EsuBft3854_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3854_2a-0001
Unique NameEsuBft3854_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_235contigScaffold_235:158902..161209 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FNS2
ProteomeIdEsuBft3854_2
Protein domainsIPR029058
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length36
Hectar predicted targeting categoryother localisation
Evalue3.14e-63
EggNOG OGsCOG0596@1|root,KOG1454@2759|Eukaryota
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-01_004460.1
Date last modified2016-06-14
Date creation2016-06-14
Descriptionregulation of endocannabinoid signaling pathway
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3854_2aEsuBft3854_2aEctocarpus subulatus male Bft15bgeneScaffold_235 158902..161209 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3854_2a-0001-exonagat-exon-35136Ectocarpus subulatus male Bft15bexonScaffold_235 158902..159018 +
EsuBft3854_2a-0001-exonEsuBft3854_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_235 160480..160566 +
EsuBft3854_2a-0001-exonagat-exon-35135Ectocarpus subulatus male Bft15bexonScaffold_235 161051..161209 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3854_2a-0001-cdsEsuBft3854_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_235 158902..159018 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3854_2a-0001EsuBft3854_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_235 158902..161209 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3854_2a-0001 ID=EsuBft3854_2a-0001|Name=EsuBft3854_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=363bp|location=Sequence derived from alignment at Scaffold_235:158902..161209+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCACCCAGGGGGAGGTGCAGCCGGGAGAGCAGCTGCTCCAGAACAC
GCTCGACGTGTGGAAGGGCCCGTCCATGATCATCACCGGCGACGATGATC
CGACCGTCCCCACGCAGTCAAGCATATACATCGCGGAGGCGATGGAGGGG
CGGCTCGTGGTAGTGGAGTCGTGTTCCCACATACCCATGGACGAGCGAGC
AGAGATTCATTCATCCCATCCCGCCTTTTTCCCCGTCTCCGGCTCGTGTG
TCGACGTTTGTGTTGTCAAGGTCTTCTCTTCCGCGGTGCTGAGTTTCGCC
AATAGCGTAGAGGTCGAGGACGCGTGGCAAGCCGTCGGCAGCAGCGCCAA
ATCTTGGTGGTAG
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protein sequence of EsuBft3854_2a-0001

>EsuBft3854_2 ID=EsuBft3854_2|Name=EsuBft3854_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=120bp
MRTQGEVQPGEQLLQNTLDVWKGPSMIITGDDDPTVPTQSSIYIAEAMEG
RLVVVESCSHIPMDERAEIHSSHPAFFPVSGSCVDVCVVKVFSSAVLSFA
NSVEVEDAWQAVGSSAKSWW
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mRNA from alignment at Scaffold_235:158902..161209+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3854_2a-0001 ID=EsuBft3854_2a-0001|Name=EsuBft3854_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2308bp|location=Sequence derived from alignment at Scaffold_235:158902..161209+ (Ectocarpus subulatus male Bft15b)
