EsuBft359_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Seed ortholog	2880.D7FK87
ProteomeId	EsuBft359_8
Protein domains	IPR002547
Protein domains	IPR012340
Protein domains	PTHR11586
Owner	apollo_admin@sb-roscoff.fr
Note	probable methionine--trna ligase os:oryza sativa japonica gn:os06g0508700 pe:2 sv:2 [Automatic annotation]
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	1170
Hectar predicted targeting category	other localisation
Evalue	1.17e-107
EggNOG OGs	COG0143@1\|root,KOG2241@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
Preferred name	YARS
KEGG rclass	RC00055,RC00523
KEGG ko	ko:K01866
KEGG Reaction	R02918
KEGG Pathway	ko00970,map00970
KEGG Module	M00359,M00360
GOs	GO:0000049,GO:0001664,GO:0002682,GO:0002685,GO:0002688,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004812,GO:0004831,GO:0005102,GO:0005126,GO:0005153,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006437,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0006915,GO:0006935,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008219,GO:0009058,GO:0009059,GO:0009605,GO:0009966,GO:0009987,GO:0010467,GO:0010469,GO:0010646,GO:0010758,GO:0012501,GO:0016070,GO:0016604,GO:0016874,GO:0016875,GO:0017101,GO:0017102,GO:0019538,GO:0019752,GO:0023051,GO:0030334,GO:0030545,GO:0031974,GO:0031981,GO:0032101,GO:0032879,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034660,GO:0040011,GO:0040012,GO:0042056,GO:0042221,GO:0042330,GO:0042379,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045236,GO:0046483,GO:0048018,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0050918,GO:0050920,GO:0051270,GO:0051716,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0098772,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1905521,GO:2000145
EC	6.1.1.1
Description	tRNA binding
COG category	J
BRITE	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029

Cross References

External references for this mRNA


Database	Accession
GO	0005153
GO	0006915
GO	0004871
GO	0000166
GO	0005622
GO	0006437
GO	0004831
GO	0000049
EC	6.1.1.1
GO	0005515
GO	0005615
GO	0046686
GO	0005829
GO	0007165

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_233:274503..278347+
coding sequence from alignment at Scaffold_233:274503..278347+

spliced messenger RNA

>EsuBft359_8a-0001 ID=EsuBft359_8a-0001|Name=EsuBft359_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1170bp|location=Sequence derived from alignment at Scaffold_233:274503..278347+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTTGTCGCCGCCCCGCTCGCGTCCGGCGGTGCCGCGTCTGGCCGAAACAC
TCTTCCTACCACTGCCGGTACCGCTGCCGCTGCCTCGAAGGCCAGTGCTG
ATGCTGCTGCTGCGCCTCCGGTGGTATCGGCGTCAGTTGTTTCGGCGAGA
GAGGCCGTCGTGGAGCTGCCTCCCCTCGGCGGTGATGGGGTAGGGTATTC
CGTGAAGTGGTTCGAAGAGGACAACCCCGAAATCTTCGATCAGGCGACGG
CCTCGCTGCAATCCAGGCTAGTTTTGTCGGACCTCTCTCCCGGAACAGAG
TACGTGGCGGTGGTGAGAAAAACAGCGACGGCAGCAGCAGCAGCGGCAGC
GGGGGAGGCGGGCGACAACGACGCGAGGGAACTCCGCTTCTCCACACCAC
AGGCGAGCCGAGGGAAACGCCTCCGGTGAGATGATGGAACTCTCCCGTCT
GGAGATTAGGGTGGGGCGTTGCCTGGAGTGCTCCAAGCACCCTGACGCGG
ACTCTCTGTACGTCGAGACGATCGACTTCGGCGAGGGAGAGCCAAGGACG
ATCGTGTCCGGGCTTGTGGCGTATGTTCCGGAAGACGAGATGCGAGGGAG
GATGGTGGTGGGGCTTTGCAACCTCCCCTCCCGGGCCATGCGCGGCGTGA
CGTCATCCGGGATGCTACTGTGCGCCAGCAACGACGATCACTCGAGCGTG
GACCCCCTGTCGCCCCCAGAGGGAGCCAAGATCGGGGAGCTCATCACCTT
CGAAGGCGTTCTTTCTGCCCCCGCGCCTCCGAGCAGCGGCGCCTCTAGGG
CTTGGTCCGCGACGAGGGAGGGTATGAAGACTGCGGAGGCGACGGCGGAC
GGTGTTGGTGTCGCGGGCTGGGACGGTCGCCCCATGCTAACGTCGGCAGG
GGCTTGCACGTCCTCTATTGCCGCGGGGCGCGTGCGATGATGATAGTGAT
ACTGCTGGCGTGCGTGATAGTTCTGTTTTGGGGCTCGCCGTTTTTTTTTG
TTTTAAGTTTGCTTTTTTTTTGTTCACCGCTGGAAGGAAAAACGGCGGAA
CTCGTTTTTTGTTGCGCTTCTGTTGTCATGGCCGATTTGCTCTTGCAGGT
GGGGTAATTTGAGCTTTGAAGTATGAATGGGACTACGCTTTGCATCAAGC
ACCGTGGAGGATTGACTCTT

