EsuBft811_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft811_6a-0001
Unique NameEsuBft811_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_230contigScaffold_230:310775..314020 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FT55
ProteomeIdEsuBft811_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon8
Max annot lvl2759|Eukaryota
Length133
Hectar predicted targeting categoryother localisation
Evalue5.16e-207
EggNOG OGs2E0FN@1|root,2S7W7@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft811_6aEsuBft811_6aEctocarpus subulatus male Bft15bgeneScaffold_230 310775..314020 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft811_6a-0001EsuBft811_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_230 310775..314020 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft811_6a-0001-exonagat-exon-27535Ectocarpus subulatus male Bft15bexonScaffold_230 310775..311111 -
EsuBft811_6a-0001-exonagat-exon-27536Ectocarpus subulatus male Bft15bexonScaffold_230 311371..311613 -
EsuBft811_6a-0001-exonagat-exon-27538Ectocarpus subulatus male Bft15bexonScaffold_230 311725..312000 -
EsuBft811_6a-0001-exonagat-exon-27539Ectocarpus subulatus male Bft15bexonScaffold_230 312210..312278 -
EsuBft811_6a-0001-exonEsuBft811_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_230 312551..312569 -
EsuBft811_6a-0001-exonagat-exon-27540Ectocarpus subulatus male Bft15bexonScaffold_230 312864..312967 -
EsuBft811_6a-0001-exonagat-exon-27534Ectocarpus subulatus male Bft15bexonScaffold_230 313460..313638 -
EsuBft811_6a-0001-exonagat-exon-27537Ectocarpus subulatus male Bft15bexonScaffold_230 313916..314020 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft811_6a-0001-cdsEsuBft811_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_230 310775..311111 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft811_6a-0001 ID=EsuBft811_6a-0001|Name=EsuBft811_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1332bp|location=Sequence derived from alignment at Scaffold_230:310775..314020- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCGATCACGATGGGCAGCGGAACGGATGACGGGGGCGAGGAGGAA
GGGGCCGATGGAAAACCCTGATGACGGGGCGTCCTGCTCCACCTACGAGG
AGCATGTGGAAGTCGCGAAACTTCTTGATAGCACTTGTGAATGGGACCCC
TACATGTGCTGCTGGACCGGCAACGACGGAGCGGACGGGATGACGGCGAA
CTCCGACGTCTGCCGCGTACTGGACTACCCGGAAGAGGGAGACTCCTTCG
AAATGCCCCGGGAATCAGAGGGCTTCGTGTGCTGCCACGGCTTCGCCTGG
