEctocarpus subulatus male Bft15bgeneScaffold_235 236503..239900 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft954_3a-0001EsuBft954_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_235 236528..239870 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft954_3a-0001-exonagat-exon-47317Ectocarpus subulatus male Bft15bexonScaffold_235 236503..236730 +
EsuBft954_3a-0001-exonagat-exon-47314Ectocarpus subulatus male Bft15bexonScaffold_235 237463..237740 +
EsuBft954_3a-0001-exonEsuBft954_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_235 238157..238215 +
EsuBft954_3a-0001-exonagat-exon-47315Ectocarpus subulatus male Bft15bexonScaffold_235 238547..238644 +
EsuBft954_3a-0001-exonagat-exon-47316Ectocarpus subulatus male Bft15bexonScaffold_235 238895..239047 +
EsuBft954_3a-0001-exonagat-exon-47313Ectocarpus subulatus male Bft15bexonScaffold_235 239297..239900 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft954_3a-0001-exonagat-five_prime_utr-15261Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_235 236503..236527 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft954_3a-0001-cdsEsuBft954_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_235 236528..236730 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft954_3a-0001-exonagat-three_prime_utr-23445Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_235 239871..239900 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft954_3a-0001 ID=EsuBft954_3a-0001|Name=EsuBft954_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1420bp|location=Sequence derived from alignment at Scaffold_235:236503..239900+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTACTGCAGAAGACATTTTTTCGCCATGGCCGGTCTCCTGTGCGCCTCTG
CTGGGTCACGTGCTAGATCGCGTACATGTACCCATGCACTTCACTGCGCA
ACGTTCAGGCGCGGATATGCAGCAGCAGCAAGACCAACACCGCCCGTGGC
TGCAGCAAGGGTGGAGTTTGTCGTGACCCTAGAGCGTGCCGTTGTCACCG
ACACCGAGGACGGGACCCTATGGAAGAGCGGAGTGTTCGACGCGGAAATA
CATCCAGACCTACCCCCGGCGGGTACCATGGCTGGGCTTGTCCGCTACTA
CCTTCGAAGAGCGAAGGCGGCAGTGTTCGAGATGAGACCCGATAGGAACA
GCGACAGCAGCAGCAAAGGGGAGAAGTCAACGGGATCGGATACAGACACC
GTCGGTCGAAGCGTTGCGAGGGATGGAATCGAGGGGGGTTATCTCGTCCG
CACCGTCCCGGTGCAACTGTCGCGACAAAAGGCGAGAGACGCAGCATGTG
CTGATGGGGTAGATGCAGAGGGGGCCAAAGTCCCGAACGTGCGGCCTGCC
GATGCGCTGTTGCTGGTTTCTGGAAGCCACCCCGGGCGACGCCTGCCGTT
CGCCAAGAGTTTCCTCATGGACGTCTACGACGAGCTTCGCTTGGCAACAA
GCATGCGAAATAGCGGCCATTTGCCGAAGGGTTTGGCCCTTTGGGCAGTC