protein sequence of EsuBft359_8a-0001

>EsuBft359_8 ID=EsuBft359_8|Name=EsuBft359_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=169bp
MMELSRLEIRVGRCLECSKHPDADSLYVETIDFGEGEPRTIVSGLVAYVP
EDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAK
IGELITFEGVLSAPAPPSSGASRAWSATREGMKTAEATADGVGVAGWDGR
PMLTSAGACTSSIAAGRVR

mRNA from alignment at Scaffold_233:274503..278347+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft359_8a-0001 ID=EsuBft359_8a-0001|Name=EsuBft359_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3845bp|location=Sequence derived from alignment at Scaffold_233:274503..278347+ (Ectocarpus subulatus male Bft15b)
TTTGTCGCCGCCCCGCTCGCGTCCGGCGGTGCCGCGTCTGGCCGAAACAC
TCTTCCTACCACTGCCGGTACCGCTGCCGCTGCCTCGAAGGCCAGTGCTG
ATGCTGCTGCTGCGCCTCCGGTGGTATCGGCGTCAGTTGTTTCGGCGAGA
GAGGCCGTCGTGGAGCTGCCTCCCCTCGGCGGTGATGGGGTAGGGTATTC
CGTGAAGTGGTTCGAAGAGGACAACCCCGAAATCTTCGATCAGGTGTGTG
TGTGTGTTTTGCAAGCTCACCCGACCAGCAAAGACACCAGGTTCCGCGGG
AAAAAACAATCGAGACAAATCGCGGAGTCCACGCAGATTTTATATTACAA
ACCAAGCAGGTGGATGGAAGTAATGACATGGTAAGGTGGTACGTTATGTG
GGTCTCTACTGAAACTGATACCGTAAGTGGTGTCCATGCTCTGGCAAGGG
ACCGGCCTCCGCTCCATGGAAACGAGGCCAGTCACGCTCGTCCAGGTCAT
GCGAGAGAGTATTTCGTCTACTGTAGTACCTCCACCTTCATAGGCAAAGG
CCACATGTCGTTGAGACTCGCGGCGGGCTGTCTCAGATCCGTGCGGTTTC
GGGATACGTCGTGCACGGCACTTTGTTCCACCGGTATTCCACGCCCCGGT
GGCGTGACTCTGCGAAGGACCTTACGCCAAACGATTCCGCAGAAAACGAA
GCCGTTGCACCTGGTGCTGCTGATACTGGTGCTGCTGTTATCATTTTGCT
GTTTTCATTGACCCATCTCAGTAAGTTTTCCCCGGTTGTTACAAACCAGG
CACAAGACTTCAAAAATACTATTTAGCAGAGGGGCACCACCGCCCAGCGG
GATGGAGGAGAGATGGTGAGGGGGGGGGCAGTGTTCTCGATAGGAAGAGT
AAGCTTGTGAGTGGCCGACGCCTTTCCCTCCCTCGTTTTCGTGGGCTCCC
CTGTGCGCCGTGTTTTTACGGCAAAAGCAGGCGACGGCCTCGCTGCAATC
CAGGCTAGTTTTGTCGGACCTCTCTCCCGGAACAGAGTACGTGGCGGTGG
TGAGAAAAACAGCGACGGCAGCAGCAGCAGCGGCAGCGGGGGAGGCGGGC
GACAACGACGCGAGGGAACTCCGCTTCTCCACACCACAGGCGAGTCGGCT
TTACGAGCACACGTAGGCGAGGGTGTAGAGTGGCTGGTATCCTGCGTGTT
GCGGCGGATAGGCACAAGTGTTCGGGTGGCCACGCCAACAGCGGCGGTAG
CCTGAGCTAGGTACGGCTTTATTTTCGGTGAGGTAGTGGGGCATGGTGGT
GGTGACAACTGGGGGAAAGGCGTCTGCGGCGCATGGGAGGTTTGCAGGTA
TCTCCGCCCGCCTAAACCATAACCGAAAAAAACCTGTGGATGACTGTACT
CGTGATGTCCCGCATGCCTGCGACCAATGATTGGCACCCAATAGCGGGCT
TGGCCCGAGAGATGGTGTTGCTTCGCAGTCTAGTTTTCAGTCACATTCAC
TGTCAGTCTAGTTTTCAATGTTGCCACTACAATAGCAGCCAGCTCAAGTG
TAGATCAGCCGGCTTCGGGTTCTTCAAGACGTCATGATGGATAAACTTTC
