EsuBft321_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft321_9a-0001
Unique NameEsuBft321_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_235contigScaffold_235:109646..113672 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G3V2
ProteomeIdEsuBft321_9
Protein domainsPTHR24063
Protein domainsIPR003663
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsIPR005828
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsG3DSA
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsIPR005829
Protein domainsTMhelix
Protein domainsIPR020846
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsTRANSMEMBRANE
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Notesolute carrier family facilitated glucose transporter member 9 os:pongo abelii gn:slc2a9 pe:2 s [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length1719
Hectar predicted targeting categorysignal peptide
Evalue2.72e-124
EggNOG OGsKOG0254@1|root,KOG0254@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K08150,ko:K20286
KEGG TC2.A.1.1.25,2.A.1.1.62,2.A.1.1.63,2.A.1.1.66,2.A.1.8
GOsGO:0003674,GO:0005215,GO:0005351,GO:0005355,GO:0005402,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008324,GO:0008643,GO:0008645,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0012505,GO:0015075,GO:0015077,GO:0015078,GO:0015144,GO:0015145,GO:0015149,GO:0015291,GO:0015293,GO:0015294,GO:0015295,GO:0015318,GO:0015672,GO:0015749,GO:0022804,GO:0022857,GO:0022890,GO:0031410,GO:0031967,GO:0031975,GO:0031982,GO:0031984,GO:0034219,GO:0034220,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046323,GO:0051119,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0097708,GO:0098655,GO:0098660,GO:0098662,GO:0098791,GO:1902600,GO:1904659
Descriptionglucose import
COG categoryU
BRITEko00000,ko02000,ko04131
Cross References
External references for this mRNA
DatabaseAccession
GO0055085
GO0015749
GO0016021
GO0022891
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft321_9aEsuBft321_9aEctocarpus subulatus male Bft15bgeneScaffold_235 109646..113672 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft321_9a-0001EsuBft321_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_235 110501..113471 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft321_9a-0001-exonagat-exon-90340Ectocarpus subulatus male Bft15bexonScaffold_235 109646..110744 -
EsuBft321_9a-0001-exonagat-exon-90341Ectocarpus subulatus male Bft15bexonScaffold_235 111310..111423 -
EsuBft321_9a-0001-exonEsuBft321_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_235 112126..112344 -
