Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 2880.D7FNR4 |
ProteomeId | EsuBft954_5 |
Protein domains | CYTOPLASMIC_DOMAIN |
Protein domains | TRANSMEMBRANE |
Protein domains | NON_CYTOPLASMIC_DOMAIN |
Protein domains | TMhelix |
Owner | apollo_admin@sb-roscoff.fr |
Nb exon | 1 |
Max annot lvl | 2759|Eukaryota |
Length | 56 |
Hectar predicted targeting category | signal anchor |
Evalue | 3.02e-58 |
EggNOG OGs | 2CZRH@1|root,2SBDH@2759|Eukaryota |
Date last modified | 2016-06-14 |
Date creation | 2016-06-14 |
Description | Common central domain of tyrosinase |
COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft954_5a-0001 ID=EsuBft954_5a-0001|Name=EsuBft954_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=562bp|location=Sequence derived from alignment at Scaffold_235:232332..232893- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TTCACGTGGTTGCGCCCCGGAAGTGGCGAGTGGAGCGAGCACTATGCCCC AAAACAAGAGAAGAAGAGCGGAGGAGATGGACTCGTTGATCCGGGACACG GAAGCGATGAGAGAGCAACGCCTGGGTTCGTGGCCCAGCTTGCGGTGTGG CAAGAGCATGGCGTTCCGCAACGAGCGGCGGCATCTCGTCATGCTATCCG TGCTTGCCGGTGTGGTGTTCTTCGGGTGCGGGTTGCTTGGAGGAACGACG TCGTCGAGATACATCGCGCCGTCATCCCCGAGCAGGGGTTCATTCAGCGC CTCGTCAACGCCGGTGGAGCAATCGGGGTTGGACGGGGGAGCGATGGCAG CTGGGGAGCAGCAGCAAGCCAAGTTGGCGGCGGAGGTGGATAGTAGCGGA GAAACGACGACGACGGAGCTCAAAGTGCGGATGTTCAACACGTACACCCT GCAAAACCCGATTACCCTGTACCCTTGGGAGCACATGGCGGAGCCTTACA AGCCCTCCACGATGGAGCTGTTGGGCTGGCCCGTGTCGGGAGAACACCTA GAATACAGGTGA back to topprotein sequence of EsuBft954_5a-0001 >EsuBft954_5 ID=EsuBft954_5|Name=EsuBft954_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=172bp
MPQNKRRRAEEMDSLIRDTEAMREQRLGSWPSLRCGKSMAFRNERRHLVM LSVLAGVVFFGCGLLGGTTSSRYIAPSSPSRGSFSASSTPVEQSGLDGGA MAAGEQQQAKLAAEVDSSGETTTTELKVRMFNTYTLQNPITLYPWEHMAE PYKPSTMELLGWPVSGEHLEYR back to topmRNA from alignment at Scaffold_235:232332..232893- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft954_5a-0001 ID=EsuBft954_5a-0001|Name=EsuBft954_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=562bp|location=Sequence derived from alignment at Scaffold_235:232332..232893- (Ectocarpus subulatus male Bft15b) TTCACGTGGTTGCGCCCCGGAAGTGGCGAGTGGAGCGAGCACTATGCCCC
AAAACAAGAGAAGAAGAGCGGAGGAGATGGACTCGTTGATCCGGGACACG
GAAGCGATGAGAGAGCAACGCCTGGGTTCGTGGCCCAGCTTGCGGTGTGG
CAAGAGCATGGCGTTCCGCAACGAGCGGCGGCATCTCGTCATGCTATCCG
TGCTTGCCGGTGTGGTGTTCTTCGGGTGCGGGTTGCTTGGAGGAACGACG
TCGTCGAGATACATCGCGCCGTCATCCCCGAGCAGGGGTTCATTCAGCGC
CTCGTCAACGCCGGTGGAGCAATCGGGGTTGGACGGGGGAGCGATGGCAG
CTGGGGAGCAGCAGCAAGCCAAGTTGGCGGCGGAGGTGGATAGTAGCGGA
GAAACGACGACGACGGAGCTCAAAGTGCGGATGTTCAACACGTACACCCT
GCAAAACCCGATTACCCTGTACCCTTGGGAGCACATGGCGGAGCCTTACA
AGCCCTCCACGATGGAGCTGTTGGGCTGGCCCGTGTCGGGAGAACACCTA
GAATACAGGTGA back to topCoding sequence (CDS) from alignment at Scaffold_235:232332..232893- >EsuBft954_5a-0001 ID=EsuBft954_5a-0001|Name=EsuBft954_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=519bp|location=Sequence derived from alignment at Scaffold_235:232332..232893- (Ectocarpus subulatus male Bft15b) ATGCCCCAAAACAAGAGAAGAAGAGCGGAGGAGATGGACTCGTTGATCCG GGACACGGAAGCGATGAGAGAGCAACGCCTGGGTTCGTGGCCCAGCTTGC GGTGTGGCAAGAGCATGGCGTTCCGCAACGAGCGGCGGCATCTCGTCATG CTATCCGTGCTTGCCGGTGTGGTGTTCTTCGGGTGCGGGTTGCTTGGAGG AACGACGTCGTCGAGATACATCGCGCCGTCATCCCCGAGCAGGGGTTCAT TCAGCGCCTCGTCAACGCCGGTGGAGCAATCGGGGTTGGACGGGGGAGCG ATGGCAGCTGGGGAGCAGCAGCAAGCCAAGTTGGCGGCGGAGGTGGATAG TAGCGGAGAAACGACGACGACGGAGCTCAAAGTGCGGATGTTCAACACGT ACACCCTGCAAAACCCGATTACCCTGTACCCTTGGGAGCACATGGCGGAG CCTTACAAGCCCTCCACGATGGAGCTGTTGGGCTGGCCCGTGTCGGGAGA ACACCTAGAATACAGGTGA back to top
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