EsuBft359_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft359_8a-0001
Unique NameEsuBft359_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_233contigScaffold_233:274503..278347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FK87
ProteomeIdEsuBft359_8
Protein domainsIPR002547
Protein domainsIPR012340
Protein domainsPTHR11586
Ownerapollo_admin@sb-roscoff.fr
Noteprobable methionine--trna ligase os:oryza sativa japonica gn:os06g0508700 pe:2 sv:2 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length1170
Hectar predicted targeting categoryother localisation
Evalue1.17e-107
EggNOG OGsCOG0143@1|root,KOG2241@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameYARS
KEGG rclassRC00055,RC00523
KEGG koko:K01866
KEGG ReactionR02918
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0000049,GO:0001664,GO:0002682,GO:0002685,GO:0002688,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004812,GO:0004831,GO:0005102,GO:0005126,GO:0005153,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006437,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0006915,GO:0006935,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008219,GO:0009058,GO:0009059,GO:0009605,GO:0009966,GO:0009987,GO:0010467,GO:0010469,GO:0010646,GO:0010758,GO:0012501,GO:0016070,GO:0016604,GO:0016874,GO:0016875,GO:0017101,GO:0017102,GO:0019538,GO:0019752,GO:0023051,GO:0030334,GO:0030545,GO:0031974,GO:0031981,GO:0032101,GO:0032879,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034660,GO:0040011,GO:0040012,GO:0042056,GO:0042221,GO:0042330,GO:0042379,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045236,GO:0046483,GO:0048018,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0050918,GO:0050920,GO:0051270,GO:0051716,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0098772,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1905521,GO:2000145
EC6.1.1.1
DescriptiontRNA binding
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029
Cross References
External references for this mRNA
DatabaseAccession
GO0005153
GO0006915
GO0004871
GO0000166
GO0005622
GO0006437
GO0004831
GO0000049
EC6.1.1.1
GO0005515
GO0005615
GO0046686
GO0005829
GO0007165
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft359_8aEsuBft359_8aEctocarpus subulatus male Bft15bgeneScaffold_233 274503..278347 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft359_8a-0001EsuBft359_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_233 276175..278117 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft359_8a-0001-exonEsuBft359_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_233 274503..274745 +
EsuBft359_8a-0001-exonagat-exon-31449Ectocarpus subulatus male Bft15bexonScaffold_233 275483..275645 +