EsuBft321_9a-0001-exonagat-exon-90342Ectocarpus subulatus male Bft15bexonScaffold_235 113386..113672 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft321_9a-0001-exonagat-three_prime_utr-12655Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_235 109646..110500 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft321_9a-0001-cdsEsuBft321_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_235 110501..110744 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft321_9a-0001-exonagat-five_prime_utr-8032Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_235 113472..113672 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft321_9a-0001 ID=EsuBft321_9a-0001|Name=EsuBft321_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1719bp|location=Sequence derived from alignment at Scaffold_235:109646..113672- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTGGCAACGTGAGTACTCGTGTTCTAGCACAAGTCGTGGGAGCAAGTTC
AATATCCTAGATCGCTGGGGTAGCGCTTGCCCAGAAGGAGGGAGACACCG
CACGACGAACGACACTGGCCCGGCCCTGCACTCCTGCACCCCTGCACTCC
GAACACGGAACTGGCTCGTTTCGCCGCATATATTTGTACTACGGCAGAAG
AATGCAGCAGCACCATCGGCCCTCCGCAGTGTCACGCAGGATGTGGGCCT
CGAGCCTCATCAGCGCCCTACCCAGCTTCTTATTCGGGTACTGCCTCTCA
GCGCTCAACACCGTGCTCGTCACGGGAGACGCCGCCAGCCCGGAGGCCTG
CCTCTCCGGGGAGGACGCCACCTGCCCCACGGGCTCGACGCTCAGAGACC
TGGACCTGCCCACCGTCCAGCAGGAGGTGGCCACCTCCCTCCTGGTCGCG
GGGGCCTGGCTGGGGTCCATGATGGCGAGCAGGCCGTCGGATGCGCTCGG
CCGCCGGGCGACGCTGCTGTACAACAACGCCCTGTTCATCGCGGGCGGCT
TGTTGTGCGCCGTGGCTGTGGGGTCTTCGGAACTGTTCGTCGGAAGGTTC
CTGGCAGGGATGGGTGTCGGTTGTGGTTCCGGCGTGGTGCCCGTCCTCCT
CTCCGAGGTGTCCTCCCCGAAGAACCGAGGGGCCGTCGGCTCGATCCACC
AGCTCATGATCAACCTCGGCATCCTGTCGTCCGGGCTCCTGGGATACGCG
CTCGTCGAGGACGTGTCGCATGGCTGGAGATATGTGCAAGGGTTCATCGT
CGTCCCCGCCGCAGTACAGGTGCATCCACAACACCACACACTCCACGACT
GCCTTGTTGAATAGTTGCAAACATGGGTGTGCTGTGAAGCAGCTTATTTT
TGTTGGCGCCACATGTGTACCCCATATTAAGCTCACGTTGGTGGCCTTTT
TTGTTCGGATATTGGGTGATTTGACGCGCGCGTCTTGTCTGAAATTTTCG
CATTTCGTTCCAAGTATTGCATGAAATCTTGCCCGCAGTTGGTGAAATAG
GCCAGGCGCGGTGTACTGCTTGGAGGATTTGTTCCTGTCGCTCACGTTGA
CCCGTTTCGCTTCGGATCGGTCGCGCACGCTACAGTTCACCACCCGTCCA
GCTTCGTCACACGCGCACTGTGTAGGGGTGTCTTGGTAGCCCTTGTCCCG
GTTAAGGTTGGCCTTTCGGATCGGCAACATTTCCGTCCATCGATCCATGA
ACAAATCATGCGTGCTAGTTTGGAGTCTTGGCAGCCACCCGCGACGCCTT
CGGGTACTCTACTTACACAACTATTTTGTTTTGGGGGTTCGACGAAGCAG
TAGTCACATATCATGACCACTCGTGCCTCTATATTTTTGTCCCGAATGCC
ATCAGCTTCGATCAGACCGTTCTGTACCTGTTTCGGTGCATTCTTTGGGA
CGGAAAAGCTGGGAGCGGAGGAATTTACTCGATCGTCCTGACGTTCGACC
ACAACACATTCCTTGCACGCCCTTCTATTCTTACACGTGGGACGCGGATG
AGATGTTCTGACAATGTTGATCCTGCCTCCCCCCTCCCTCTAGCCTCCTT
TCCGACATAAAATCGTTTTCCGTCTCAGCTCGCGCTCGCGGGACTCGTGC
CGGAGTCGGCGCGGTGGCTGGTGAAGCAAGGAAGAATTGCCGANNNNNNN
NNNNNNNNNNNNNNNNNNN
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protein sequence of EsuBft321_9a-0001

>EsuBft321_9 ID=EsuBft321_9|Name=EsuBft321_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=220bp
MQQHHRPSAVSRRMWASSLISALPSFLFGYCLSALNTVLVTGDAASPEAC
LSGEDATCPTGSTLRDLDLPTVQQEVATSLLVAGAWLGSMMASRPSDALG
RRATLLYNNALFIAGGLLCAVAVGSSELFVGRFLAGMGVGCGSGVVPVLL
SEVSSPKNRGAVGSIHQLMINLGILSSGLLGYALVEDVSHGWRYVQGFIV
