Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 159749.K0RP98 |
| ProteomeId | EsuBft1154_8 |
| Protein domains | IPR012796 |
| Protein domains | IPR020825 |
| Protein domains | SSF52402 |
| Protein domains | IPR011063 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | -lysidine synthase os:treponema denticola (strain atcc 35405 cip 103919 dsm 14222) gn:tils pe:3 sv:1 [Automatic annotation] |
| Nb exon | 6 |
| Max annot lvl | 2836|Bacillariophyta |
| Length | 1407 |
| Hectar predicted targeting category | other localisation |
| Evalue | 9.99e-18 |
| EggNOG OGs | COG0037@1|root,2T6QC@2759|Eukaryota,2XFN2@2836|Bacillariophyta |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | PP-loop family |
| COG category | D |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0005524 |
| GO | 0016879 |
| GO | 0005737 |
| GO | 0008033 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1154_8a-0001 ID=EsuBft1154_8a-0001|Name=EsuBft1154_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1407bp|location=Sequence derived from alignment at Scaffold_106:261283..266729+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGCGTGGCACTCGGATCCTTTCGTGCGGCCGTTGCTGGGGGCCCACAA
ATCGGAACTCTTGGAGTTTTTGGTCCGGGGGGGGCATGCCTGGAGAGAAG
ACGGGAGCAACCAGGTGGCTAAGTACGCCAGGAATCGCGTGCGGCTCCAG
TTGATCCCTCTCCTGCGGGAGCTCGCCGGCGGGGCCAAGGCTCTCGACAC
CCGCGTCGAGGAGCTCTCCCGCCAGAGCCACTTCGCCAGGCAGATGGTAG
AGCGTGAGGCGCTGCACTGGGAGAGGGAGCACTTGTCAGGGTGCCGTTTC
GACGACGAAGGGGGGGGTTGCAGTGATGAGACTGACCAGGTCGGAGGGTC
TGACCAATCAGCAGGTGCCGGGGGAACGGTTGATCGATCCGAAGGGGTCG
GGGACGTGGCGCCGTCGGGGATAAGGCGAAAGGAGTTCCCGCTGCAGGCG
TTCTTGAGGAAGGGGCCGGGAGGAGAGGGTAGTGAGCAAGGGTGGGCAGG
GTCTGACTTGCCGGAGCTGGTCAGAGAGGAGCTGTTGCATCGGTTCATCG
TTGCAAATACCGGCAACTCGCCGTTGTCCTACGCAAACCTGCGGCTCCTG
ATGCGGCAAGTGGACGGGGGCGATAGGAAGTGGTCGATTTCACTAGAGGG
TGGCTACTACTTGCGTCGAGTAGGCGACTTGCTCCGCATTGAGCAGAGCC
CTGCGGACGGCGGAATCATAGTATCGGGCCTCGAAGGTAGGGTAGTCTCG
GAGCAAGGCATAGTGCGACACTCCACGGATGCAGCCACCACACCGTGGGA
GATGGTGGTCAGCCCTTGGGGGGAAGGAGGTAGCATTGCGTTGGGCGGAG
AGGGTGATAGTGGCCATGGGGAGGGAAGGGCGACAGAAGCGGGGATGGTG
CTCTTCAACGTGGCTGCGGGGGCGCGGCTGCACGTCAGGCGAAAAAAGGA
TGGGGATCGCTTTCAGCCAGCATGGCGCGATAGGCCCGCGAAGCTCAAGG