EsuBft359_8a-0001-exonagat-exon-31451Ectocarpus subulatus male Bft15bexonScaffold_233 276151..276290 +
EsuBft359_8a-0001-exonagat-exon-31450Ectocarpus subulatus male Bft15bexonScaffold_233 276903..277052 +
EsuBft359_8a-0001-exonagat-exon-31448Ectocarpus subulatus male Bft15bexonScaffold_233 277874..278347 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft359_8a-0001-exonagat-five_prime_utr-8811Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_233 274503..274745 +
EsuBft359_8a-0001-exonagat-five_prime_utr-8812Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_233 275483..275645 +
EsuBft359_8a-0001-exonagat-five_prime_utr-8813Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_233 276151..276174 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft359_8a-0001-cdsEsuBft359_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_233 276175..276290 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft359_8a-0001-exonagat-three_prime_utr-13892Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_233 278118..278347 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft359_8a-0001 ID=EsuBft359_8a-0001|Name=EsuBft359_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1170bp|location=Sequence derived from alignment at Scaffold_233:274503..278347+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTTGTCGCCGCCCCGCTCGCGTCCGGCGGTGCCGCGTCTGGCCGAAACAC
TCTTCCTACCACTGCCGGTACCGCTGCCGCTGCCTCGAAGGCCAGTGCTG
ATGCTGCTGCTGCGCCTCCGGTGGTATCGGCGTCAGTTGTTTCGGCGAGA
GAGGCCGTCGTGGAGCTGCCTCCCCTCGGCGGTGATGGGGTAGGGTATTC
CGTGAAGTGGTTCGAAGAGGACAACCCCGAAATCTTCGATCAGGCGACGG
CCTCGCTGCAATCCAGGCTAGTTTTGTCGGACCTCTCTCCCGGAACAGAG
TACGTGGCGGTGGTGAGAAAAACAGCGACGGCAGCAGCAGCAGCGGCAGC
GGGGGAGGCGGGCGACAACGACGCGAGGGAACTCCGCTTCTCCACACCAC
AGGCGAGCCGAGGGAAACGCCTCCGGTGAGATGATGGAACTCTCCCGTCT
GGAGATTAGGGTGGGGCGTTGCCTGGAGTGCTCCAAGCACCCTGACGCGG
ACTCTCTGTACGTCGAGACGATCGACTTCGGCGAGGGAGAGCCAAGGACG
ATCGTGTCCGGGCTTGTGGCGTATGTTCCGGAAGACGAGATGCGAGGGAG
GATGGTGGTGGGGCTTTGCAACCTCCCCTCCCGGGCCATGCGCGGCGTGA
CGTCATCCGGGATGCTACTGTGCGCCAGCAACGACGATCACTCGAGCGTG
GACCCCCTGTCGCCCCCAGAGGGAGCCAAGATCGGGGAGCTCATCACCTT
CGAAGGCGTTCTTTCTGCCCCCGCGCCTCCGAGCAGCGGCGCCTCTAGGG
CTTGGTCCGCGACGAGGGAGGGTATGAAGACTGCGGAGGCGACGGCGGAC
GGTGTTGGTGTCGCGGGCTGGGACGGTCGCCCCATGCTAACGTCGGCAGG
GGCTTGCACGTCCTCTATTGCCGCGGGGCGCGTGCGATGATGATAGTGAT
ACTGCTGGCGTGCGTGATAGTTCTGTTTTGGGGCTCGCCGTTTTTTTTTG
TTTTAAGTTTGCTTTTTTTTTGTTCACCGCTGGAAGGAAAAACGGCGGAA
CTCGTTTTTTGTTGCGCTTCTGTTGTCATGGCCGATTTGCTCTTGCAGGT
GGGGTAATTTGAGCTTTGAAGTATGAATGGGACTACGCTTTGCATCAAGC
ACCGTGGAGGATTGACTCTT
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protein sequence of EsuBft359_8a-0001

>EsuBft359_8 ID=EsuBft359_8|Name=EsuBft359_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=169bp