VPAAVQVHPQHHTLHDCLVE
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mRNA from alignment at Scaffold_235:109646..113672-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft321_9a-0001 ID=EsuBft321_9a-0001|Name=EsuBft321_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4027bp|location=Sequence derived from alignment at Scaffold_235:109646..113672- (Ectocarpus subulatus male Bft15b)
TGTGGCAACGTGAGTACTCGTGTTCTAGCACAAGTCGTGGGAGCAAGTTC
AATATCCTAGATCGCTGGGGTAGCGCTTGCCCAGAAGGAGGGAGACACCG
CACGACGAACGACACTGGCCCGGCCCTGCACTCCTGCACCCCTGCACTCC
GAACACGGAACTGGCTCGTTTCGCCGCATATATTTGTACTACGGCAGAAG
AATGCAGCAGCACCATCGGCCCTCCGCAGTGTCACGCAGGATGTGGGCCT
CGAGCCTCATCAGCGCCCTACCCAGCTTCTTATTCGGGTGAGCAGTGTGA
TACAGAGCTGCAGATGTGGTTCGTATCAGGATCGGACACAGATGCAGGTG
ACAGAACGGCGTGATGTCCTCGAAGACCTGGCAGTAGCAAAGCACACCTC
CAGTGCCCACTGCGGGTTATTCGACCGCACGTCGCAAGCGGTGCCTGCTC
TCTTTGCGCTATTCACTATTAGCACGTGCACATATGTTTAGTGCTTGATA
TCCTGCTGTACAAGATTGAGGACCAATTTCAGTACAAGGTCTCCCCATTG
CCCACGTAGCGCACACACACTTGCATATTTTACTGCGCATGGATTCGTTG
ATCAACCCCCTGATTTTGGATTTGAAAGTGCCCTGGCTTTCTTAGAGGCA
TCGAAACGTGCACCTCTAGACTACATGTACAGCCATTTGGAGTAACCATG
CATCCGCCATGCATCTTAATTGCGACAACTCTCTACACCTTCATTTCTCT
GCTGGTGGATGCACACAAAAGTTGACGGGCACGGTGGAGACACCGCTCAA
ACCTTGGTCTCCGATACACAGGATGCAACCCGACGGTCTAACGCACTGAA
CGATTATTTGACACGAGGTTCCAAGCAACCACAACATGCATCGTGCGTCC
CACACGCACAACGGCCATGGATACTTCGACGTTCGCGCTTTCTGCTCCAG
ATGTGGTCAGGCAACGTGTTTACAGCGGTAGTTTAACCCCGGCCGACCAA
CATCAATACTGCTGTGGAACCTACTCCTGGAACGATACGGACGTATCGGC
CCGCAGGAAAATTCTTCGTAGATCTGTGCACAGCTTATTTTGGGGGGGGA
GGGATAGATGGGGGTTTAGGTTTTAAACTAAATCCTGTGTAGACACAATA
CCCTTCAAATATGTTCAGTCAAGCAAATTCCCTCTGGAATAGCCCCAAAT
ACGACCGTAATAACAACAACAACAACAACAACAACAACACACACACACAC
ACACACACACGAAAGTCTTTTCATTGGTCAGCCGGTAAGCGCGGTCGATG
CTAATAATAAAAACACACACGAAAGCAGGTACTGCCTCTCAGCGCTCAAC
ACCGTGCTCGTCACGGGAGACGCCGCCAGCCCGGAGGCCTGCCTCTCCGG
GGAGGACGCCACCTGCCCCACGGGCTCGACGCTCAGAGACCTGGACCTGC
CCACCGTCCAGCAGGAGGTGGCCACCTCCCTCCTGGTCGCGGGGGCCTGG
CTGGGGTCCATGATGGCGAGCAGGCCGTCGGATGCGCTCGGCCGCCGGTA
GGTGTCGGCGGGGTAATGCTGTATGGAGGGAGCCGTTGGTCGCCGTGGAC
AGCAAAGCGGCGACCCTCTCACAAAGAAATGTCAATGTCTGGTGCACGGA
AAAAGCCGAGCCTGAGATTAATTTCCACGTGGGGTAAGGAGCGCTATCGT
TCATCGGCCACGAGTGCTCTTCAAAATGCTACTATTCGTAGCTATATACT
TGAAGTATGTAAATAGTTGGTGGCCGATCTTCTCGCACAGTAGCATGTTC
CCCTTTATGAAGAGGGCCAGCTTAGAACTCGGTGCCCGTACTTTATGAAG
GTGTCTCTTTTCTCTGGGTTTCGAATTGGAGACAGGTCTCTTGAACAGGC
CGTCTTTTTGAGCCCTGGATGGGGAGTTCGTACTACCGCCGACTTCTGGC
ATGATACAGCTCCATGCCTACCCCAGAGCATGCTTCCTGTAGACGTGACG
CTCAAGATCAGTGTTCGAGAGACCGCGGCATGAATGATAGTGAGGATCGC
CCCGCATACAACTACCTGGTGCCCTGTCGGCCAGTGCAGGAATTATCCCT
GGGGCCGTTCTGTTTTCCGCACCCCGGCTGTGTGTATATTTTCGCTCGAA
GCTATCTGTCACAAGCTAAACTACCGCCTCATTTTCGGTCGCGGTGCATC
TTCGGCGTTCTTCACCCCTCCGATGTCTCTGATGATCTCCGGAGAACAGG
GCGACGCTGCTGTACAACAACGCCCTGTTCATCGCGGGCGGCTTGTTGTG
CGCCGTGGCTGTGGGGTCTTCGGAACTGTTCGTCGGAAGGTTCCTGGCAG
