EsuBft954_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft954_5a-0001
Unique NameEsuBft954_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_235contigScaffold_235:232332..232893 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FNR4
ProteomeIdEsuBft954_5
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length56
Hectar predicted targeting categorysignal anchor
Evalue3.02e-58
EggNOG OGs2CZRH@1|root,2SBDH@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionCommon central domain of tyrosinase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft954_5aEsuBft954_5aEctocarpus subulatus male Bft15bgeneScaffold_235 232332..232893 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft954_5a-0001-exonEsuBft954_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_235 232332..232893 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft954_5a-0001-cdsEsuBft954_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_235 232332..232850 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft954_5a-0001-exonagat-five_prime_utr-15262Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_235 232851..232893 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft954_5a-0001EsuBft954_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_235 232332..232850 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft954_5a-0001 ID=EsuBft954_5a-0001|Name=EsuBft954_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=562bp|location=Sequence derived from alignment at Scaffold_235:232332..232893- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTCACGTGGTTGCGCCCCGGAAGTGGCGAGTGGAGCGAGCACTATGCCCC
AAAACAAGAGAAGAAGAGCGGAGGAGATGGACTCGTTGATCCGGGACACG
GAAGCGATGAGAGAGCAACGCCTGGGTTCGTGGCCCAGCTTGCGGTGTGG
CAAGAGCATGGCGTTCCGCAACGAGCGGCGGCATCTCGTCATGCTATCCG
TGCTTGCCGGTGTGGTGTTCTTCGGGTGCGGGTTGCTTGGAGGAACGACG
TCGTCGAGATACATCGCGCCGTCATCCCCGAGCAGGGGTTCATTCAGCGC
CTCGTCAACGCCGGTGGAGCAATCGGGGTTGGACGGGGGAGCGATGGCAG
CTGGGGAGCAGCAGCAAGCCAAGTTGGCGGCGGAGGTGGATAGTAGCGGA
GAAACGACGACGACGGAGCTCAAAGTGCGGATGTTCAACACGTACACCCT
GCAAAACCCGATTACCCTGTACCCTTGGGAGCACATGGCGGAGCCTTACA
AGCCCTCCACGATGGAGCTGTTGGGCTGGCCCGTGTCGGGAGAACACCTA
GAATACAGGTGA
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protein sequence of EsuBft954_5a-0001

>EsuBft954_5 ID=EsuBft954_5|Name=EsuBft954_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=172bp
MPQNKRRRAEEMDSLIRDTEAMREQRLGSWPSLRCGKSMAFRNERRHLVM
LSVLAGVVFFGCGLLGGTTSSRYIAPSSPSRGSFSASSTPVEQSGLDGGA
MAAGEQQQAKLAAEVDSSGETTTTELKVRMFNTYTLQNPITLYPWEHMAE
PYKPSTMELLGWPVSGEHLEYR
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mRNA from alignment at Scaffold_235:232332..232893-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft954_5a-0001 ID=EsuBft954_5a-0001|Name=EsuBft954_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=562bp|location=Sequence derived from alignment at Scaffold_235:232332..232893- (Ectocarpus subulatus male Bft15b)
TTCACGTGGTTGCGCCCCGGAAGTGGCGAGTGGAGCGAGCACTATGCCCC
AAAACAAGAGAAGAAGAGCGGAGGAGATGGACTCGTTGATCCGGGACACG
GAAGCGATGAGAGAGCAACGCCTGGGTTCGTGGCCCAGCTTGCGGTGTGG
CAAGAGCATGGCGTTCCGCAACGAGCGGCGGCATCTCGTCATGCTATCCG
TGCTTGCCGGTGTGGTGTTCTTCGGGTGCGGGTTGCTTGGAGGAACGACG
TCGTCGAGATACATCGCGCCGTCATCCCCGAGCAGGGGTTCATTCAGCGC
CTCGTCAACGCCGGTGGAGCAATCGGGGTTGGACGGGGGAGCGATGGCAG
CTGGGGAGCAGCAGCAAGCCAAGTTGGCGGCGGAGGTGGATAGTAGCGGA
GAAACGACGACGACGGAGCTCAAAGTGCGGATGTTCAACACGTACACCCT
GCAAAACCCGATTACCCTGTACCCTTGGGAGCACATGGCGGAGCCTTACA
AGCCCTCCACGATGGAGCTGTTGGGCTGGCCCGTGTCGGGAGAACACCTA
GAATACAGGTGA
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Coding sequence (CDS) from alignment at Scaffold_235:232332..232893-

>EsuBft954_5a-0001 ID=EsuBft954_5a-0001|Name=EsuBft954_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=519bp|location=Sequence derived from alignment at Scaffold_235:232332..232893- (Ectocarpus subulatus male Bft15b)
ATGCCCCAAAACAAGAGAAGAAGAGCGGAGGAGATGGACTCGTTGATCCG
GGACACGGAAGCGATGAGAGAGCAACGCCTGGGTTCGTGGCCCAGCTTGC
GGTGTGGCAAGAGCATGGCGTTCCGCAACGAGCGGCGGCATCTCGTCATG
CTATCCGTGCTTGCCGGTGTGGTGTTCTTCGGGTGCGGGTTGCTTGGAGG
AACGACGTCGTCGAGATACATCGCGCCGTCATCCCCGAGCAGGGGTTCAT
TCAGCGCCTCGTCAACGCCGGTGGAGCAATCGGGGTTGGACGGGGGAGCG
ATGGCAGCTGGGGAGCAGCAGCAAGCCAAGTTGGCGGCGGAGGTGGATAG
TAGCGGAGAAACGACGACGACGGAGCTCAAAGTGCGGATGTTCAACACGT
ACACCCTGCAAAACCCGATTACCCTGTACCCTTGGGAGCACATGGCGGAG
CCTTACAAGCCCTCCACGATGGAGCTGTTGGGCTGGCCCGTGTCGGGAGA
ACACCTAGAATACAGGTGA
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