GCGAACCCTTTGACGGAGGTGGACGAGGCGGGGATTGACCGCGTTCGGAA
GAAGGTGGAGCTCGGGGCCGAGGTTATTCTCACGCAGCCGCCTCTTGCTT
GGGAACTATTCGAACGGTGGCTTCAAGGCGTTCATACCAGCGGGGCTCTG
GGAGGAAGTGCCGCGGCGAGAAACGACGGATTGGCAAAGCCCGGGGAGGG
GACGGATGCCACGATGAAGATGTTCGAAGCGTCCGGGTCGACGGGCGAAG
AGCGGTCTACGCGCCGCCCGACTGCCGCAGCAGAGGGACAAAGAGGAGGA
GACTCCACAGCGAGGATTCTGGTAGGGTTGCCTGTGATCACCGCACCGAA
GGGGCTCCGCTTCTGGCTCAACCTGTGCGGGTTGCACGACAATCCGGGTG
TCTGCAAGCAGGCCTTCGAGGCCTTCGGACACCCTTCATCGGTGGTGGCG
AGGACGGGGACTGAGGAACCACATGGACATCCCGCCGGGGAAAAGCAAGC
ATCAGCCGTTGCTGGGTCGACTCCGTCCCCGTACGGACAGGAGTGGTTGG
AGACTACGATGTTGAAGCTCAAGAGTCTGGACGGGAGCGGGTTGGGCGTG
GCAGGGGTGCATCTCATGGCGCCTGGCCGAGCGCCCCGGCGGCGGGCGAT
ACAGCTTGCCGCTGCAGGATTTTTCGGGGAACCTCGCTGATGCCGTTGTT
CTATTTGTAACCCGTAATTT
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protein sequence of EsuBft954_3a-0001

>EsuBft954_3 ID=EsuBft954_3|Name=EsuBft954_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=454bp
MAGLLCASAGSRARSRTCTHALHCATFRRGYAAAARPTPPVAAARVEFVV
TLERAVVTDTEDGTLWKSGVFDAEIHPDLPPAGTMAGLVRYYLRRAKAAV
FEMRPDRNSDSSSKGEKSTGSDTDTVGRSVARDGIEGGYLVRTVPVQLSR
QKARDAACADGVDAEGAKVPNVRPADALLLVSGSHPGRRLPFAKSFLMDV
YDELRLATSMRNSGHLPKGLALWAVANPLTEVDEAGIDRVRKKVELGAEV
ILTQPPLAWELFERWLQGVHTSGALGGSAAARNDGLAKPGEGTDATMKMF
EASGSTGEERSTRRPTAAAEGQRGGDSTARILVGLPVITAPKGLRFWLNL
CGLHDNPGVCKQAFEAFGHPSSVVARTGTEEPHGHPAGEKQASAVAGSTP
SPYGQEWLETTMLKLKSLDGSGLGVAGVHLMAPGRAPRRRAIQLAAAGFF
GEPR
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mRNA from alignment at Scaffold_235:236503..239900+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft954_3a-0001 ID=EsuBft954_3a-0001|Name=EsuBft954_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3398bp|location=Sequence derived from alignment at Scaffold_235:236503..239900+ (Ectocarpus subulatus male Bft15b)
CTACTGCAGAAGACATTTTTTCGCCATGGCCGGTCTCCTGTGCGCCTCTG
CTGGGTCACGTGCTAGATCGCGTACATGTACCCATGCACTTCACTGCGCA
ACGTTCAGGCGCGGATATGCAGCAGCAGCAAGACCAACACCGCCCGTGGC
TGCAGCAAGGGTGGAGTTTGTCGTGACCCTAGAGCGTGCCGTTGTCACCG
ACACCGAGGACGGGACCCTATGGAAGAGGTATTGCTTGCAACGCGCTCCT
CCCGCAGAGCTTGACTGAATTGTAACGAGTAGTCTACACTGGTGCGGTTC
AACTCAGCCTGTGCACGTTGGCCAGTGCAATTGGTCTAGACTGATGTTGA
AGTCTTTCAAAAAGGCTGGTACATAGCGCAAGGCTGGATGGTAGGCTATG
TTTCGTGCTCCCGTGTGGCTGTTCTCCTGTCTCCTGGGCGTCGATCTCCG
TCTACATACATGCATTTTCTGCGTCTTGTGCTGCCGCAAACGCAATGAAG
TTCATCATGTCCACTTCACGCCCGCGGTTCGGCGACATTCAGCACAATCC