ATGCGCACCCAGGGGGAGGTGCAGCCGGGAGAGCAGCTGCTCCAGAACAC
GCTCGACGTGTGGAAGGGCCCGTCCATGATCATCACCGGCGACGATGATC
CGACCGTCCCCACGCAGGTTTGTCGCAGAGCAGGCGGCGTTCGGCTGCAA
CCGAATCGCCAACAACGGGTGTCTTCTCTTTCGCAATCGATAGTGAGACG
AAAAGGCAAACAAACATCGACGTGATCCGACCGACCGCACTCGCCCAGTT
TGTCGCAGGGTCGCGGTAGTAGCAGCAGCAGCGGGCGGTATAATCGGCTG
CTACCGAATCATCAACAGATACCTTTTCTGAAGCAATCGGTAGTCAGACG
AAAAGGCAAACACCAACAACAGGTGAAGAAAGGCAGGGATATCAAGAGCG
GTGATGCCGTCGTCTGCCACCCTTTGATTTTTCGCTTCTCCCTTATCTGT
GGCGATTTTCGGCGGCGTGGGTTTGCCATACCCTTTCGCTCCCTCTCCCC
CACCGTGCTTCGAGATCACACGATAGTTTTCGGCGTCGCCCCTGCCAAGT
CGGGGAGGGGTTAGCAGAAAGCCTTCTTGCCTCCTGTGCTCGTTGGTCCT
CCCTTTTGCTATGTTGTCTGGCGACAACAGTACACCACAGACGGACGGCC
CGCACACCTTTGGCGCGCATGTTTCATGAAAGTGTCGTCGCTCTTGTCGA
AACTAACCTCGCTCGCTGCGGCGAACGCCAGCCGTGCTTCACCCCCTCCT
AAGCTGGCGCGGTCAGTTGCGCCTTGCGGGACGTTTCGCCCTACAGTACT
TATGATCGAGCGTGTCCGCCCCTGTCCCAAATTCTCCCCTGCCCGCCCCC
CCCGGTGTTTTGCCATCGGGGTTGGGTTTTCGTCGCTTGGCAACGACGTT
GTAAAACAAGCCGCCCCCGCCGGTGTTTGCCATCGGGATTGGGTTTTCGT
CGCTTGGCAAAGACGTTGTAAAAGAAGCCAATTCACTTCGTGANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCCGTTGCCCCCC
TCCGTGTTCCCCTCCGAACCTGCCCGCACCCCCCCACCCATCCGAACCTA
CGTTTGCCGGTGCGACGGGATGACGCAGTCAAGCATATACATCGCGGAGG
CGATGGAGGGGCGGCTCGTGGTAGTGGAGTCGTGTTCCCACATACCCATG
GACGAGCGAGCAGAGGTAGGCTGGCGTACCCCCCTCCCTTGTGTGTCTTG
ATGAAAATCTGTGACCCGACATAGATGTGGGGGGGGGGGGCGCTGTTCAG
TGCCGGGGTTACGCGTTTTGTTGTGAACATTTCGGGGTGTGCTTTCGATC
GGCGCACCATTGGGTTTGTGGTCCGTCTCGGCTCATCTCTCGCGTTCGTT
TGCGCAGCGGGTGCGTATGGGTTGGTTGTATGGGTAATTTAAAGTCGATC
AGTCAGTATGTATCTTAAATTGATCCATGCTGTCGGTGCAGGGCTTTGAG
AACGGTGCCGATATATTTGTTAGGTCCATTCCCCATGCTGTTTCTGAGTT
TAACGAAACAGGTGTGATTTGCAGACATGCACAACATCAGCTGCTGTGCT
TAGTATCTTTTGTCGTGGCTCTCTGTGCGTGTTGCCTTACGTAGTTGTGG
ATCTTTCTTGGACTCTTTCTCGTCCAAGATAGCGCCATGGGCTATCTAGA
TTCATTCATCCCATCCCGCCTTTTTCCCCGTCTCCGGCTCGTGTGTCGAC
GTTTGTGTTGTCAAGGTCTTCTCTTCCGCGGTGCTGAGTTTCGCCAATAG
CGTAGAGGTCGAGGACGCGTGGCAAGCCGTCGGCAGCAGCGCCAAATCTT
GGTGGTAG
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Coding sequence (CDS) from alignment at Scaffold_235:158902..161209+

>EsuBft3854_2a-0001 ID=EsuBft3854_2a-0001|Name=EsuBft3854_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=363bp|location=Sequence derived from alignment at Scaffold_235:158902..161209+ (Ectocarpus subulatus male Bft15b)
ATGCGCACCCAGGGGGAGGTGCAGCCGGGAGAGCAGCTGCTCCAGAACAC
GCTCGACGTGTGGAAGGGCCCGTCCATGATCATCACCGGCGACGATGATC
CGACCGTCCCCACGCAGTCAAGCATATACATCGCGGAGGCGATGGAGGGG
CGGCTCGTGGTAGTGGAGTCGTGTTCCCACATACCCATGGACGAGCGAGC
AGAGATTCATTCATCCCATCCCGCCTTTTTCCCCGTCTCCGGCTCGTGTG
TCGACGTTTGTGTTGTCAAGGTCTTCTCTTCCGCGGTGCTGAGTTTCGCC
AATAGCGTAGAGGTCGAGGACGCGTGGCAAGCCGTCGGCAGCAGCGCCAA
ATCTTGGTGGTAG
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