|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7G3V2 |
| ProteomeId | EsuBft321_9 |
| Protein domains | PTHR24063 |
| Protein domains | IPR003663 |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | IPR005828 |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | G3DSA |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | IPR005829 |
| Protein domains | TMhelix |
| Protein domains | IPR020846 |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | TRANSMEMBRANE |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | solute carrier family facilitated glucose transporter member 9 os:pongo abelii gn:slc2a9 pe:2 s [Automatic annotation] |
| Nb exon | 4 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1719 |
| Hectar predicted targeting category | signal peptide |
| Evalue | 2.72e-124 |
| EggNOG OGs | KOG0254@1|root,KOG0254@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| KEGG ko | ko:K08150,ko:K20286 |
| KEGG TC | 2.A.1.1.25,2.A.1.1.62,2.A.1.1.63,2.A.1.1.66,2.A.1.8 |
| GOs | GO:0003674,GO:0005215,GO:0005351,GO:0005355,GO:0005402,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008324,GO:0008643,GO:0008645,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0012505,GO:0015075,GO:0015077,GO:0015078,GO:0015144,GO:0015145,GO:0015149,GO:0015291,GO:0015293,GO:0015294,GO:0015295,GO:0015318,GO:0015672,GO:0015749,GO:0022804,GO:0022857,GO:0022890,GO:0031410,GO:0031967,GO:0031975,GO:0031982,GO:0031984,GO:0034219,GO:0034220,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046323,GO:0051119,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0097708,GO:0098655,GO:0098660,GO:0098662,GO:0098791,GO:1902600,GO:1904659 |
| Description | glucose import |
| COG category | U |
| BRITE | ko00000,ko02000,ko04131 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0055085 |
| GO | 0015749 |
| GO | 0016021 |
| GO | 0022891 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft321_9a-0001 ID=EsuBft321_9a-0001|Name=EsuBft321_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1719bp|location=Sequence derived from alignment at Scaffold_235:109646..113672- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TGTGGCAACGTGAGTACTCGTGTTCTAGCACAAGTCGTGGGAGCAAGTTC
AATATCCTAGATCGCTGGGGTAGCGCTTGCCCAGAAGGAGGGAGACACCG
CACGACGAACGACACTGGCCCGGCCCTGCACTCCTGCACCCCTGCACTCC
GAACACGGAACTGGCTCGTTTCGCCGCATATATTTGTACTACGGCAGAAG
AATGCAGCAGCACCATCGGCCCTCCGCAGTGTCACGCAGGATGTGGGCCT