GATATTCCCTCGCCCTCTTGCGCGCGCTCTCCCTCCCAACCGCGATAGGC
CGAGGGAAACGCCTCCGGTGAGATGATGGAACTCTCCCGTCTGGAGATTA
GGGTGGGGCGTTGCCTGGAGTGCTCCAAGCACCCTGACGCGGACTCTCTG
TACGTCGAGACGATCGACTTCGGCGAGGGAGAGCCAAGGTAGCCGGTCTC
TCACCATTTTTCTATCGGGGGAGGGCGAGGGAGGGTCGACAGCAGCAGCG
GGGCGTATTAGGCGTGGTGACGAAACTGATGGTATGCGAGGGTTCTACGT
AGTAGTTGGGAGAATAGTCCAAGCTCTAGAGAGAGCTTGTCTCTTTTGTC
GAGAGGTGGGACCCTGCACAGCAGTAACTGCACCGACCTTTCCTTCGGGT
TTCTTCGCACCCTAGGCTTTTTCTGGTGCCGCCCTTGCCGCCAGCCGATC
GAGTAGTAGCTCTCCTTACAGCAACCGGCCTGTTACAATTTTTGCAGCGG
CCTGCTCAGGGAATTTTTTTCTCATTTCGCCAGCTGACGTCGCTCTCCTT
AGCACCCACAATATTGCACATTTTTCAAGTTGGAAGGAGTGGAACGGTGC
GGGGTCCCAACTGATGGGAAAGTTGACGAAGTCTTGTTTACGTACCCGGA
CGGGCAGCAAACGTGTATCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGTTTCCCCCCCCCCCCCCCCCACGGGATATGGTGCCGTTTGACAG
GACGATCGTGTCCGGGCTTGTGGCGTATGTTCCGGAAGACGAGATGCGAG
GGAGGATGGTGGTGGGGCTTTGCAACCTCCCCTCCCGGGCCATGCGCGGC
GTGACGTCATCCGGGATGCTACTGTGCGCCAGCAACGACGATCACTCGAG
GTGGGCCGGACTGCCCCGTGTACCGCATGGCACGTTGCTGTTGTGTGTTG
ATGCTGTCGTTGTCTCTTCACGTTCGAAACCCGTGTTTTACTGACTTCCG
CCTTCCACAGCATCCTTACCAGTGCTCAAGGTAAGAGGGGCGAAGTTCGG
TGGTCACAGCAATTAGGTTGACCCCACGGTGTATGTGGTACGAGGTCTCC
CTTCCGAAAATGGCGGGGCCTCCAAGCCTCTGAACACGTTTGCTCTTGGT
GTAGTTCAGCAACACCGGTGTTGCTGGTTCTGTAGGAGGAAAGACGTGGC
TGCAAGCTGCTTCCTTCTTGTCGGCACGTTACTATTATGCTTGTGGGGGG
GAGTGCCGTATCTCATGCGGTTTGCTCACGGTAGCGTGTACTGTCATTCT
TCGGTTGCACCACGCAGCAGTAGGATGATCGATGGTGCGCCCACCTTTTG
TGTTTCCCCTCGCTCAACTTCCTTCGTGTCTTCTTCGCTGGGACAGATTT
GAAGAGCTCGATTTTCTCCATGACCAATGCTGGACAGCAGCGCCGAACGA
TTCGCCGTCGGAATGTATCTCTAGCCGGTAGATTGTACTCCATGCATATT
AGAGCGAGTTTTCCGAGGTTTTCTTGTTTTCTCGAGATAATCGAGGATGC
AATCGGACGCCGGGTGAGGGTAAGCTTCTACGCAAACGTCGCAATATCGT
TTCTCCACCGTAAACTGAGCGCCAACTCGTTTGATTGTCCTGCGCTTCAT
TCCAACCGAGCTTGTCGACATCTATGGTTCCCCTGGTGATCCCCCCGCAT
CCCCCCCACCTCGTCCTACAGCGTGGACCCCCTGTCGCCCCCAGAGGGAG
CCAAGATCGGGGAGCTCATCACCTTCGAAGGCGTTCTTTCTGCCCCCGCG
CCTCCGAGCAGCGGCGCCTCTAGGGCTTGGTCCGCGACGAGGGAGGGTAT
GAAGACTGCGGAGGCGACGGCGGACGGTGTTGGTGTCGCGGGCTGGGACG
GTCGCCCCATGCTAACGTCGGCAGGGGCTTGCACGTCCTCTATTGCCGCG
GGGCGCGTGCGATGATGATAGTGATACTGCTGGCGTGCGTGATAGTTCTG
TTTTGGGGCTCGCCGTTTTTTTTTGTTTTAAGTTTGCTTTTTTTTTGTTC
ACCGCTGGAAGGAAAAACGGCGGAACTCGTTTTTTGTTGCGCTTCTGTTG
TCATGGCCGATTTGCTCTTGCAGGTGGGGTAATTTGAGCTTTGAAGTATG
AATGGGACTACGCTTTGCATCAAGCACCGTGGAGGATTGACTCTT

