Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FNS2 |
| ProteomeId | EsuBft3854_2 |
| Protein domains | IPR029058 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 36 |
| Hectar predicted targeting category | other localisation |
| Evalue | 3.14e-63 |
| EggNOG OGs | COG0596@1|root,KOG1454@2759|Eukaryota |
| Ec32 ortholog description | Alpha/Beta hydrolase fold |
| Ec32 ortholog | Ec-01_004460.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | regulation of endocannabinoid signaling pathway |
| COG category | O |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft3854_2a-0001 ID=EsuBft3854_2a-0001|Name=EsuBft3854_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=363bp|location=Sequence derived from alignment at Scaffold_235:158902..161209+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCGCACCCAGGGGGAGGTGCAGCCGGGAGAGCAGCTGCTCCAGAACAC
GCTCGACGTGTGGAAGGGCCCGTCCATGATCATCACCGGCGACGATGATC
CGACCGTCCCCACGCAGTCAAGCATATACATCGCGGAGGCGATGGAGGGG
CGGCTCGTGGTAGTGGAGTCGTGTTCCCACATACCCATGGACGAGCGAGC
AGAGATTCATTCATCCCATCCCGCCTTTTTCCCCGTCTCCGGCTCGTGTG
TCGACGTTTGTGTTGTCAAGGTCTTCTCTTCCGCGGTGCTGAGTTTCGCC
AATAGCGTAGAGGTCGAGGACGCGTGGCAAGCCGTCGGCAGCAGCGCCAA
ATCTTGGTGGTAG back to topprotein sequence of EsuBft3854_2a-0001 >EsuBft3854_2 ID=EsuBft3854_2|Name=EsuBft3854_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=120bp
MRTQGEVQPGEQLLQNTLDVWKGPSMIITGDDDPTVPTQSSIYIAEAMEG
RLVVVESCSHIPMDERAEIHSSHPAFFPVSGSCVDVCVVKVFSSAVLSFA
NSVEVEDAWQAVGSSAKSWW back to topmRNA from alignment at Scaffold_235:158902..161209+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft3854_2a-0001 ID=EsuBft3854_2a-0001|Name=EsuBft3854_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2308bp|location=Sequence derived from alignment at Scaffold_235:158902..161209+ (Ectocarpus subulatus male Bft15b)
ATGCGCACCCAGGGGGAGGTGCAGCCGGGAGAGCAGCTGCTCCAGAACAC
GCTCGACGTGTGGAAGGGCCCGTCCATGATCATCACCGGCGACGATGATC
CGACCGTCCCCACGCAGGTTTGTCGCAGAGCAGGCGGCGTTCGGCTGCAA
CCGAATCGCCAACAACGGGTGTCTTCTCTTTCGCAATCGATAGTGAGACG
AAAAGGCAAACAAACATCGACGTGATCCGACCGACCGCACTCGCCCAGTT
TGTCGCAGGGTCGCGGTAGTAGCAGCAGCAGCGGGCGGTATAATCGGCTG
CTACCGAATCATCAACAGATACCTTTTCTGAAGCAATCGGTAGTCAGACG
AAAAGGCAAACACCAACAACAGGTGAAGAAAGGCAGGGATATCAAGAGCG
