Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7G6Q2 |
| ProteomeId | EsuBft321_11 |
| Protein domains | TRANSMEMBRANE |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | TMhelix |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Max annot lvl | 2759|Eukaryota |
| Length | 31 |
| Hectar predicted targeting category | signal anchor |
| Evalue | 0.000997 |
| EggNOG OGs | 2AWDH@1|root,2RZYI@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | DDE superfamily endonuclease |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft321_11a-0001 ID=EsuBft321_11a-0001|Name=EsuBft321_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=312bp|location=Sequence derived from alignment at Scaffold_235:124561..124872+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGCGCGCCTACAGCGTGGTAAGATTCGGCATGAGAGGCATGGCCAAAT
CATGCAGATGATTACAGCGGCTCTGCTGTGTGCAGTGGCTGGAGAGGAGG
AGCTTTTCCTCGTCCTGGCGGTAGTGGCAATGCGGCAACTCCAATGCGTT
CCCAACTCAAACCACGCTCCCAACTCGAACACGCCGCCGGGTGAACTGCT
GTGCTAACCCTGAATCCTAAGCACTTGACCGCTGGTGTGACTGATGACTC
GCCACCTCCCTCAAGGGGCGGGGATGCACACGAAGTCCGCCGTAGGAGAG
GCGGCTACCGCG back to topprotein sequence of EsuBft321_11a-0001 >EsuBft321_11 ID=EsuBft321_11|Name=EsuBft321_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=68bp
MARLQRGKIRHERHGQIMQMITAALLCAVAGEEELFLVLAVVAMRQLQCV
PNSNHAPNSNTPPGELLC back to topmRNA from alignment at Scaffold_235:124561..124872+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft321_11a-0001 ID=EsuBft321_11a-0001|Name=EsuBft321_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=312bp|location=Sequence derived from alignment at Scaffold_235:124561..124872+ (Ectocarpus subulatus male Bft15b)
ATGGCGCGCCTACAGCGTGGTAAGATTCGGCATGAGAGGCATGGCCAAAT
CATGCAGATGATTACAGCGGCTCTGCTGTGTGCAGTGGCTGGAGAGGAGG
AGCTTTTCCTCGTCCTGGCGGTAGTGGCAATGCGGCAACTCCAATGCGTT
CCCAACTCAAACCACGCTCCCAACTCGAACACGCCGCCGGGTGAACTGCT
GTGCTAACCCTGAATCCTAAGCACTTGACCGCTGGTGTGACTGATGACTC
GCCACCTCCCTCAAGGGGCGGGGATGCACACGAAGTCCGCCGTAGGAGAG
GCGGCTACCGCG back to topCoding sequence (CDS) from alignment at Scaffold_235:124561..124872+ >EsuBft321_11a-0001 ID=EsuBft321_11a-0001|Name=EsuBft321_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=207bp|location=Sequence derived from alignment at Scaffold_235:124561..124872+ (Ectocarpus subulatus male Bft15b)
ATGGCGCGCCTACAGCGTGGTAAGATTCGGCATGAGAGGCATGGCCAAAT
CATGCAGATGATTACAGCGGCTCTGCTGTGTGCAGTGGCTGGAGAGGAGG
AGCTTTTCCTCGTCCTGGCGGTAGTGGCAATGCGGCAACTCCAATGCGTT
CCCAACTCAAACCACGCTCCCAACTCGAACACGCCGCCGGGTGAACTGCT
GTGCTAA back to top
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