EsuBft1154_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1154_8a	EsuBft1154_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_106 261283..266729 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1154_8a-0001	EsuBft1154_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_106 261283..266537 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1154_8a-0001-exon	agat-exon-13160	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 261283..261425 +
EsuBft1154_8a-0001-exon	agat-exon-13163	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 262357..262766 +
EsuBft1154_8a-0001-exon	agat-exon-13161	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 263491..263610 +
EsuBft1154_8a-0001-exon	agat-exon-13162	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 265083..265347 +
EsuBft1154_8a-0001-exon	EsuBft1154_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 265828..265963 +
EsuBft1154_8a-0001-exon	agat-exon-13159	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 266397..266729 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1154_8a-0001-cds	EsuBft1154_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_106 261283..261425 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1154_8a-0001-exon	agat-three_prime_utr-1479	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_106 266538..266729 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_106:261283..266729+
coding sequence from alignment at Scaffold_106:261283..266729+

spliced messenger RNA

>EsuBft1154_8a-0001 ID=EsuBft1154_8a-0001|Name=EsuBft1154_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1407bp|location=Sequence derived from alignment at Scaffold_106:261283..266729+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTGGCACTCGGATCCTTTCGTGCGGCCGTTGCTGGGGGCCCACAA
ATCGGAACTCTTGGAGTTTTTGGTCCGGGGGGGGCATGCCTGGAGAGAAG
ACGGGAGCAACCAGGTGGCTAAGTACGCCAGGAATCGCGTGCGGCTCCAG
TTGATCCCTCTCCTGCGGGAGCTCGCCGGCGGGGCCAAGGCTCTCGACAC
CCGCGTCGAGGAGCTCTCCCGCCAGAGCCACTTCGCCAGGCAGATGGTAG
AGCGTGAGGCGCTGCACTGGGAGAGGGAGCACTTGTCAGGGTGCCGTTTC
GACGACGAAGGGGGGGGTTGCAGTGATGAGACTGACCAGGTCGGAGGGTC
TGACCAATCAGCAGGTGCCGGGGGAACGGTTGATCGATCCGAAGGGGTCG
GGGACGTGGCGCCGTCGGGGATAAGGCGAAAGGAGTTCCCGCTGCAGGCG
TTCTTGAGGAAGGGGCCGGGAGGAGAGGGTAGTGAGCAAGGGTGGGCAGG