GGATGGGTGTCGGGTGAGTGGTGAATAGACCCACGAGTTCTGCCGGAGCC
CCTTTGCGTTATGGTAGCCTTGCTGGTCTTTTTTTTTTTCTTAAATGCTT
CGTTTATGCTGTTGTGGTACATGATTGCGTCTCTGAAGCAAGTTCTGGCG
TTCTTCGAGGGCACGGCTGTAGCCTTGAATGTTGTTTTTTTGCGGTCGTT
AGGGTTGACCGGAGTAGCGGTGAGCTACACTGCCCCCCTCATCGTGTCGT
TCCCTTTGTTCACCCTTGAAATGGCCTCAAGCCCCGGTCCTCCCTCGGAC
GCCCTATGTCAGGCGATGTAATGGTGCCTCCGCTTAGGCATGTCCCGGAC
ATCCTTTTGGTGTCTGAGAGGAGGCAAGAAAACGCTGAAAACGCACGCCT
GTTCATTGGTCGTGTTCACTGAAAACGGTTGACCCAGAACTTTCGCTTTT
CTCTTGTTCTTTTCATGTCGTGTTGCCTATCTATCTACGCGTGCGGCTTC
GTTTTTCGTCTTCTCTATTTTGTTTTTTTTCATGTCTGCTTTGTCGTATC
TAAACGCGTGCGTGGCCGCGGCCGGAAGTTGTGGTTCCGGCGTGGTGCCC
GTCCTCCTCTCCGAGGTGTCCTCCCCGAAGAACCGAGGGGCCGTCGGCTC
GATCCACCAGCTCATGATCAACCTCGGCATCCTGTCGTCCGGGCTCCTGG
GATACGCGCTCGTCGAGGACGTGTCGCATGGCTGGAGATATGTGCAAGGG
TTCATCGTCGTCCCCGCCGCAGTACAGGTGCATCCACAACACCACACACT
CCACGACTGCCTTGTTGAATAGTTGCAAACATGGGTGTGCTGTGAAGCAG
CTTATTTTTGTTGGCGCCACATGTGTACCCCATATTAAGCTCACGTTGGT
GGCCTTTTTTGTTCGGATATTGGGTGATTTGACGCGCGCGTCTTGTCTGA
AATTTTCGCATTTCGTTCCAAGTATTGCATGAAATCTTGCCCGCAGTTGG
TGAAATAGGCCAGGCGCGGTGTACTGCTTGGAGGATTTGTTCCTGTCGCT
CACGTTGACCCGTTTCGCTTCGGATCGGTCGCGCACGCTACAGTTCACCA
CCCGTCCAGCTTCGTCACACGCGCACTGTGTAGGGGTGTCTTGGTAGCCC
TTGTCCCGGTTAAGGTTGGCCTTTCGGATCGGCAACATTTCCGTCCATCG
ATCCATGAACAAATCATGCGTGCTAGTTTGGAGTCTTGGCAGCCACCCGC
GACGCCTTCGGGTACTCTACTTACACAACTATTTTGTTTTGGGGGTTCGA
CGAAGCAGTAGTCACATATCATGACCACTCGTGCCTCTATATTTTTGTCC
CGAATGCCATCAGCTTCGATCAGACCGTTCTGTACCTGTTTCGGTGCATT
CTTTGGGACGGAAAAGCTGGGAGCGGAGGAATTTACTCGATCGTCCTGAC
GTTCGACCACAACACATTCCTTGCACGCCCTTCTATTCTTACACGTGGGA
CGCGGATGAGATGTTCTGACAATGTTGATCCTGCCTCCCCCCTCCCTCTA
GCCTCCTTTCCGACATAAAATCGTTTTCCGTCTCAGCTCGCGCTCGCGGG
ACTCGTGCCGGAGTCGGCGCGGTGGCTGGTGAAGCAAGGAAGAATTGCCG
ANNNNNNNNNNNNNNNNNNNNNNNNNN
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Coding sequence (CDS) from alignment at Scaffold_235:109646..113672-

>EsuBft321_9a-0001 ID=EsuBft321_9a-0001|Name=EsuBft321_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=663bp|location=Sequence derived from alignment at Scaffold_235:109646..113672- (Ectocarpus subulatus male Bft15b)
ATGCAGCAGCACCATCGGCCCTCCGCAGTGTCACGCAGGATGTGGGCCTC
GAGCCTCATCAGCGCCCTACCCAGCTTCTTATTCGGGTACTGCCTCTCAG
CGCTCAACACCGTGCTCGTCACGGGAGACGCCGCCAGCCCGGAGGCCTGC
CTCTCCGGGGAGGACGCCACCTGCCCCACGGGCTCGACGCTCAGAGACCT
GGACCTGCCCACCGTCCAGCAGGAGGTGGCCACCTCCCTCCTGGTCGCGG
GGGCCTGGCTGGGGTCCATGATGGCGAGCAGGCCGTCGGATGCGCTCGGC
CGCCGGGCGACGCTGCTGTACAACAACGCCCTGTTCATCGCGGGCGGCTT
GTTGTGCGCCGTGGCTGTGGGGTCTTCGGAACTGTTCGTCGGAAGGTTCC
TGGCAGGGATGGGTGTCGGTTGTGGTTCCGGCGTGGTGCCCGTCCTCCTC
TCCGAGGTGTCCTCCCCGAAGAACCGAGGGGCCGTCGGCTCGATCCACCA
GCTCATGATCAACCTCGGCATCCTGTCGTCCGGGCTCCTGGGATACGCGC
TCGTCGAGGACGTGTCGCATGGCTGGAGATATGTGCAAGGGTTCATCGTC
GTCCCCGCCGCAGTACAGGTGCATCCACAACACCACACACTCCACGACTG
CCTTGTTGAATAG
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