CGAGCCTCATCAGCGCCCTACCCAGCTTCTTATTCGGGTACTGCCTCTCA
GCGCTCAACACCGTGCTCGTCACGGGAGACGCCGCCAGCCCGGAGGCCTG
CCTCTCCGGGGAGGACGCCACCTGCCCCACGGGCTCGACGCTCAGAGACC
TGGACCTGCCCACCGTCCAGCAGGAGGTGGCCACCTCCCTCCTGGTCGCG
GGGGCCTGGCTGGGGTCCATGATGGCGAGCAGGCCGTCGGATGCGCTCGG
CCGCCGGGCGACGCTGCTGTACAACAACGCCCTGTTCATCGCGGGCGGCT
TGTTGTGCGCCGTGGCTGTGGGGTCTTCGGAACTGTTCGTCGGAAGGTTC
CTGGCAGGGATGGGTGTCGGTTGTGGTTCCGGCGTGGTGCCCGTCCTCCT
CTCCGAGGTGTCCTCCCCGAAGAACCGAGGGGCCGTCGGCTCGATCCACC
AGCTCATGATCAACCTCGGCATCCTGTCGTCCGGGCTCCTGGGATACGCG
CTCGTCGAGGACGTGTCGCATGGCTGGAGATATGTGCAAGGGTTCATCGT
CGTCCCCGCCGCAGTACAGGTGCATCCACAACACCACACACTCCACGACT
GCCTTGTTGAATAGTTGCAAACATGGGTGTGCTGTGAAGCAGCTTATTTT
TGTTGGCGCCACATGTGTACCCCATATTAAGCTCACGTTGGTGGCCTTTT
TTGTTCGGATATTGGGTGATTTGACGCGCGCGTCTTGTCTGAAATTTTCG
CATTTCGTTCCAAGTATTGCATGAAATCTTGCCCGCAGTTGGTGAAATAG
GCCAGGCGCGGTGTACTGCTTGGAGGATTTGTTCCTGTCGCTCACGTTGA
CCCGTTTCGCTTCGGATCGGTCGCGCACGCTACAGTTCACCACCCGTCCA
GCTTCGTCACACGCGCACTGTGTAGGGGTGTCTTGGTAGCCCTTGTCCCG
GTTAAGGTTGGCCTTTCGGATCGGCAACATTTCCGTCCATCGATCCATGA
ACAAATCATGCGTGCTAGTTTGGAGTCTTGGCAGCCACCCGCGACGCCTT
CGGGTACTCTACTTACACAACTATTTTGTTTTGGGGGTTCGACGAAGCAG
TAGTCACATATCATGACCACTCGTGCCTCTATATTTTTGTCCCGAATGCC
ATCAGCTTCGATCAGACCGTTCTGTACCTGTTTCGGTGCATTCTTTGGGA
CGGAAAAGCTGGGAGCGGAGGAATTTACTCGATCGTCCTGACGTTCGACC
ACAACACATTCCTTGCACGCCCTTCTATTCTTACACGTGGGACGCGGATG
AGATGTTCTGACAATGTTGATCCTGCCTCCCCCCTCCCTCTAGCCTCCTT
TCCGACATAAAATCGTTTTCCGTCTCAGCTCGCGCTCGCGGGACTCGTGC
CGGAGTCGGCGCGGTGGCTGGTGAAGCAAGGAAGAATTGCCGANNNNNNN
NNNNNNNNNNNNNNNNNNN back to topprotein sequence of EsuBft321_9a-0001 >EsuBft321_9 ID=EsuBft321_9|Name=EsuBft321_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=220bp
MQQHHRPSAVSRRMWASSLISALPSFLFGYCLSALNTVLVTGDAASPEAC
LSGEDATCPTGSTLRDLDLPTVQQEVATSLLVAGAWLGSMMASRPSDALG
RRATLLYNNALFIAGGLLCAVAVGSSELFVGRFLAGMGVGCGSGVVPVLL
SEVSSPKNRGAVGSIHQLMINLGILSSGLLGYALVEDVSHGWRYVQGFIV
VPAAVQVHPQHHTLHDCLVE back to topmRNA from alignment at Scaffold_235:109646..113672- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft321_9a-0001 ID=EsuBft321_9a-0001|Name=EsuBft321_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4027bp|location=Sequence derived from alignment at Scaffold_235:109646..113672- (Ectocarpus subulatus male Bft15b)
TGTGGCAACGTGAGTACTCGTGTTCTAGCACAAGTCGTGGGAGCAAGTTC
AATATCCTAGATCGCTGGGGTAGCGCTTGCCCAGAAGGAGGGAGACACCG
CACGACGAACGACACTGGCCCGGCCCTGCACTCCTGCACCCCTGCACTCC
GAACACGGAACTGGCTCGTTTCGCCGCATATATTTGTACTACGGCAGAAG
AATGCAGCAGCACCATCGGCCCTCCGCAGTGTCACGCAGGATGTGGGCCT