GCGGAAGGCGCGGACGTGGACACCCACATCCTGCCCCTGTACCACTACGT
GAAGAACGTCGGCCGTACCGAAGAGGCGGGCTTCTACGAGATGAAGCTGC
CGGATAGCGTGGAGGGAACGCCGGAATGCGGGTGCATCGAGGAAATACCT
TCGGTGTCCTGCTCCGAGTGCTCCAGGTACTCCTGGGAGGGGATCGCTGG
TTGCGGCAACAACGGGCTGTTAAGCCAGTACCGCGGTTGCCTGGGCGAGC
CCTGCGGCCCTATGGACGACAATCTGGTGAGGACATGCGACAACGAAGAC
ATTCCCGACTACGACCACGGGTCGTGCAGTCACAACACGTACATGTGCTG
CTTGACGGAGAACGACGGCCAGGGAATGGCAGAAAACACGGTGAGACGTC
GCGTGCCGGCCGTGGCCTCTTGCGTGGAATTTTCTTGCTACAGTGCTGAC
AGGAAGGATGTTGGGCTGACTATGTTGTCTGTTATCTTGGGTCATCTTGG
TGCCACGAAGGACGTGTGCCGTGTGTTGGACTACCCGTCGGTGGGTGGGG
CGTTGGAGTTTGCCGGCGACAGCGAGAGAGAGGCGCACCGCCACGGGTTC
GTATGGACCGAGGACGCCACCGACAAGTACATCCACCTCCTGTCGCAGTT
CGTCCAGAAGTTCGACCACAGGGACAGGAGGGGGTACTACGGAAAGTACA
TTACTGTAGGAAAAGCAGCGCACAACGTCATCATGGTGAATGGGAGAACG
ACTGGTCCAGGCGAGGACAACACGAATAACCCACTGTCTCCTCCTCCAAA
CGTTTCGCATGTCATTCTTGTCGTAACCAGTATCGAGGGCGCCCCCATGT
ACGGCTGCGTCGAAGAGATGCCGGTGGTTTCCGAGGCTGACGGCACCACC
TACGATACCGACCCGGAGCGAGAGGGCAAGTTCACGGCGTGCACGACGAA
CGACCTCTGCACCCGCTACGCGGAAGACTACCCCACGGGGGAGCTTGCCA
ACCTCGTCGGCACCTACGACAACGCGGAGTAA
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protein sequence of EsuBft811_6a-0001

>EsuBft811_6 ID=EsuBft811_6|Name=EsuBft811_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=443bp
MRRSRWAAERMTGARRKGPMENPDDGASCSTYEEHVEVAKLLDSTCEWDP
YMCCWTGNDGADGMTANSDVCRVLDYPEEGDSFEMPRESEGFVCCHGFAW
AEGADVDTHILPLYHYVKNVGRTEEAGFYEMKLPDSVEGTPECGCIEEIP
SVSCSECSRYSWEGIAGCGNNGLLSQYRGCLGEPCGPMDDNLVRTCDNED
IPDYDHGSCSHNTYMCCLTENDGQGMAENTVRRRVPAVASCVEFSCYSAD
RKDVGLTMLSVILGHLGATKDVCRVLDYPSVGGALEFAGDSEREAHRHGF
VWTEDATDKYIHLLSQFVQKFDHRDRRGYYGKYITVGKAAHNVIMVNGRT
TGPGEDNTNNPLSPPPNVSHVILVVTSIEGAPMYGCVEEMPVVSEADGTT
YDTDPEREGKFTACTTNDLCTRYAEDYPTGELANLVGTYDNAE
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mRNA from alignment at Scaffold_230:310775..314020-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft811_6a-0001 ID=EsuBft811_6a-0001|Name=EsuBft811_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3246bp|location=Sequence derived from alignment at Scaffold_230:310775..314020- (Ectocarpus subulatus male Bft15b)
ATGAGGCGATCACGATGGGCAGCGGAACGGATGACGGGGGCGAGGAGGAA
GGGGCCGATGGAAAACCCTGATGACGGGGCGTCCTGCTCCACCTACGAGG
AGCATGTGAGAACATGAAATTAACAGAAAACCGGCGCGTACAGTACGAAT
TTAAGAAGAAGAACCGAACCATTTTGCTAGTAGGGCGAAACAAGAAACAG
AAACGGCTTGAGCATACTTTGCTGGGTTACTACAGGCTCGGGTGGTGAGC
AGTATCAACCATAGAGAAGGCTATTGCATGTGTGTTTGTGTGTGTGTTTT
