EsuBft144_19a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft144_19a-0001
Unique NameEsuBft144_19a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_228contigScaffold_228:444097..445060 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft144_19
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length96
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_002510.2
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft144_19aEsuBft144_19aEctocarpus subulatus male Bft15bgeneScaffold_228 444097..445060 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_19a-0001-exonEsuBft144_19a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_228 444097..445060 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_19a-0001-exonagat-three_prime_utr-3964Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_228 444097..444153 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_19a-0001-cdsEsuBft144_19a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_228 444154..445029 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_19a-0001-exonagat-five_prime_utr-2607Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_228 445030..445060 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft144_19a-0001EsuBft144_19Ectocarpus subulatus male Bft15bpolypeptideScaffold_228 444154..445029 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft144_19a-0001 ID=EsuBft144_19a-0001|Name=EsuBft144_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=964bp|location=Sequence derived from alignment at Scaffold_228:444097..445060- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGGTGTTATTTTTTCTCCTCGCGGCGAAGGCATGACGGAGTTCGAAAGAG
GAGGTCGCAACAACGAGAATCATCATCGGGGGGAAGCTTTCATCACGAAG
AAGAGAGACAGCAACAACAACGACAACGACGCGGCGTTTCTGAAGAGCAA
GCGCCAGAGGAGCATGGCTGATCGCCAAGAAGAAGAGCAACATCAGCCGC
CGCAGACTCGCCGGATGGTCACCGACGGTATGGGTTGTGTTGGTTTGGTG
GAGAGGTTGGCCCAGTCGAGTCATTTTCTTGCCGTCCCCTCTCTCAAGAC
GACCAACTTGCCCAACCCCACGGACGAGGCTGTCTCGGAAAGCCGGCTGA
TCCAGACCTCGCCACCAAAATTAATCAACCGCGAAGAGAGTAGCGGCACA
GAAAGTAGCATGAGCGGCAGCATCGCTAACAGCAGCAGCGTTAGTAGCGC
GATGGATGATCGCGAGTCAGTTTTCACTCCGATGACTAACACCGAGGGCG
TCGCCGAGATCGATTCTCCCGCCCCACTCTCGAGCAGTTTCAGTCAAAAG
AAGGGCGACTCGGTTCAACCCCCCGCTGACCGTAGCGAGCAGAGTTCGTC
GAGCGACGAGTGGGTGTGCAGGGCATTTGGGAAAGAAGTATGCGAGAACG
ACATTTCGCACCGCATGTGGTCCTTGAGGAGGCGCGGCTTCGACGAGTAT
GTCATGCGAATAATGGATGAGTGTGTGTATGAGAGCGATGACGAAGATTT
CATGGCGTCCCCGGAGGGTAGAAGAATCAATTTGGACGCAGCAGTCGACG
AACAGCAAGAAGAGGAATTGGTAGCACAAAAGTATGACGGCACCCACGCG
CACGAGCCCCCGCTCCCCGAACCGATAGTGGTGACGCCTGAAAGACTTCT
GTTGTAGATTTGGCGATGACCCGAAATATTACACTGGTTTGTCGTCGTTC
CCCTCATCGCTCCT
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protein sequence of EsuBft144_19a-0001

>EsuBft144_19 ID=EsuBft144_19|Name=EsuBft144_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=291bp
MTEFERGGRNNENHHRGEAFITKKRDSNNNDNDAAFLKSKRQRSMADRQE
EEQHQPPQTRRMVTDGMGCVGLVERLAQSSHFLAVPSLKTTNLPNPTDEA