GTGTGGGCAGTAGTAGTCTACGCAGCAAAATTGATTACGCTAACATATAC
TTGTAGGATAAAGTATTCAATCCGTGCTTTGGGTTGAGGGTTAGGGTTGG
GGATAGGGTCTGCGCGCCCCCTCCCTGTTCTTTTTCTAGATACTTTGAAA
ATCCTGCGTAGGCGGTACTAGTAGTCGACGCAGCAGAATTGATTACGTAA
ACATATGTGGGATAAAGTATTGAGTCCGTGCTTTGGGGTGAGGGTTAGGG
TTCGGGATAGGGTCTGCGTGCCCCCTACCTATTCTTTTTCTACATGCTCT
TAACATCTGCGTAGGCGATCCGTGGGCAGAGAGCATCCATCCAGTGTTGC
CGCCACCGCTTTTTGCCACACTATGCACTGACATTCGTGTTTTCGGTAAT
AATCTTGCAGCGGAGTGTTCGACGCGGAAATACATCCAGACCTACCCCCG
GCGGGTACCATGGCTGGGCTTGTCCGCTACTACCTTCGAAGAGCGAAGGC
GGCAGTGTTCGAGATGAGACCCGATAGGAACAGCGACAGCAGCAGCAAAG
GGGAGAAGTCAACGGGATCGGATACAGACACCGTCGGTCGAAGCGTTGCG
AGGGATGGAATCGAGGGGGGTTATCTCGTCCGCACCGTCCCGGTGCAACT
GTCGCGACAAAAGGCGAGAGACGCAGCATGTGCTGATGGTGATGCGCTCC
GAAGGCAACCTTTAGGCAAATAGTTCACATGCTACAACGGTATGAACGAG
CGCATCTTATGTCGAAGGTGGGACAAGAACAGAGGCTGATACGTCAAAAA
CATACAGCCGACTGGCGCCAGAATGGATGGGAAGATTTTCATAACAGCAA
CATTGGCCACGTCTCGGTACCGGACGCTGGAGGCATGCTGCTTGTTCGCA
CCTTGAACGAGCGTGGAGAGCACACGACCGATGAGCGTGTTTACGTTGAC
CTTTAACAGATACGTACATTTTATGGAATTGTACCTTTTGATCGTCGCAC
TACCGAAAACATCGTATCTGACGCCCCCCCTCCCCGTGGCCGTGACACAC
ACACACATACGTGCTTGCTGCAGGAGCTTCGACGACGCCTCGCTGTAGCG
GCAGGGGTAGATGCAGAGGGGGCCAAAGTCCCGAACGTGCGGCCTGCCGA
TGCGCTGTTGCTGGTGCGTTTGTGGTTGCGTGGGGGTTTGTATTGGTCAT
TACCCGCAAAAGAGGGTCTTGACCTGTGACTCTTTTCGCGAAAGTGTCCC
GTTCTCACGAACTTTCCACCGTTCCAAAAAGCGGGGGACTACGTATTGGG
CGAGAGCTAACGTAGGCTAAACCACAGCCCCCAAGAGACGGGTTTCACCT
ATGGCATCCACATTGGCACACGCCATGACTTTGCCAGACAGTGCTGTCTG
CGGTTTGTTTTCGCCAGAGCTTGTATGTCACTGATCTCGACGTGTTGCGA
TCCGCCATGTGTCATATGTCATGTGCCATGTGTGTCTTGGCAAGGTTTCT
GGAAGCCACCCCGGGCGACGCCTGCCGTTCGCCAAGAGTTTCCTCATGGA
CGTCTACGACGAGCTTCGCTTGGCAACAAGCATGCGAAATAGGTGAGAGC
CTTCTAGGCGGAGCCGACGAGAAGCAGACTGGTCACGAAAGCAATGCGCT
CTAGTGTTTTATTTTTGTTCAAGGCGAATAATCTCGGCGGATCGCTGTTT
GTCAACTCTCAACACGACGGTCACCAAACTCTTTCCTTGGATACAACGGT
GAACCGGTTTTCCATGCTCGTTGTCACATACAGTATAATATTTTTCCGTT
TGGCGGCTGTGTCTTGCAATCGCGCAACCCCTCACTCGCAAGCGGCCATT
TGCCGAAGGGTTTGGCCCTTTGGGCAGTCGCGAACCCTTTGACGGAGGTG
GACGAGGCGGGGATTGACCGCGTTCGGAAGAAGGTGGAGCTCGGGGCCGA
GGTTATTCTCACGCAGCCGCCTCTTGCTTGGGAACTATTCGAACGGTGAG
AGAAGACCTTCGGAGAAATCACTGGCCTTGCGGCCTGTTGTACCACAATA
CGTTGTAGCGCCAAGCCGCCGGACGAGCGCGTGAAGTATCTACCCTAAAT
GTTACCGTGTCTATGCAGCGGTAGGGGCTTGTTCAGCACCCCCCTTTTAT
ACCCGGTTCGTGGTGACCTCCACGCCAATGGAAAACAAACGGGTGGCACT
CGGCTCACGCAAAATAATGGCCGTGGTTGACAACCATTCTCCAGGTGGCT
TCAAGGCGTTCATACCAGCGGGGCTCTGGGAGGAAGTGCCGCGGCGAGAA
