EsuBft321_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft321_11a-0001
Unique NameEsuBft321_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_235contigScaffold_235:124561..124872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G6Q2
ProteomeIdEsuBft321_11
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length31
Hectar predicted targeting categorysignal anchor
Evalue0.000997
EggNOG OGs2AWDH@1|root,2RZYI@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionDDE superfamily endonuclease
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft321_11aEsuBft321_11aEctocarpus subulatus male Bft15bgeneScaffold_235 124561..124872 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft321_11a-0001-exonEsuBft321_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_235 124561..124872 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft321_11a-0001-cdsEsuBft321_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_235 124561..124767 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft321_11a-0001-exonagat-three_prime_utr-12645Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_235 124768..124872 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft321_11a-0001EsuBft321_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_235 124561..124767 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft321_11a-0001 ID=EsuBft321_11a-0001|Name=EsuBft321_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=312bp|location=Sequence derived from alignment at Scaffold_235:124561..124872+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGCCTACAGCGTGGTAAGATTCGGCATGAGAGGCATGGCCAAAT
CATGCAGATGATTACAGCGGCTCTGCTGTGTGCAGTGGCTGGAGAGGAGG
AGCTTTTCCTCGTCCTGGCGGTAGTGGCAATGCGGCAACTCCAATGCGTT
CCCAACTCAAACCACGCTCCCAACTCGAACACGCCGCCGGGTGAACTGCT
GTGCTAACCCTGAATCCTAAGCACTTGACCGCTGGTGTGACTGATGACTC
GCCACCTCCCTCAAGGGGCGGGGATGCACACGAAGTCCGCCGTAGGAGAG
GCGGCTACCGCG
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protein sequence of EsuBft321_11a-0001

>EsuBft321_11 ID=EsuBft321_11|Name=EsuBft321_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=68bp
MARLQRGKIRHERHGQIMQMITAALLCAVAGEEELFLVLAVVAMRQLQCV
PNSNHAPNSNTPPGELLC
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mRNA from alignment at Scaffold_235:124561..124872+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft321_11a-0001 ID=EsuBft321_11a-0001|Name=EsuBft321_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=312bp|location=Sequence derived from alignment at Scaffold_235:124561..124872+ (Ectocarpus subulatus male Bft15b)
ATGGCGCGCCTACAGCGTGGTAAGATTCGGCATGAGAGGCATGGCCAAAT
CATGCAGATGATTACAGCGGCTCTGCTGTGTGCAGTGGCTGGAGAGGAGG
AGCTTTTCCTCGTCCTGGCGGTAGTGGCAATGCGGCAACTCCAATGCGTT
CCCAACTCAAACCACGCTCCCAACTCGAACACGCCGCCGGGTGAACTGCT
GTGCTAACCCTGAATCCTAAGCACTTGACCGCTGGTGTGACTGATGACTC
GCCACCTCCCTCAAGGGGCGGGGATGCACACGAAGTCCGCCGTAGGAGAG
GCGGCTACCGCG
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Coding sequence (CDS) from alignment at Scaffold_235:124561..124872+

>EsuBft321_11a-0001 ID=EsuBft321_11a-0001|Name=EsuBft321_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=207bp|location=Sequence derived from alignment at Scaffold_235:124561..124872+ (Ectocarpus subulatus male Bft15b)
ATGGCGCGCCTACAGCGTGGTAAGATTCGGCATGAGAGGCATGGCCAAAT
CATGCAGATGATTACAGCGGCTCTGCTGTGTGCAGTGGCTGGAGAGGAGG
AGCTTTTCCTCGTCCTGGCGGTAGTGGCAATGCGGCAACTCCAATGCGTT
CCCAACTCAAACCACGCTCCCAACTCGAACACGCCGCCGGGTGAACTGCT
GTGCTAA
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