VSESRLIQTSPPKLINREESSGTESSMSGSIANSSSVSSAMDDRESVFTP
MTNTEGVAEIDSPAPLSSSFSQKKGDSVQPPADRSEQSSSSDEWVCRAFG
KEVCENDISHRMWSLRRRGFDEYVMRIMDECVYESDDEDFMASPEGRRIN
LDAAVDEQQEEELVAQKYDGTHAHEPPLPEPIVVTPERLLL
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mRNA from alignment at Scaffold_228:444097..445060-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft144_19a-0001 ID=EsuBft144_19a-0001|Name=EsuBft144_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=964bp|location=Sequence derived from alignment at Scaffold_228:444097..445060- (Ectocarpus subulatus male Bft15b)
CGGTGTTATTTTTTCTCCTCGCGGCGAAGGCATGACGGAGTTCGAAAGAG
GAGGTCGCAACAACGAGAATCATCATCGGGGGGAAGCTTTCATCACGAAG
AAGAGAGACAGCAACAACAACGACAACGACGCGGCGTTTCTGAAGAGCAA
GCGCCAGAGGAGCATGGCTGATCGCCAAGAAGAAGAGCAACATCAGCCGC
CGCAGACTCGCCGGATGGTCACCGACGGTATGGGTTGTGTTGGTTTGGTG
GAGAGGTTGGCCCAGTCGAGTCATTTTCTTGCCGTCCCCTCTCTCAAGAC
GACCAACTTGCCCAACCCCACGGACGAGGCTGTCTCGGAAAGCCGGCTGA
TCCAGACCTCGCCACCAAAATTAATCAACCGCGAAGAGAGTAGCGGCACA
GAAAGTAGCATGAGCGGCAGCATCGCTAACAGCAGCAGCGTTAGTAGCGC
GATGGATGATCGCGAGTCAGTTTTCACTCCGATGACTAACACCGAGGGCG
TCGCCGAGATCGATTCTCCCGCCCCACTCTCGAGCAGTTTCAGTCAAAAG
AAGGGCGACTCGGTTCAACCCCCCGCTGACCGTAGCGAGCAGAGTTCGTC
GAGCGACGAGTGGGTGTGCAGGGCATTTGGGAAAGAAGTATGCGAGAACG
ACATTTCGCACCGCATGTGGTCCTTGAGGAGGCGCGGCTTCGACGAGTAT
GTCATGCGAATAATGGATGAGTGTGTGTATGAGAGCGATGACGAAGATTT
CATGGCGTCCCCGGAGGGTAGAAGAATCAATTTGGACGCAGCAGTCGACG
AACAGCAAGAAGAGGAATTGGTAGCACAAAAGTATGACGGCACCCACGCG
CACGAGCCCCCGCTCCCCGAACCGATAGTGGTGACGCCTGAAAGACTTCT
GTTGTAGATTTGGCGATGACCCGAAATATTACACTGGTTTGTCGTCGTTC
CCCTCATCGCTCCT
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Coding sequence (CDS) from alignment at Scaffold_228:444097..445060-

>EsuBft144_19a-0001 ID=EsuBft144_19a-0001|Name=EsuBft144_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=876bp|location=Sequence derived from alignment at Scaffold_228:444097..445060- (Ectocarpus subulatus male Bft15b)
ATGACGGAGTTCGAAAGAGGAGGTCGCAACAACGAGAATCATCATCGGGG
GGAAGCTTTCATCACGAAGAAGAGAGACAGCAACAACAACGACAACGACG
CGGCGTTTCTGAAGAGCAAGCGCCAGAGGAGCATGGCTGATCGCCAAGAA
GAAGAGCAACATCAGCCGCCGCAGACTCGCCGGATGGTCACCGACGGTAT
GGGTTGTGTTGGTTTGGTGGAGAGGTTGGCCCAGTCGAGTCATTTTCTTG
CCGTCCCCTCTCTCAAGACGACCAACTTGCCCAACCCCACGGACGAGGCT
GTCTCGGAAAGCCGGCTGATCCAGACCTCGCCACCAAAATTAATCAACCG
CGAAGAGAGTAGCGGCACAGAAAGTAGCATGAGCGGCAGCATCGCTAACA
GCAGCAGCGTTAGTAGCGCGATGGATGATCGCGAGTCAGTTTTCACTCCG
ATGACTAACACCGAGGGCGTCGCCGAGATCGATTCTCCCGCCCCACTCTC
GAGCAGTTTCAGTCAAAAGAAGGGCGACTCGGTTCAACCCCCCGCTGACC
GTAGCGAGCAGAGTTCGTCGAGCGACGAGTGGGTGTGCAGGGCATTTGGG
AAAGAAGTATGCGAGAACGACATTTCGCACCGCATGTGGTCCTTGAGGAG
GCGCGGCTTCGACGAGTATGTCATGCGAATAATGGATGAGTGTGTGTATG
AGAGCGATGACGAAGATTTCATGGCGTCCCCGGAGGGTAGAAGAATCAAT
TTGGACGCAGCAGTCGACGAACAGCAAGAAGAGGAATTGGTAGCACAAAA
GTATGACGGCACCCACGCGCACGAGCCCCCGCTCCCCGAACCGATAGTGG
TGACGCCTGAAAGACTTCTGTTGTAG
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