CGAGCCTCATCAGCGCCCTACCCAGCTTCTTATTCGGGTGAGCAGTGTGA
TACAGAGCTGCAGATGTGGTTCGTATCAGGATCGGACACAGATGCAGGTG
ACAGAACGGCGTGATGTCCTCGAAGACCTGGCAGTAGCAAAGCACACCTC
CAGTGCCCACTGCGGGTTATTCGACCGCACGTCGCAAGCGGTGCCTGCTC
TCTTTGCGCTATTCACTATTAGCACGTGCACATATGTTTAGTGCTTGATA
TCCTGCTGTACAAGATTGAGGACCAATTTCAGTACAAGGTCTCCCCATTG
CCCACGTAGCGCACACACACTTGCATATTTTACTGCGCATGGATTCGTTG
ATCAACCCCCTGATTTTGGATTTGAAAGTGCCCTGGCTTTCTTAGAGGCA
TCGAAACGTGCACCTCTAGACTACATGTACAGCCATTTGGAGTAACCATG
CATCCGCCATGCATCTTAATTGCGACAACTCTCTACACCTTCATTTCTCT
GCTGGTGGATGCACACAAAAGTTGACGGGCACGGTGGAGACACCGCTCAA
ACCTTGGTCTCCGATACACAGGATGCAACCCGACGGTCTAACGCACTGAA
CGATTATTTGACACGAGGTTCCAAGCAACCACAACATGCATCGTGCGTCC
CACACGCACAACGGCCATGGATACTTCGACGTTCGCGCTTTCTGCTCCAG
ATGTGGTCAGGCAACGTGTTTACAGCGGTAGTTTAACCCCGGCCGACCAA
CATCAATACTGCTGTGGAACCTACTCCTGGAACGATACGGACGTATCGGC
CCGCAGGAAAATTCTTCGTAGATCTGTGCACAGCTTATTTTGGGGGGGGA
GGGATAGATGGGGGTTTAGGTTTTAAACTAAATCCTGTGTAGACACAATA
CCCTTCAAATATGTTCAGTCAAGCAAATTCCCTCTGGAATAGCCCCAAAT
ACGACCGTAATAACAACAACAACAACAACAACAACAACACACACACACAC
ACACACACACGAAAGTCTTTTCATTGGTCAGCCGGTAAGCGCGGTCGATG
CTAATAATAAAAACACACACGAAAGCAGGTACTGCCTCTCAGCGCTCAAC
ACCGTGCTCGTCACGGGAGACGCCGCCAGCCCGGAGGCCTGCCTCTCCGG
GGAGGACGCCACCTGCCCCACGGGCTCGACGCTCAGAGACCTGGACCTGC
CCACCGTCCAGCAGGAGGTGGCCACCTCCCTCCTGGTCGCGGGGGCCTGG
CTGGGGTCCATGATGGCGAGCAGGCCGTCGGATGCGCTCGGCCGCCGGTA
GGTGTCGGCGGGGTAATGCTGTATGGAGGGAGCCGTTGGTCGCCGTGGAC
AGCAAAGCGGCGACCCTCTCACAAAGAAATGTCAATGTCTGGTGCACGGA
AAAAGCCGAGCCTGAGATTAATTTCCACGTGGGGTAAGGAGCGCTATCGT
TCATCGGCCACGAGTGCTCTTCAAAATGCTACTATTCGTAGCTATATACT
TGAAGTATGTAAATAGTTGGTGGCCGATCTTCTCGCACAGTAGCATGTTC
CCCTTTATGAAGAGGGCCAGCTTAGAACTCGGTGCCCGTACTTTATGAAG
GTGTCTCTTTTCTCTGGGTTTCGAATTGGAGACAGGTCTCTTGAACAGGC
CGTCTTTTTGAGCCCTGGATGGGGAGTTCGTACTACCGCCGACTTCTGGC
ATGATACAGCTCCATGCCTACCCCAGAGCATGCTTCCTGTAGACGTGACG
CTCAAGATCAGTGTTCGAGAGACCGCGGCATGAATGATAGTGAGGATCGC
CCCGCATACAACTACCTGGTGCCCTGTCGGCCAGTGCAGGAATTATCCCT
GGGGCCGTTCTGTTTTCCGCACCCCGGCTGTGTGTATATTTTCGCTCGAA
GCTATCTGTCACAAGCTAAACTACCGCCTCATTTTCGGTCGCGGTGCATC
TTCGGCGTTCTTCACCCCTCCGATGTCTCTGATGATCTCCGGAGAACAGG
GCGACGCTGCTGTACAACAACGCCCTGTTCATCGCGGGCGGCTTGTTGTG
CGCCGTGGCTGTGGGGTCTTCGGAACTGTTCGTCGGAAGGTTCCTGGCAG
GGATGGGTGTCGGGTGAGTGGTGAATAGACCCACGAGTTCTGCCGGAGCC
CCTTTGCGTTATGGTAGCCTTGCTGGTCTTTTTTTTTTTCTTAAATGCTT
CGTTTATGCTGTTGTGGTACATGATTGCGTCTCTGAAGCAAGTTCTGGCG
TTCTTCGAGGGCACGGCTGTAGCCTTGAATGTTGTTTTTTTGCGGTCGTT
AGGGTTGACCGGAGTAGCGGTGAGCTACACTGCCCCCCTCATCGTGTCGT