ACGACGGATTGGCAAAGCCCGGGGAGGGGACGGATGCCACGATGAAGATG
TTCGAAGCGTCCGGGTCGACGGGCGAAGAGCGGTCTACGCGCCGCCCGAC
TGCCGCAGCAGAGGGACAAAGAGGAGGAGACTCCACAGCGAGGATTCTGG
TAGGGTTGCCTGTGATCACCGCACCGAAGGGGCTCCGCTTCTGGCTCAAC
CTGTGCGGGTTGCACGACAATCCGGGTGTCTGCAAGCAGGCCTTCGAGGC
CTTCGGACACCCTTCATCGGTGGTGGCGAGGACGGGGACTGAGGAACCAC
ATGGACATCCCGCCGGGGAAAAGCAAGCATCAGCCGTTGCTGGGTCGACT
CCGTCCCCGTACGGACAGGAGTGGTTGGAGACTACGATGTTGAAGCTCAA
GAGTCTGGACGGGAGCGGGTTGGGCGTGGCAGGGGTGCATCTCATGGCGC
CTGGCCGAGCGCCCCGGCGGCGGGCGATACAGCTTGCCGCTGCAGGATTT
TTCGGGGAACCTCGCTGATGCCGTTGTTCTATTTGTAACCCGTAATTT
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Coding sequence (CDS) from alignment at Scaffold_235:236503..239900+

>EsuBft954_3a-0001 ID=EsuBft954_3a-0001|Name=EsuBft954_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1365bp|location=Sequence derived from alignment at Scaffold_235:236503..239900+ (Ectocarpus subulatus male Bft15b)
ATGGCCGGTCTCCTGTGCGCCTCTGCTGGGTCACGTGCTAGATCGCGTAC
ATGTACCCATGCACTTCACTGCGCAACGTTCAGGCGCGGATATGCAGCAG
CAGCAAGACCAACACCGCCCGTGGCTGCAGCAAGGGTGGAGTTTGTCGTG
ACCCTAGAGCGTGCCGTTGTCACCGACACCGAGGACGGGACCCTATGGAA
GAGCGGAGTGTTCGACGCGGAAATACATCCAGACCTACCCCCGGCGGGTA
CCATGGCTGGGCTTGTCCGCTACTACCTTCGAAGAGCGAAGGCGGCAGTG
TTCGAGATGAGACCCGATAGGAACAGCGACAGCAGCAGCAAAGGGGAGAA
GTCAACGGGATCGGATACAGACACCGTCGGTCGAAGCGTTGCGAGGGATG
GAATCGAGGGGGGTTATCTCGTCCGCACCGTCCCGGTGCAACTGTCGCGA
CAAAAGGCGAGAGACGCAGCATGTGCTGATGGGGTAGATGCAGAGGGGGC
CAAAGTCCCGAACGTGCGGCCTGCCGATGCGCTGTTGCTGGTTTCTGGAA
GCCACCCCGGGCGACGCCTGCCGTTCGCCAAGAGTTTCCTCATGGACGTC
TACGACGAGCTTCGCTTGGCAACAAGCATGCGAAATAGCGGCCATTTGCC
GAAGGGTTTGGCCCTTTGGGCAGTCGCGAACCCTTTGACGGAGGTGGACG
AGGCGGGGATTGACCGCGTTCGGAAGAAGGTGGAGCTCGGGGCCGAGGTT
ATTCTCACGCAGCCGCCTCTTGCTTGGGAACTATTCGAACGGTGGCTTCA
AGGCGTTCATACCAGCGGGGCTCTGGGAGGAAGTGCCGCGGCGAGAAACG
ACGGATTGGCAAAGCCCGGGGAGGGGACGGATGCCACGATGAAGATGTTC
GAAGCGTCCGGGTCGACGGGCGAAGAGCGGTCTACGCGCCGCCCGACTGC
CGCAGCAGAGGGACAAAGAGGAGGAGACTCCACAGCGAGGATTCTGGTAG
GGTTGCCTGTGATCACCGCACCGAAGGGGCTCCGCTTCTGGCTCAACCTG
TGCGGGTTGCACGACAATCCGGGTGTCTGCAAGCAGGCCTTCGAGGCCTT
CGGACACCCTTCATCGGTGGTGGCGAGGACGGGGACTGAGGAACCACATG
GACATCCCGCCGGGGAAAAGCAAGCATCAGCCGTTGCTGGGTCGACTCCG
TCCCCGTACGGACAGGAGTGGTTGGAGACTACGATGTTGAAGCTCAAGAG
TCTGGACGGGAGCGGGTTGGGCGTGGCAGGGGTGCATCTCATGGCGCCTG
GCCGAGCGCCCCGGCGGCGGGCGATACAGCTTGCCGCTGCAGGATTTTTC
GGGGAACCTCGCTGA
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