GTCTGACTTGCCGGAGCTGGTCAGAGAGGAGCTGTTGCATCGGTTCATCG
TTGCAAATACCGGCAACTCGCCGTTGTCCTACGCAAACCTGCGGCTCCTG
ATGCGGCAAGTGGACGGGGGCGATAGGAAGTGGTCGATTTCACTAGAGGG
TGGCTACTACTTGCGTCGAGTAGGCGACTTGCTCCGCATTGAGCAGAGCC
CTGCGGACGGCGGAATCATAGTATCGGGCCTCGAAGGTAGGGTAGTCTCG
GAGCAAGGCATAGTGCGACACTCCACGGATGCAGCCACCACACCGTGGGA
GATGGTGGTCAGCCCTTGGGGGGAAGGAGGTAGCATTGCGTTGGGCGGAG
AGGGTGATAGTGGCCATGGGGAGGGAAGGGCGACAGAAGCGGGGATGGTG
CTCTTCAACGTGGCTGCGGGGGCGCGGCTGCACGTCAGGCGAAAAAAGGA
TGGGGATCGCTTTCAGCCAGCATGGCGCGATAGGCCCGCGAAGCTCAAGG
ATTTCCTTCGCGGGCAAGGGGTGCCGTTACACCGCAGGGACGAAGTGGCC
TTAATCTGCGACCACCACGACTCGGTTATCGCGGTGTACCCATCCTACCC
CGGGTTCGGGGTTTGCCAGGATAGCACCGGGGAGGAACCGATTCGCGTAA
GGATAGCGGGGACGCCCCTGTTTTGTCCCCGCCCGGAGGATCGGGGAGGA
GCACCCGCCTCATGACATGGCATGGCGTCTTCATTCGATTGTTGACATTT
GTGGACAAACCAAGGGTCCGCGGGGACTAGCAATCGGGACACGTAGCTCT
GACTGGGGCAGAAAAGTATACAATGACCGACCATGGAAATACGAACGAAA
GGAATCGAGAAATCGCGTTGCGGGCCTTTGCGACGTGCACGATTCGTTTT
CTGTTGT

protein sequence of EsuBft1154_8a-0001

>EsuBft1154_8 ID=EsuBft1154_8|Name=EsuBft1154_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=404bp
MAWHSDPFVRPLLGAHKSELLEFLVRGGHAWREDGSNQVAKYARNRVRLQ
LIPLLRELAGGAKALDTRVEELSRQSHFARQMVEREALHWEREHLSGCRF
DDEGGGCSDETDQVGGSDQSAGAGGTVDRSEGVGDVAPSGIRRKEFPLQA
FLRKGPGGEGSEQGWAGSDLPELVREELLHRFIVANTGNSPLSYANLRLL
MRQVDGGDRKWSISLEGGYYLRRVGDLLRIEQSPADGGIIVSGLEGRVVS
EQGIVRHSTDAATTPWEMVVSPWGEGGSIALGGEGDSGHGEGRATEAGMV
LFNVAAGARLHVRRKKDGDRFQPAWRDRPAKLKDFLRGQGVPLHRRDEVA
LICDHHDSVIAVYPSYPGFGVCQDSTGEEPIRVRIAGTPLFCPRPEDRGG
APAS

mRNA from alignment at Scaffold_106:261283..266729+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1154_8a-0001 ID=EsuBft1154_8a-0001|Name=EsuBft1154_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5447bp|location=Sequence derived from alignment at Scaffold_106:261283..266729+ (Ectocarpus subulatus male Bft15b)
ATGGCGTGGCACTCGGATCCTTTCGTGCGGCCGTTGCTGGGGGCCCACAA
ATCGGAACTCTTGGAGTTTTTGGTCCGGGGGGGGCATGCCTGGAGAGAAG
ACGGGAGCAACCAGGTGGCTAAGTACGCCAGGAATCGCGTGCGGTGAGAA
GGTAGACACCTGTTGATCGACAGCAGGTATACACTGCTGTTGCCTCTATT
GTGTACACCTTGTGTGGCTATACTTGCGTCTCTGATGCCGTTCGCTCGTT
TTTTCCGTCCATGTTGATGTTGTCGTCGTTGTCATTGAGTAGGTCACGGT
TACGTGTTTCTTTGCGTCTTTTGCTCGGCGTTGCTTCGCTTGTCGTGCTG
GCTTCGGCCAGCTGTCCTGTTGCAGGACTGACCCCCTTGTCTGCACTCAA