GTGATGCCGTCGTCTGCCACCCTTTGATTTTTCGCTTCTCCCTTATCTGT
GGCGATTTTCGGCGGCGTGGGTTTGCCATACCCTTTCGCTCCCTCTCCCC
CACCGTGCTTCGAGATCACACGATAGTTTTCGGCGTCGCCCCTGCCAAGT
CGGGGAGGGGTTAGCAGAAAGCCTTCTTGCCTCCTGTGCTCGTTGGTCCT
CCCTTTTGCTATGTTGTCTGGCGACAACAGTACACCACAGACGGACGGCC
CGCACACCTTTGGCGCGCATGTTTCATGAAAGTGTCGTCGCTCTTGTCGA
AACTAACCTCGCTCGCTGCGGCGAACGCCAGCCGTGCTTCACCCCCTCCT
AAGCTGGCGCGGTCAGTTGCGCCTTGCGGGACGTTTCGCCCTACAGTACT
TATGATCGAGCGTGTCCGCCCCTGTCCCAAATTCTCCCCTGCCCGCCCCC
CCCGGTGTTTTGCCATCGGGGTTGGGTTTTCGTCGCTTGGCAACGACGTT
GTAAAACAAGCCGCCCCCGCCGGTGTTTGCCATCGGGATTGGGTTTTCGT
CGCTTGGCAAAGACGTTGTAAAAGAAGCCAATTCACTTCGTGANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCCGTTGCCCCCC
TCCGTGTTCCCCTCCGAACCTGCCCGCACCCCCCCACCCATCCGAACCTA
CGTTTGCCGGTGCGACGGGATGACGCAGTCAAGCATATACATCGCGGAGG
CGATGGAGGGGCGGCTCGTGGTAGTGGAGTCGTGTTCCCACATACCCATG
GACGAGCGAGCAGAGGTAGGCTGGCGTACCCCCCTCCCTTGTGTGTCTTG
ATGAAAATCTGTGACCCGACATAGATGTGGGGGGGGGGGGCGCTGTTCAG
TGCCGGGGTTACGCGTTTTGTTGTGAACATTTCGGGGTGTGCTTTCGATC
GGCGCACCATTGGGTTTGTGGTCCGTCTCGGCTCATCTCTCGCGTTCGTT
TGCGCAGCGGGTGCGTATGGGTTGGTTGTATGGGTAATTTAAAGTCGATC
AGTCAGTATGTATCTTAAATTGATCCATGCTGTCGGTGCAGGGCTTTGAG
AACGGTGCCGATATATTTGTTAGGTCCATTCCCCATGCTGTTTCTGAGTT
TAACGAAACAGGTGTGATTTGCAGACATGCACAACATCAGCTGCTGTGCT
TAGTATCTTTTGTCGTGGCTCTCTGTGCGTGTTGCCTTACGTAGTTGTGG
ATCTTTCTTGGACTCTTTCTCGTCCAAGATAGCGCCATGGGCTATCTAGA
TTCATTCATCCCATCCCGCCTTTTTCCCCGTCTCCGGCTCGTGTGTCGAC
GTTTGTGTTGTCAAGGTCTTCTCTTCCGCGGTGCTGAGTTTCGCCAATAG
CGTAGAGGTCGAGGACGCGTGGCAAGCCGTCGGCAGCAGCGCCAAATCTT
GGTGGTAG back to topCoding sequence (CDS) from alignment at Scaffold_235:158902..161209+ >EsuBft3854_2a-0001 ID=EsuBft3854_2a-0001|Name=EsuBft3854_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=363bp|location=Sequence derived from alignment at Scaffold_235:158902..161209+ (Ectocarpus subulatus male Bft15b)
ATGCGCACCCAGGGGGAGGTGCAGCCGGGAGAGCAGCTGCTCCAGAACAC
GCTCGACGTGTGGAAGGGCCCGTCCATGATCATCACCGGCGACGATGATC
CGACCGTCCCCACGCAGTCAAGCATATACATCGCGGAGGCGATGGAGGGG
CGGCTCGTGGTAGTGGAGTCGTGTTCCCACATACCCATGGACGAGCGAGC
AGAGATTCATTCATCCCATCCCGCCTTTTTCCCCGTCTCCGGCTCGTGTG
TCGACGTTTGTGTTGTCAAGGTCTTCTCTTCCGCGGTGCTGAGTTTCGCC
AATAGCGTAGAGGTCGAGGACGCGTGGCAAGCCGTCGGCAGCAGCGCCAA
ATCTTGGTGGTAG back to top
|