EsuBft748_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft748_10a-0001
Unique NameEsuBft748_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_230contigScaffold_230:462813..463634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft748_10
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length76
Hectar predicted targeting categorysignal peptide
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft748_10aEsuBft748_10aEctocarpus subulatus male Bft15bgeneScaffold_230 462813..463634 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft748_10a-0001-exonEsuBft748_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_230 462813..462897 +
EsuBft748_10a-0001-exonagat-exon-61370Ectocarpus subulatus male Bft15bexonScaffold_230 462951..463634 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft748_10a-0001-cdsEsuBft748_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_230 462813..462897 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft748_10a-0001-exonagat-three_prime_utr-20998Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_230 462989..463634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft748_10a-0001EsuBft748_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_230 462813..462988 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft748_10a-0001 ID=EsuBft748_10a-0001|Name=EsuBft748_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=769bp|location=Sequence derived from alignment at Scaffold_230:462813..463634+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCGTTCATCGCAGCCTTCCTGCTACGAGCTATTGACAGCGTGGT
TTCCTGCTCCATCATTGCCGCGGTATTGGACAAGTGCACTTTCCCTTCGA
TCGAACAACTCGGGCGGCGGTAGCCACTGACCGTTCTTGTAGGATAGCAG
GTTTAGGAACCTGTCGTAAGAGAGTGATGCAAACTTTACTGCTGTTGAAG
GACGGCACACACTTGATAGAATGGCGGACCACAAGAAATTTTCCGTCTTG
CTATAATTGGGAGGGTTGTTCGCCAAGGAGTTTGTTCGACGGAGCTGCCG
AGTACAGTGGTGAGAGCAGCTCAGTTTTGCTCCGTGACATATGTTTCCAT
ATCCACTAGTCGCTCGGTGTGATAAGTATTTACTGCACACATGCATACAA
CACACGCGTGTCTCGTTCTCATCCAGAAACACTAGTCTCATGTGTGGCCT
GCCTGCTATTATGTGATCCCGGTTGGGGCGTCCAACGGCGTTCTGAGTGG
TGAAAAATAGACGTCTGGAGTACACAAGATGACAACACACACAACCTGTG
CACGGAGTAGAACCGCTCCGCGGGGCGTTTTTTTCTTAACCCTTTTGGGT
CTACAGGCGTCCTGAATGATCATTGATTGATCACTTGCAAATGATGGTGT
TGTGGCATGCCATGGAGTTGTTGCCCTGTATCCCTCCACGCCAGGTGTTG
GGAAGTCAATAGGTAGGTGTGTCTTTATTATTCGCATCGACCGCGCTACC
CGGTGACCAATACAATGAC
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protein sequence of EsuBft748_10a-0001

>EsuBft748_10 ID=EsuBft748_10|Name=EsuBft748_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=40bp
MVAFIAAFLLRAIDSVVSCSIIAAVLDKCTFPSIEQLGRR
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mRNA from alignment at Scaffold_230:462813..463634+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft748_10a-0001 ID=EsuBft748_10a-0001|Name=EsuBft748_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=822bp|location=Sequence derived from alignment at Scaffold_230:462813..463634+ (Ectocarpus subulatus male Bft15b)
ATGGTTGCGTTCATCGCAGCCTTCCTGCTACGAGCTATTGACAGCGTGGT
TTCCTGCTCCATCATTGCCGCGGTATTGGACAAGTGTAAGTTCTGCCTCC
CGGGACCAAACGACCGGTGAGTGCAACTACAGTTGCAGGCACTTTCCCTT
CGATCGAACAACTCGGGCGGCGGTAGCCACTGACCGTTCTTGTAGGATAG
CAGGTTTAGGAACCTGTCGTAAGAGAGTGATGCAAACTTTACTGCTGTTG
AAGGACGGCACACACTTGATAGAATGGCGGACCACAAGAAATTTTCCGTC
TTGCTATAATTGGGAGGGTTGTTCGCCAAGGAGTTTGTTCGACGGAGCTG
CCGAGTACAGTGGTGAGAGCAGCTCAGTTTTGCTCCGTGACATATGTTTC
CATATCCACTAGTCGCTCGGTGTGATAAGTATTTACTGCACACATGCATA
CAACACACGCGTGTCTCGTTCTCATCCAGAAACACTAGTCTCATGTGTGG
CCTGCCTGCTATTATGTGATCCCGGTTGGGGCGTCCAACGGCGTTCTGAG
TGGTGAAAAATAGACGTCTGGAGTACACAAGATGACAACACACACAACCT
GTGCACGGAGTAGAACCGCTCCGCGGGGCGTTTTTTTCTTAACCCTTTTG
GGTCTACAGGCGTCCTGAATGATCATTGATTGATCACTTGCAAATGATGG
TGTTGTGGCATGCCATGGAGTTGTTGCCCTGTATCCCTCCACGCCAGGTG
TTGGGAAGTCAATAGGTAGGTGTGTCTTTATTATTCGCATCGACCGCGCT
ACCCGGTGACCAATACAATGAC
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Coding sequence (CDS) from alignment at Scaffold_230:462813..463634+

>EsuBft748_10a-0001 ID=EsuBft748_10a-0001|Name=EsuBft748_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=123bp|location=Sequence derived from alignment at Scaffold_230:462813..463634+ (Ectocarpus subulatus male Bft15b)
ATGGTTGCGTTCATCGCAGCCTTCCTGCTACGAGCTATTGACAGCGTGGT
TTCCTGCTCCATCATTGCCGCGGTATTGGACAAGTGCACTTTCCCTTCGA
TCGAACAACTCGGGCGGCGGTAG
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