CCTTTCTCTTTTTGGTGTGGCACCTTTGGCAGCCTCGTTATTGTGTCTGC
AGACTTCAATGAGGGCTTCGTGTGTTTGTAGAGAAAAGAACGTTGCACAT
GTGTCTTTGCCGTCCGCAGCGTGTCATGCACCGCCCTTGTTCTTCGTATT
TCGCTCAGCATTTCAACAGTGCGTTGCTCACTCTCCTCTCTGTCGAAATT
CCGCTCCCCGCCCCACCCGCTCCGCCAAGCTTTTCTCGCGCTCCGAACTG
CACTTCACTTTTTTCCCGTACGTTCCACCCCGTCTGCCCCATCACCGCTT
GTGCTTTGCTCACCGCTTTCTACGCTTTTCACACGCCACGGCTTGTCCCT
TTTCTTTGGGGGAGAACCGTGTGATATGACGACCCTATGCTCGTACTCCC
CCCATCTCTCGCAAAGCCATTTTGCATGCGATCCCACTACAGATAGCGCC
CGTAATTGACTGAGAACGTGGCACTTAAGAACTTAATGCTCAACATTATA
TCGCACATAGGAACGTGAGCACCGTTTATGAGCCCGGTGAAGATTCCCAG
CACTAAAACCTATGCAGCGGTCATTTGTGGCCCAAACGAGGAACTACTGT
ACAGTAAGAACCCTAGCCTCAGTCAACGCTAGAGGTTCTTAAGCGCGGGC
GCTATCTGTTCCGTCCTGTTGCAGGCTCCAGTTGATCCCTCTCCTGCGGG
AGCTCGCCGGCGGGGCCAAGGCTCTCGACACCCGCGTCGAGGAGCTCTCC
CGCCAGAGCCACTTCGCCAGGCAGATGGTAGAGCGTGAGGCGCTGCACTG
GGAGAGGGAGCACTTGTCAGGGTGCCGTTTCGACGACGAAGGGGGGGGTT
GCAGTGATGAGACTGACCAGGTCGGAGGGTCTGACCAATCAGCAGGTGCC
GGGGGAACGGTTGATCGATCCGAAGGGGTCGGGGACGTGGCGCCGTCGGG
GATAAGGCGAAAGGAGTTCCCGCTGCAGGCGTTCTTGAGGAAGGGGCCGG
GAGGAGAGGGTAGTGAGCAAGGGTGGGCAGGGTCTGACTTGCCGGAGCTG
GTCAGAGAGGAGCTGTTGCATCGGTTCATCGTTGGTGAGCTAACGAGTCA
CGGCAGCACCGCAGTACCACCGAATTTGATCACGCTATGTGCGCCGCGAG
GGATCTCAGCTTTGGTAGGAGGTTAGTCAAAGCTCGAATAGGTGTTGATG
GCGACGCAAATCCAGGTCAAACGCGGCACGTACGCGGCTGGTTCGCAGTT
ACCTCGCAATAGCCAGTTACGGCTGGTGTGGTTTTCAAGTTTCGAATGCC
CCGGGCTGTGGCCGTGTTGTAGCTCTTCGATGGCCGGAAGTCAAGATGAT
ACCCAGCACGTGAAGCGAAATGTCTGGTTTTGCGTGCCCCCGCGAGCAAC
CGGTGTCTAGGGTGTGCGACATGGGCCTATCTTTGCCTCCGACGGAAACG
TCCAAGTTGTCCCCCACGCGTTTTCCCGCAAGTGTTGGTGGCACCTCTAC
TGTTTGATCGATCCTAGACACGCACCCGAAAAGCTTTCTTGAGACTATGG
GTTGCTTCAGAACGTGACAATGAAGTGCGTCGACCATCTCTTTTCATCCT
TTTTGGCGCGTTTTACGTCTACCAAAGGCGGCACTCAAGCCCCCCCCCCC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCACCGC
CCCTCGCTCGTGGCCCCACCCCTGCTCCTGCGACACCGTCTCGGACATGG
CATCGCAGCAAATACCGGCAACTCGCCGTTGTCCTACGCAAACCTGCGGC
TCCTGATGCGGCAAGTGGACGGGGGCGATAGGAAGTGGTCGATTTCACTA
GAGGGTGGCTACTACTTGCGTCGAGTAGGTGAGGCTGCGTGAACGCCAAC
ATGTGGTTTTCCAGAAAGGACGAGGTGGAATTCTGCCTTGGCTCTTTGTT
CGCTGGGTGATGAATGCTTGCGGCTGCTGGCTAGGGCTTGCCCCATGCCG
TGTTGTAGCAGGCTGTCCATCCATCGTAGCTGTTCTTGCTGGGAAGGTGT
AGTTGTCGTGTCGTGCGTGTAATCACCTTCTGTTGTTGCTTTTGTCGTCG
TCGTCGTCGTTGTTGTTCTTATTTACAATGATGTTGATGTTGTACATCGG