GAGCCTTTTTTTCATTGCATCGACCGCGCTACCCAGCTGTGTTCGTTGTT
GCCCATAATGCAATCCCACGAACACGTTTCAGGTGGAAGTCGCGAAACTT
CTTGATAGCACTTGTGAATGGGACCCCTACATGTGCTGCTGGACCGGCAA
CGACGGAGCGGACGGGATGACGGCGAACTCCGACGTCTGCCGCGTACTGG
ACTACCCGGAAGAGGGAGACTCCTTCGAAATGCCCCGGGAATCAGAGGGC
TTCGTGTGCTGGTGGGTCCATATGCCTGTCTTTCTTTGTAGAGATCTGAG
TGTTTCAAGTAGTCTACTGCATTTTGTTTATCCTTTTTTGAGCAAAAGAT
CTACGCCATGCATGGGATCCCGCATCGTAATACAGCGGGGGGGCGTCATG
AACGCCGGTTGATTAGCGCCGGTGGCCTTGTATTGCGTCGGTGAAATTGC
TGGGCACAGACCGACAATCATTGTGTACATTGAATAGCGCCGGTCCCTCT
GAATAGCGCCGGTCGATTCGCCGGGCACAAACCGCCGTATTGAGGGCCCT
CCACTGTAGTCCGTATTTCGTTTTGGTTTTGGTTAATTTTCTTTCTTCTG
TTTGGGGAAGCGATCACTTCCCCTGGATATGGATTTATCCTCTACAGCTC
CTGCTGGGGTGCTAAAACGGTAACGCGATATCTTGTTTGCTTTAACAAAG
CTGTTCGTGTGCCCACCCCGCCTTGCTTCTGTTTTGATGCCAACCAACGT
CAGCCACGGCTTCGCCTGGGCGGAAGGCGCGGACGTGGACACCCACATCC
TGCCCCTGTACCACTACGTGAAGAACGTCGGCCGTACCGAAGAGGCGGGC
TTCTACGGTGAGTCGACATCTGTTGGTGGTTTTTGCTCTTGAGCTAAATA
CGCGACGAGCAATTCTGACTTGCGGTTGCTCGGGCGCGGTTACCGTAGAT
TCCTACTTCGTACCTGACGAAGATCACCGGAGCATTGGTTTTTGGAATGA
CTTGCAGTACTACAGTTGTAGCAGGAGGCCTTGGCTAGAGGTATCGGAAG
GGGCAATCTCTGGTAGACCTTCCTCTACGTAGGGCTCCGTCTTCTTCGCG
TACGGCCCGTAGTACCGTTGTTGGACACTGCTGCGTTGAATGTGTACGCA
GAGATGAAGCTGCCGGATAGGTCCGTGCCCTGTCACATCACTAGCAGCGC
CGTTTGTTCCATTCGGGCCATGTCAGGGGAACGACGGCTACATCTTCTGT
CTTCGTCGTGGTGCCGATTGTCCACCGCATCACCCTCCGGCAGTTTTTGG
TTCCCTTCGTGTTTACCCTTTTGCTCCGGGGAAATGTGCACGGTAGGCCC
ACCACGGCCGTTTGGCGAACCTCTCGTGCTGAAATCTTGATCCTCTCCTT
GCACGTTTGTCGTTGATTGAATTCTCGTGTGCAATCCGACAGCGTGGAGG
GAACGCCGGAATGCGGGTGCATCGAGGAAATACCTTCGGTGTCCTGCTCC
GAGTGCTCCAGGTACGAACGTCAACGTTTTGGTTTGCTGAAAACCTACCT
AGTGGGGAGCCATGGTTAAGGGCTTTGCCAAAGGACAACGTAACGACATT
TAGTAGTCGAGAGTGGGATTACCAGCCATGCCGGCGTTTGTAGGTAGAAC
ATTACCTGAAACGTATGAATCTTTGATGTGACCCTCGACATGACCCCTTT
CCTTCTTGTCACGTGACCAGGTACTCCTGGGAGGGGATCGCTGGTTGCGG
CAACAACGGGCTGTTAAGCCAGTACCGCGGTTGCCTGGGCGAGCCCTGCG
GCCCTATGGACGACAATCTGGTGAGGACATGCGACAACGAAGACATTCCC
GACTACGACCACGGGTCGTGCAGTCACAACACGTACATGTGCTGCTTGAC
GGAGAACGACGGCCAGGGAATGGCAGAAAACACGGTGAGACGTCGCGTGC
CGGCCGTGGCCTCTTGCGTGGAATTTTCTTGCTACAGTGCTGACAGGTGT
TGTTTATCTCGAGCGTGATGACTCTTTGGCCCCCTTTCCAAACGTGTGAA
CCCTCGCGCAGTACCATCTCTGGACAATCCCGTCTATCGACAAGACACGT
ATGCTAGGAAGGATGTTGGGCTGACTATGTTGTCTGTTATCTTGGGTCAT
CTTGGTGCCACGAAGGACGTGTGCCGTGTGTTGGACTACCCGTCGGTGGG
TGGGGCGTTGGAGTTTGCCGGCGACAGCGAGAGAGAGGCGCACCGCCACG
GGTTCGTATGGACCGAGGACGCCACCGACAAGTACATCCACCTCCTGTCG
CAGTTCGTCCAGAAGTTCGACCACAGGGACAGGAGGGGGTACTACGGAAA