ATTTCCTTCGCGGGCAAGGGGTGCCGTTACACCGCAGGGACGAAGTGGCC
TTAATCTGCGACCACCACGACTCGGTTATCGCGGTGTACCCATCCTACCC
CGGGTTCGGGGTTTGCCAGGATAGCACCGGGGAGGAACCGATTCGCGTAA
GGATAGCGGGGACGCCCCTGTTTTGTCCCCGCCCGGAGGATCGGGGAGGA
GCACCCGCCTCATGACATGGCATGGCGTCTTCATTCGATTGTTGACATTT
GTGGACAAACCAAGGGTCCGCGGGGACTAGCAATCGGGACACGTAGCTCT
GACTGGGGCAGAAAAGTATACAATGACCGACCATGGAAATACGAACGAAA
GGAATCGAGAAATCGCGTTGCGGGCCTTTGCGACGTGCACGATTCGTTTT
CTGTTGT back to topprotein sequence of EsuBft1154_8a-0001 >EsuBft1154_8 ID=EsuBft1154_8|Name=EsuBft1154_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=404bp
MAWHSDPFVRPLLGAHKSELLEFLVRGGHAWREDGSNQVAKYARNRVRLQ
LIPLLRELAGGAKALDTRVEELSRQSHFARQMVEREALHWEREHLSGCRF
DDEGGGCSDETDQVGGSDQSAGAGGTVDRSEGVGDVAPSGIRRKEFPLQA
FLRKGPGGEGSEQGWAGSDLPELVREELLHRFIVANTGNSPLSYANLRLL
MRQVDGGDRKWSISLEGGYYLRRVGDLLRIEQSPADGGIIVSGLEGRVVS
EQGIVRHSTDAATTPWEMVVSPWGEGGSIALGGEGDSGHGEGRATEAGMV
LFNVAAGARLHVRRKKDGDRFQPAWRDRPAKLKDFLRGQGVPLHRRDEVA
LICDHHDSVIAVYPSYPGFGVCQDSTGEEPIRVRIAGTPLFCPRPEDRGG
APAS back to topmRNA from alignment at Scaffold_106:261283..266729+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1154_8a-0001 ID=EsuBft1154_8a-0001|Name=EsuBft1154_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5447bp|location=Sequence derived from alignment at Scaffold_106:261283..266729+ (Ectocarpus subulatus male Bft15b)
ATGGCGTGGCACTCGGATCCTTTCGTGCGGCCGTTGCTGGGGGCCCACAA
ATCGGAACTCTTGGAGTTTTTGGTCCGGGGGGGGCATGCCTGGAGAGAAG
ACGGGAGCAACCAGGTGGCTAAGTACGCCAGGAATCGCGTGCGGTGAGAA
GGTAGACACCTGTTGATCGACAGCAGGTATACACTGCTGTTGCCTCTATT
GTGTACACCTTGTGTGGCTATACTTGCGTCTCTGATGCCGTTCGCTCGTT
TTTTCCGTCCATGTTGATGTTGTCGTCGTTGTCATTGAGTAGGTCACGGT
TACGTGTTTCTTTGCGTCTTTTGCTCGGCGTTGCTTCGCTTGTCGTGCTG
GCTTCGGCCAGCTGTCCTGTTGCAGGACTGACCCCCTTGTCTGCACTCAA
CCTTTCTCTTTTTGGTGTGGCACCTTTGGCAGCCTCGTTATTGTGTCTGC
AGACTTCAATGAGGGCTTCGTGTGTTTGTAGAGAAAAGAACGTTGCACAT
GTGTCTTTGCCGTCCGCAGCGTGTCATGCACCGCCCTTGTTCTTCGTATT
TCGCTCAGCATTTCAACAGTGCGTTGCTCACTCTCCTCTCTGTCGAAATT
CCGCTCCCCGCCCCACCCGCTCCGCCAAGCTTTTCTCGCGCTCCGAACTG
CACTTCACTTTTTTCCCGTACGTTCCACCCCGTCTGCCCCATCACCGCTT
GTGCTTTGCTCACCGCTTTCTACGCTTTTCACACGCCACGGCTTGTCCCT
TTTCTTTGGGGGAGAACCGTGTGATATGACGACCCTATGCTCGTACTCCC