GGTCATAATCTTTGCAGAGGTTTCTTTACGATTCAAGTGTTGCTCATATA
CCGCTGTGTTTGCCCCGGTTTGAGCATGCCGTCCCGCGGTCGCAAACCCA
AGACATTATTCAGAGTTTGCTTCTTGTCCCATCGCCCCACCGTGCTCACT
TCCATGTCTTCTCAGTCACAACAATTGCACAGGTTTGTCTTATTTTCTGT
CGACCCATCCACCGTTCACATTCCCGTTGTTACCCGTCTTGGTAATGTCG
AACACGGATTCATGCTTCGACGACGGGCAGGCTCTGCCATAACGACGGAG
CTGAGGGTCGTAGATCATGACGACCGCATGTTGTTGCCCTGTCTAGGACC
CGACCTACTACCCCCACACTTCGCATTACATACGACTGAAGTACAGTGGG
GGACCCTCAGTAGTGCCTGTATGGACCAGACGACCACACCGGCACTTTTC
AGAGGGACTGGCACTTATGCGAATAGTGCCAAAACCGGCACTATGGAGGG
CTGGTGGAGTAAACCGAGGGGGCCGCAGAAGAAAAATGTTTCGCGGCACG
CACGTATTTCGTTGCGGGTTGCCATTTCTGCTGCAATCAACGACTTGGAA
CTCGGAAGTTGTGGCACGGTGCGATATGTATAAGTATCTCTCTACATTTC
CCCCACTACCAAACTATTTGTCAAGCCCTCGAAGGCACAAAGTTGGTTGA
CCTTGAGCACATGCAGTTTGTTTCGAACAAAGTAAATTAACACATCTTGA
CCAGAACAACAAAAAAGTGCTATTGATAGCATCTTCCATCTACAATCAAG
CACGCGGGCAGAGGGAAGGGTAAATAGACACCAACAAACAAGCACAAGAG
GAGTTACAGTTCATCACCCGCAGCGCACGGCATCGTGTGCCTCTGCGTCG
CAAGCTATAGGGCTCCAGCAGTACACTTTTGTGCCACTCTCGCTGCGGTT
GTGCGTGTGTGTGTGGTGTGAAAACTGCCGAAACGGCACTATTGAGGTTT
TCAGTTTTCAATGGGGCTAAACCTGCACTATTGATGGCGTCTCACAGAGT
AGTGCCGGTACCGGCACTGCCGCGGGTTCTGTCTGTGCAGAGAAATTTCA
TCGGCACTATAGCGGGCACCGGCAATATTCAACCGGCACTGCTGAGGCCC
CCCCACGATCTATGTGTCGTGCGCTCGGGCAACATTCTCCGAACACGCAG
GCGACTTGCTCCGCATTGAGCAGAGCCCTGCGGACGGCGGAATCATAGTA
TCGGGCCTCGAAGGTAGGGTAGTCTCGGAGCAAGGCATAGTGCGACACTC
CACGGATGCAGCCACCACACCGTGGGAGATGGTGGTCAGCCCTTGGGGGG
AAGGAGGTAGCATTGCGTTGGGCGGAGAGGGTGATAGTGGCCATGGGGAG
GGAAGGGCGACAGAAGCGGGGATGGTGCTCTTCAACGTGGCTGCGGGGGC
GCGGCTGCACGTCAGGTGAGCGAGCGGCGGTTTTGTGAGCGTGGATGTGT
TGTGGGTGTGTGTTGAGGTGCGAGAGAGAGGCCAAGCTCAGGCTGTGTAT
ACGGTTGGTGTAGATTGTTTATCTTCACACTTAAGTGTGGGCAGAAATGG
AAAACTTATTTGTGAACGTTGCTTTCTTTCGTCAGAGCGTTTTCATCGTG
CATCCTTGAGCCCTTTCGACATGGCGCACCACCTTATCTTGGGCGGAGTC
TTTCATGTCTCTTGTCTCTTGGCGACATGTAGAGAACTTTCACTGTACGC
GCCGGACCGTTGTGTCCGTTCGGCGATTTAACGTCTCGTTTGATTTTCGT
GTTGGCACATTTTTTCACCGTCCCGGCATGACGAAACGCAGCAGCAAGAC
TTGGTGTTGCCGTCTCTCGCGACCTTTTCTCCGTACATACGCCTCTCCCT
TTGCCCACGGCGACACCCATTTGCAATAATCTTGCCCTTTCGAAGGCGAA
AAAAGGATGGGGATCGCTTTCAGCCAGCATGGCGCGATAGGCCCGCGAAG
CTCAAGGATTTCCTTCGCGGGCAAGGGGTGCCGTTACACCGCAGGGACGA
AGTGGCCTTAATCTGCGACCACCACGACTCGGTAAGGAGAAGAGGTTCGC
CGTCAAAGCACTTTTTTTTGTTAGCAAGTGCCATTTGGTGGATGCGTGCG
TGTGTTGTACGACGCCGTGCAGCGCGAAGTCAACACCAGTCCGAAGAGCT