Coding sequence (CDS) from alignment at Scaffold_233:274503..278347+

>EsuBft359_8a-0001 ID=EsuBft359_8a-0001|Name=EsuBft359_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=510bp|location=Sequence derived from alignment at Scaffold_233:274503..278347+ (Ectocarpus subulatus male Bft15b)
ATGATGGAACTCTCCCGTCTGGAGATTAGGGTGGGGCGTTGCCTGGAGTG
CTCCAAGCACCCTGACGCGGACTCTCTGTACGTCGAGACGATCGACTTCG
GCGAGGGAGAGCCAAGGACGATCGTGTCCGGGCTTGTGGCGTATGTTCCG
GAAGACGAGATGCGAGGGAGGATGGTGGTGGGGCTTTGCAACCTCCCCTC
CCGGGCCATGCGCGGCGTGACGTCATCCGGGATGCTACTGTGCGCCAGCA
ACGACGATCACTCGAGCGTGGACCCCCTGTCGCCCCCAGAGGGAGCCAAG
ATCGGGGAGCTCATCACCTTCGAAGGCGTTCTTTCTGCCCCCGCGCCTCC
GAGCAGCGGCGCCTCTAGGGCTTGGTCCGCGACGAGGGAGGGTATGAAGA
CTGCGGAGGCGACGGCGGACGGTGTTGGTGTCGCGGGCTGGGACGGTCGC
CCCATGCTAACGTCGGCAGGGGCTTGCACGTCCTCTATTGCCGCGGGGCG
CGTGCGATGA