MMELSRLEIRVGRCLECSKHPDADSLYVETIDFGEGEPRTIVSGLVAYVP
EDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAK
IGELITFEGVLSAPAPPSSGASRAWSATREGMKTAEATADGVGVAGWDGR
PMLTSAGACTSSIAAGRVR
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mRNA from alignment at Scaffold_233:274503..278347+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft359_8a-0001 ID=EsuBft359_8a-0001|Name=EsuBft359_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3845bp|location=Sequence derived from alignment at Scaffold_233:274503..278347+ (Ectocarpus subulatus male Bft15b)
TTTGTCGCCGCCCCGCTCGCGTCCGGCGGTGCCGCGTCTGGCCGAAACAC
TCTTCCTACCACTGCCGGTACCGCTGCCGCTGCCTCGAAGGCCAGTGCTG
ATGCTGCTGCTGCGCCTCCGGTGGTATCGGCGTCAGTTGTTTCGGCGAGA
GAGGCCGTCGTGGAGCTGCCTCCCCTCGGCGGTGATGGGGTAGGGTATTC
CGTGAAGTGGTTCGAAGAGGACAACCCCGAAATCTTCGATCAGGTGTGTG
TGTGTGTTTTGCAAGCTCACCCGACCAGCAAAGACACCAGGTTCCGCGGG
AAAAAACAATCGAGACAAATCGCGGAGTCCACGCAGATTTTATATTACAA
ACCAAGCAGGTGGATGGAAGTAATGACATGGTAAGGTGGTACGTTATGTG
GGTCTCTACTGAAACTGATACCGTAAGTGGTGTCCATGCTCTGGCAAGGG
ACCGGCCTCCGCTCCATGGAAACGAGGCCAGTCACGCTCGTCCAGGTCAT
GCGAGAGAGTATTTCGTCTACTGTAGTACCTCCACCTTCATAGGCAAAGG
CCACATGTCGTTGAGACTCGCGGCGGGCTGTCTCAGATCCGTGCGGTTTC
GGGATACGTCGTGCACGGCACTTTGTTCCACCGGTATTCCACGCCCCGGT
GGCGTGACTCTGCGAAGGACCTTACGCCAAACGATTCCGCAGAAAACGAA
GCCGTTGCACCTGGTGCTGCTGATACTGGTGCTGCTGTTATCATTTTGCT
GTTTTCATTGACCCATCTCAGTAAGTTTTCCCCGGTTGTTACAAACCAGG
CACAAGACTTCAAAAATACTATTTAGCAGAGGGGCACCACCGCCCAGCGG
GATGGAGGAGAGATGGTGAGGGGGGGGGCAGTGTTCTCGATAGGAAGAGT
AAGCTTGTGAGTGGCCGACGCCTTTCCCTCCCTCGTTTTCGTGGGCTCCC
CTGTGCGCCGTGTTTTTACGGCAAAAGCAGGCGACGGCCTCGCTGCAATC
CAGGCTAGTTTTGTCGGACCTCTCTCCCGGAACAGAGTACGTGGCGGTGG
TGAGAAAAACAGCGACGGCAGCAGCAGCAGCGGCAGCGGGGGAGGCGGGC
GACAACGACGCGAGGGAACTCCGCTTCTCCACACCACAGGCGAGTCGGCT
TTACGAGCACACGTAGGCGAGGGTGTAGAGTGGCTGGTATCCTGCGTGTT
GCGGCGGATAGGCACAAGTGTTCGGGTGGCCACGCCAACAGCGGCGGTAG
CCTGAGCTAGGTACGGCTTTATTTTCGGTGAGGTAGTGGGGCATGGTGGT
GGTGACAACTGGGGGAAAGGCGTCTGCGGCGCATGGGAGGTTTGCAGGTA
TCTCCGCCCGCCTAAACCATAACCGAAAAAAACCTGTGGATGACTGTACT
CGTGATGTCCCGCATGCCTGCGACCAATGATTGGCACCCAATAGCGGGCT
TGGCCCGAGAGATGGTGTTGCTTCGCAGTCTAGTTTTCAGTCACATTCAC
TGTCAGTCTAGTTTTCAATGTTGCCACTACAATAGCAGCCAGCTCAAGTG
TAGATCAGCCGGCTTCGGGTTCTTCAAGACGTCATGATGGATAAACTTTC
GATATTCCCTCGCCCTCTTGCGCGCGCTCTCCCTCCCAACCGCGATAGGC
CGAGGGAAACGCCTCCGGTGAGATGATGGAACTCTCCCGTCTGGAGATTA
GGGTGGGGCGTTGCCTGGAGTGCTCCAAGCACCCTGACGCGGACTCTCTG
TACGTCGAGACGATCGACTTCGGCGAGGGAGAGCCAAGGTAGCCGGTCTC
TCACCATTTTTCTATCGGGGGAGGGCGAGGGAGGGTCGACAGCAGCAGCG
GGGCGTATTAGGCGTGGTGACGAAACTGATGGTATGCGAGGGTTCTACGT
AGTAGTTGGGAGAATAGTCCAAGCTCTAGAGAGAGCTTGTCTCTTTTGTC
GAGAGGTGGGACCCTGCACAGCAGTAACTGCACCGACCTTTCCTTCGGGT
TTCTTCGCACCCTAGGCTTTTTCTGGTGCCGCCCTTGCCGCCAGCCGATC