GCTTGTGTACGTGTAGCTTTCCATCTCCGCAACTTTTTGTTGGTTTTCTT
GTAAGTGTCGGAGGGATTCAGTCTCGGCACCGCTTACAGGGATTCACTCT
GTGCAGGCCGGCTTTGTTTGTACTACCGGCCACACTCTCACGGCAGTCTA
CGAAGCATTCATTCCACCATATGATAGAAAAGTGCTGCCTATCTTCTTGT
CAATCAATCTCCTTTTCCCTGACCAACCGCCCTTTGCCTCCGGCGCGTCA
CCCTTGCCGCTGCACCTCTGTTGTCTCGTTCGGCCTATCCTTTCGTCAAC
TACCACGCGTTAAGGTTATCGCGGTGTACCCATCCTACCCCGGGTTCGGG
GTTTGCCAGGATAGCACCGGGGAGGAACCGATTCGCGTAAGGATAGCGGG
GACGCCCCTGTTTTGTCCCCGCCCGGAGGATCGGGGAGGAGCACCCGCCT
CATGACATGGCATGGCGTCTTCATTCGATTGTTGACATTTGTGGACAAAC
CAAGGGTCCGCGGGGACTAGCAATCGGGACACGTAGCTCTGACTGGGGCA
GAAAAGTATACAATGACCGACCATGGAAATACGAACGAAAGGAATCGAGA
AATCGCGTTGCGGGCCTTTGCGACGTGCACGATTCGTTTTCTGTTGT

Coding sequence (CDS) from alignment at Scaffold_106:261283..266729+

>EsuBft1154_8a-0001 ID=EsuBft1154_8a-0001|Name=EsuBft1154_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1215bp|location=Sequence derived from alignment at Scaffold_106:261283..266729+ (Ectocarpus subulatus male Bft15b)
ATGGCGTGGCACTCGGATCCTTTCGTGCGGCCGTTGCTGGGGGCCCACAA
ATCGGAACTCTTGGAGTTTTTGGTCCGGGGGGGGCATGCCTGGAGAGAAG
ACGGGAGCAACCAGGTGGCTAAGTACGCCAGGAATCGCGTGCGGCTCCAG
TTGATCCCTCTCCTGCGGGAGCTCGCCGGCGGGGCCAAGGCTCTCGACAC
CCGCGTCGAGGAGCTCTCCCGCCAGAGCCACTTCGCCAGGCAGATGGTAG
AGCGTGAGGCGCTGCACTGGGAGAGGGAGCACTTGTCAGGGTGCCGTTTC
GACGACGAAGGGGGGGGTTGCAGTGATGAGACTGACCAGGTCGGAGGGTC
TGACCAATCAGCAGGTGCCGGGGGAACGGTTGATCGATCCGAAGGGGTCG
GGGACGTGGCGCCGTCGGGGATAAGGCGAAAGGAGTTCCCGCTGCAGGCG
TTCTTGAGGAAGGGGCCGGGAGGAGAGGGTAGTGAGCAAGGGTGGGCAGG
GTCTGACTTGCCGGAGCTGGTCAGAGAGGAGCTGTTGCATCGGTTCATCG
TTGCAAATACCGGCAACTCGCCGTTGTCCTACGCAAACCTGCGGCTCCTG
ATGCGGCAAGTGGACGGGGGCGATAGGAAGTGGTCGATTTCACTAGAGGG
TGGCTACTACTTGCGTCGAGTAGGCGACTTGCTCCGCATTGAGCAGAGCC
CTGCGGACGGCGGAATCATAGTATCGGGCCTCGAAGGTAGGGTAGTCTCG
GAGCAAGGCATAGTGCGACACTCCACGGATGCAGCCACCACACCGTGGGA
GATGGTGGTCAGCCCTTGGGGGGAAGGAGGTAGCATTGCGTTGGGCGGAG
AGGGTGATAGTGGCCATGGGGAGGGAAGGGCGACAGAAGCGGGGATGGTG
CTCTTCAACGTGGCTGCGGGGGCGCGGCTGCACGTCAGGCGAAAAAAGGA
TGGGGATCGCTTTCAGCCAGCATGGCGCGATAGGCCCGCGAAGCTCAAGG
ATTTCCTTCGCGGGCAAGGGGTGCCGTTACACCGCAGGGACGAAGTGGCC
TTAATCTGCGACCACCACGACTCGGTTATCGCGGTGTACCCATCCTACCC
CGGGTTCGGGGTTTGCCAGGATAGCACCGGGGAGGAACCGATTCGCGTAA
GGATAGCGGGGACGCCCCTGTTTTGTCCCCGCCCGGAGGATCGGGGAGGA
GCACCCGCCTCATGA