TCCCTTTGTTCACCCTTGAAATGGCCTCAAGCCCCGGTCCTCCCTCGGAC
GCCCTATGTCAGGCGATGTAATGGTGCCTCCGCTTAGGCATGTCCCGGAC
ATCCTTTTGGTGTCTGAGAGGAGGCAAGAAAACGCTGAAAACGCACGCCT
GTTCATTGGTCGTGTTCACTGAAAACGGTTGACCCAGAACTTTCGCTTTT
CTCTTGTTCTTTTCATGTCGTGTTGCCTATCTATCTACGCGTGCGGCTTC
GTTTTTCGTCTTCTCTATTTTGTTTTTTTTCATGTCTGCTTTGTCGTATC
TAAACGCGTGCGTGGCCGCGGCCGGAAGTTGTGGTTCCGGCGTGGTGCCC
GTCCTCCTCTCCGAGGTGTCCTCCCCGAAGAACCGAGGGGCCGTCGGCTC
GATCCACCAGCTCATGATCAACCTCGGCATCCTGTCGTCCGGGCTCCTGG
GATACGCGCTCGTCGAGGACGTGTCGCATGGCTGGAGATATGTGCAAGGG
TTCATCGTCGTCCCCGCCGCAGTACAGGTGCATCCACAACACCACACACT
CCACGACTGCCTTGTTGAATAGTTGCAAACATGGGTGTGCTGTGAAGCAG
CTTATTTTTGTTGGCGCCACATGTGTACCCCATATTAAGCTCACGTTGGT
GGCCTTTTTTGTTCGGATATTGGGTGATTTGACGCGCGCGTCTTGTCTGA
AATTTTCGCATTTCGTTCCAAGTATTGCATGAAATCTTGCCCGCAGTTGG
TGAAATAGGCCAGGCGCGGTGTACTGCTTGGAGGATTTGTTCCTGTCGCT
CACGTTGACCCGTTTCGCTTCGGATCGGTCGCGCACGCTACAGTTCACCA
CCCGTCCAGCTTCGTCACACGCGCACTGTGTAGGGGTGTCTTGGTAGCCC
TTGTCCCGGTTAAGGTTGGCCTTTCGGATCGGCAACATTTCCGTCCATCG
ATCCATGAACAAATCATGCGTGCTAGTTTGGAGTCTTGGCAGCCACCCGC
GACGCCTTCGGGTACTCTACTTACACAACTATTTTGTTTTGGGGGTTCGA
CGAAGCAGTAGTCACATATCATGACCACTCGTGCCTCTATATTTTTGTCC
CGAATGCCATCAGCTTCGATCAGACCGTTCTGTACCTGTTTCGGTGCATT
CTTTGGGACGGAAAAGCTGGGAGCGGAGGAATTTACTCGATCGTCCTGAC
GTTCGACCACAACACATTCCTTGCACGCCCTTCTATTCTTACACGTGGGA
CGCGGATGAGATGTTCTGACAATGTTGATCCTGCCTCCCCCCTCCCTCTA
GCCTCCTTTCCGACATAAAATCGTTTTCCGTCTCAGCTCGCGCTCGCGGG
ACTCGTGCCGGAGTCGGCGCGGTGGCTGGTGAAGCAAGGAAGAATTGCCG
ANNNNNNNNNNNNNNNNNNNNNNNNNN back to topCoding sequence (CDS) from alignment at Scaffold_235:109646..113672- >EsuBft321_9a-0001 ID=EsuBft321_9a-0001|Name=EsuBft321_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=663bp|location=Sequence derived from alignment at Scaffold_235:109646..113672- (Ectocarpus subulatus male Bft15b)
ATGCAGCAGCACCATCGGCCCTCCGCAGTGTCACGCAGGATGTGGGCCTC
GAGCCTCATCAGCGCCCTACCCAGCTTCTTATTCGGGTACTGCCTCTCAG
CGCTCAACACCGTGCTCGTCACGGGAGACGCCGCCAGCCCGGAGGCCTGC
CTCTCCGGGGAGGACGCCACCTGCCCCACGGGCTCGACGCTCAGAGACCT
GGACCTGCCCACCGTCCAGCAGGAGGTGGCCACCTCCCTCCTGGTCGCGG
GGGCCTGGCTGGGGTCCATGATGGCGAGCAGGCCGTCGGATGCGCTCGGC
CGCCGGGCGACGCTGCTGTACAACAACGCCCTGTTCATCGCGGGCGGCTT
GTTGTGCGCCGTGGCTGTGGGGTCTTCGGAACTGTTCGTCGGAAGGTTCC
TGGCAGGGATGGGTGTCGGTTGTGGTTCCGGCGTGGTGCCCGTCCTCCTC
TCCGAGGTGTCCTCCCCGAAGAACCGAGGGGCCGTCGGCTCGATCCACCA
GCTCATGATCAACCTCGGCATCCTGTCGTCCGGGCTCCTGGGATACGCGC
TCGTCGAGGACGTGTCGCATGGCTGGAGATATGTGCAAGGGTTCATCGTC
GTCCCCGCCGCAGTACAGGTGCATCCACAACACCACACACTCCACGACTG
CCTTGTTGAATAG back to top
|