GAGTAGTAGCTCTCCTTACAGCAACCGGCCTGTTACAATTTTTGCAGCGG
CCTGCTCAGGGAATTTTTTTCTCATTTCGCCAGCTGACGTCGCTCTCCTT
AGCACCCACAATATTGCACATTTTTCAAGTTGGAAGGAGTGGAACGGTGC
GGGGTCCCAACTGATGGGAAAGTTGACGAAGTCTTGTTTACGTACCCGGA
CGGGCAGCAAACGTGTATCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGTTTCCCCCCCCCCCCCCCCCACGGGATATGGTGCCGTTTGACAG
GACGATCGTGTCCGGGCTTGTGGCGTATGTTCCGGAAGACGAGATGCGAG
GGAGGATGGTGGTGGGGCTTTGCAACCTCCCCTCCCGGGCCATGCGCGGC
GTGACGTCATCCGGGATGCTACTGTGCGCCAGCAACGACGATCACTCGAG
GTGGGCCGGACTGCCCCGTGTACCGCATGGCACGTTGCTGTTGTGTGTTG
ATGCTGTCGTTGTCTCTTCACGTTCGAAACCCGTGTTTTACTGACTTCCG
CCTTCCACAGCATCCTTACCAGTGCTCAAGGTAAGAGGGGCGAAGTTCGG
TGGTCACAGCAATTAGGTTGACCCCACGGTGTATGTGGTACGAGGTCTCC
CTTCCGAAAATGGCGGGGCCTCCAAGCCTCTGAACACGTTTGCTCTTGGT
GTAGTTCAGCAACACCGGTGTTGCTGGTTCTGTAGGAGGAAAGACGTGGC
TGCAAGCTGCTTCCTTCTTGTCGGCACGTTACTATTATGCTTGTGGGGGG
GAGTGCCGTATCTCATGCGGTTTGCTCACGGTAGCGTGTACTGTCATTCT
TCGGTTGCACCACGCAGCAGTAGGATGATCGATGGTGCGCCCACCTTTTG
TGTTTCCCCTCGCTCAACTTCCTTCGTGTCTTCTTCGCTGGGACAGATTT
GAAGAGCTCGATTTTCTCCATGACCAATGCTGGACAGCAGCGCCGAACGA
TTCGCCGTCGGAATGTATCTCTAGCCGGTAGATTGTACTCCATGCATATT
AGAGCGAGTTTTCCGAGGTTTTCTTGTTTTCTCGAGATAATCGAGGATGC
AATCGGACGCCGGGTGAGGGTAAGCTTCTACGCAAACGTCGCAATATCGT
TTCTCCACCGTAAACTGAGCGCCAACTCGTTTGATTGTCCTGCGCTTCAT
TCCAACCGAGCTTGTCGACATCTATGGTTCCCCTGGTGATCCCCCCGCAT
CCCCCCCACCTCGTCCTACAGCGTGGACCCCCTGTCGCCCCCAGAGGGAG
CCAAGATCGGGGAGCTCATCACCTTCGAAGGCGTTCTTTCTGCCCCCGCG
CCTCCGAGCAGCGGCGCCTCTAGGGCTTGGTCCGCGACGAGGGAGGGTAT
GAAGACTGCGGAGGCGACGGCGGACGGTGTTGGTGTCGCGGGCTGGGACG
GTCGCCCCATGCTAACGTCGGCAGGGGCTTGCACGTCCTCTATTGCCGCG
GGGCGCGTGCGATGATGATAGTGATACTGCTGGCGTGCGTGATAGTTCTG
TTTTGGGGCTCGCCGTTTTTTTTTGTTTTAAGTTTGCTTTTTTTTTGTTC
ACCGCTGGAAGGAAAAACGGCGGAACTCGTTTTTTGTTGCGCTTCTGTTG
TCATGGCCGATTTGCTCTTGCAGGTGGGGTAATTTGAGCTTTGAAGTATG
AATGGGACTACGCTTTGCATCAAGCACCGTGGAGGATTGACTCTT
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Coding sequence (CDS) from alignment at Scaffold_233:274503..278347+

>EsuBft359_8a-0001 ID=EsuBft359_8a-0001|Name=EsuBft359_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=510bp|location=Sequence derived from alignment at Scaffold_233:274503..278347+ (Ectocarpus subulatus male Bft15b)
ATGATGGAACTCTCCCGTCTGGAGATTAGGGTGGGGCGTTGCCTGGAGTG
CTCCAAGCACCCTGACGCGGACTCTCTGTACGTCGAGACGATCGACTTCG
GCGAGGGAGAGCCAAGGACGATCGTGTCCGGGCTTGTGGCGTATGTTCCG
GAAGACGAGATGCGAGGGAGGATGGTGGTGGGGCTTTGCAACCTCCCCTC
CCGGGCCATGCGCGGCGTGACGTCATCCGGGATGCTACTGTGCGCCAGCA
ACGACGATCACTCGAGCGTGGACCCCCTGTCGCCCCCAGAGGGAGCCAAG
ATCGGGGAGCTCATCACCTTCGAAGGCGTTCTTTCTGCCCCCGCGCCTCC
GAGCAGCGGCGCCTCTAGGGCTTGGTCCGCGACGAGGGAGGGTATGAAGA
CTGCGGAGGCGACGGCGGACGGTGTTGGTGTCGCGGGCTGGGACGGTCGC
CCCATGCTAACGTCGGCAGGGGCTTGCACGTCCTCTATTGCCGCGGGGCG
CGTGCGATGA
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