GTGAGTCGCCTCGTACGTTTACCTCTGCATGCCCACATCGGTATCCCGTC
CTCGTCAGCCTGTCGCCGAATTGAACAACATTTGTTTCGTAAGACGCGTG
CTTGTGTGGACGGTCGCCCGAGTTTTCGCGGTGGTGACGTGCACCATTCT
ATTTTCTACTGAATGCCGACCATGGTACCACGTCTCATACACGACACACC
TCTCTCCATCTCACCCCTACCGAAACAAAAACACGTACCACACTATGTAG
GGCAAACAGGTACATTACTGTAGGAAAAGCAGCGCACAACGTCATCATGG
TGAATGGGAGAACGACTGGTCCAGGCGAGGACAACACGAATAACCCACTG
TCTCCTCCTCCAAACGTTTCGCATGTCATTCTTGTCGTAACCAGTATCGA
GGGCGCCCCCATGTACGGCTGCGTCGAAGAGATGCCGGTGGTTTCCGAGG
CTGACGGCACCACCTACGATACCGACCCGGAGCGAGAGGGCAAGTTCACG
GCGTGCACGACGAACGACCTCTGCACCCGCTACGCGGAAGACTACCCCAC
GGGGGAGCTTGCCAACCTCGTCGGCACCTACGACAACGCGGAGTAA
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Coding sequence (CDS) from alignment at Scaffold_230:310775..314020-

>EsuBft811_6a-0001 ID=EsuBft811_6a-0001|Name=EsuBft811_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1332bp|location=Sequence derived from alignment at Scaffold_230:310775..314020- (Ectocarpus subulatus male Bft15b)
ATGAGGCGATCACGATGGGCAGCGGAACGGATGACGGGGGCGAGGAGGAA
GGGGCCGATGGAAAACCCTGATGACGGGGCGTCCTGCTCCACCTACGAGG
AGCATGTGGAAGTCGCGAAACTTCTTGATAGCACTTGTGAATGGGACCCC
TACATGTGCTGCTGGACCGGCAACGACGGAGCGGACGGGATGACGGCGAA
CTCCGACGTCTGCCGCGTACTGGACTACCCGGAAGAGGGAGACTCCTTCG
AAATGCCCCGGGAATCAGAGGGCTTCGTGTGCTGCCACGGCTTCGCCTGG
GCGGAAGGCGCGGACGTGGACACCCACATCCTGCCCCTGTACCACTACGT
GAAGAACGTCGGCCGTACCGAAGAGGCGGGCTTCTACGAGATGAAGCTGC
CGGATAGCGTGGAGGGAACGCCGGAATGCGGGTGCATCGAGGAAATACCT
TCGGTGTCCTGCTCCGAGTGCTCCAGGTACTCCTGGGAGGGGATCGCTGG
TTGCGGCAACAACGGGCTGTTAAGCCAGTACCGCGGTTGCCTGGGCGAGC
CCTGCGGCCCTATGGACGACAATCTGGTGAGGACATGCGACAACGAAGAC
ATTCCCGACTACGACCACGGGTCGTGCAGTCACAACACGTACATGTGCTG
CTTGACGGAGAACGACGGCCAGGGAATGGCAGAAAACACGGTGAGACGTC
GCGTGCCGGCCGTGGCCTCTTGCGTGGAATTTTCTTGCTACAGTGCTGAC
AGGAAGGATGTTGGGCTGACTATGTTGTCTGTTATCTTGGGTCATCTTGG
TGCCACGAAGGACGTGTGCCGTGTGTTGGACTACCCGTCGGTGGGTGGGG
CGTTGGAGTTTGCCGGCGACAGCGAGAGAGAGGCGCACCGCCACGGGTTC
GTATGGACCGAGGACGCCACCGACAAGTACATCCACCTCCTGTCGCAGTT
CGTCCAGAAGTTCGACCACAGGGACAGGAGGGGGTACTACGGAAAGTACA
TTACTGTAGGAAAAGCAGCGCACAACGTCATCATGGTGAATGGGAGAACG
ACTGGTCCAGGCGAGGACAACACGAATAACCCACTGTCTCCTCCTCCAAA
CGTTTCGCATGTCATTCTTGTCGTAACCAGTATCGAGGGCGCCCCCATGT
ACGGCTGCGTCGAAGAGATGCCGGTGGTTTCCGAGGCTGACGGCACCACC
TACGATACCGACCCGGAGCGAGAGGGCAAGTTCACGGCGTGCACGACGAA
CGACCTCTGCACCCGCTACGCGGAAGACTACCCCACGGGGGAGCTTGCCA
ACCTCGTCGGCACCTACGACAACGCGGAGTAA
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