CCCATCTCTCGCAAAGCCATTTTGCATGCGATCCCACTACAGATAGCGCC
CGTAATTGACTGAGAACGTGGCACTTAAGAACTTAATGCTCAACATTATA
TCGCACATAGGAACGTGAGCACCGTTTATGAGCCCGGTGAAGATTCCCAG
CACTAAAACCTATGCAGCGGTCATTTGTGGCCCAAACGAGGAACTACTGT
ACAGTAAGAACCCTAGCCTCAGTCAACGCTAGAGGTTCTTAAGCGCGGGC
GCTATCTGTTCCGTCCTGTTGCAGGCTCCAGTTGATCCCTCTCCTGCGGG
AGCTCGCCGGCGGGGCCAAGGCTCTCGACACCCGCGTCGAGGAGCTCTCC
CGCCAGAGCCACTTCGCCAGGCAGATGGTAGAGCGTGAGGCGCTGCACTG
GGAGAGGGAGCACTTGTCAGGGTGCCGTTTCGACGACGAAGGGGGGGGTT
GCAGTGATGAGACTGACCAGGTCGGAGGGTCTGACCAATCAGCAGGTGCC
GGGGGAACGGTTGATCGATCCGAAGGGGTCGGGGACGTGGCGCCGTCGGG
GATAAGGCGAAAGGAGTTCCCGCTGCAGGCGTTCTTGAGGAAGGGGCCGG
GAGGAGAGGGTAGTGAGCAAGGGTGGGCAGGGTCTGACTTGCCGGAGCTG
GTCAGAGAGGAGCTGTTGCATCGGTTCATCGTTGGTGAGCTAACGAGTCA
CGGCAGCACCGCAGTACCACCGAATTTGATCACGCTATGTGCGCCGCGAG
GGATCTCAGCTTTGGTAGGAGGTTAGTCAAAGCTCGAATAGGTGTTGATG
GCGACGCAAATCCAGGTCAAACGCGGCACGTACGCGGCTGGTTCGCAGTT
ACCTCGCAATAGCCAGTTACGGCTGGTGTGGTTTTCAAGTTTCGAATGCC
CCGGGCTGTGGCCGTGTTGTAGCTCTTCGATGGCCGGAAGTCAAGATGAT
ACCCAGCACGTGAAGCGAAATGTCTGGTTTTGCGTGCCCCCGCGAGCAAC
CGGTGTCTAGGGTGTGCGACATGGGCCTATCTTTGCCTCCGACGGAAACG
TCCAAGTTGTCCCCCACGCGTTTTCCCGCAAGTGTTGGTGGCACCTCTAC
TGTTTGATCGATCCTAGACACGCACCCGAAAAGCTTTCTTGAGACTATGG
GTTGCTTCAGAACGTGACAATGAAGTGCGTCGACCATCTCTTTTCATCCT
TTTTGGCGCGTTTTACGTCTACCAAAGGCGGCACTCAAGCCCCCCCCCCC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCACCGC
CCCTCGCTCGTGGCCCCACCCCTGCTCCTGCGACACCGTCTCGGACATGG
CATCGCAGCAAATACCGGCAACTCGCCGTTGTCCTACGCAAACCTGCGGC
TCCTGATGCGGCAAGTGGACGGGGGCGATAGGAAGTGGTCGATTTCACTA
GAGGGTGGCTACTACTTGCGTCGAGTAGGTGAGGCTGCGTGAACGCCAAC
ATGTGGTTTTCCAGAAAGGACGAGGTGGAATTCTGCCTTGGCTCTTTGTT
CGCTGGGTGATGAATGCTTGCGGCTGCTGGCTAGGGCTTGCCCCATGCCG
TGTTGTAGCAGGCTGTCCATCCATCGTAGCTGTTCTTGCTGGGAAGGTGT
AGTTGTCGTGTCGTGCGTGTAATCACCTTCTGTTGTTGCTTTTGTCGTCG
TCGTCGTCGTTGTTGTTCTTATTTACAATGATGTTGATGTTGTACATCGG
GGTCATAATCTTTGCAGAGGTTTCTTTACGATTCAAGTGTTGCTCATATA
CCGCTGTGTTTGCCCCGGTTTGAGCATGCCGTCCCGCGGTCGCAAACCCA
AGACATTATTCAGAGTTTGCTTCTTGTCCCATCGCCCCACCGTGCTCACT
TCCATGTCTTCTCAGTCACAACAATTGCACAGGTTTGTCTTATTTTCTGT
CGACCCATCCACCGTTCACATTCCCGTTGTTACCCGTCTTGGTAATGTCG
AACACGGATTCATGCTTCGACGACGGGCAGGCTCTGCCATAACGACGGAG
CTGAGGGTCGTAGATCATGACGACCGCATGTTGTTGCCCTGTCTAGGACC
CGACCTACTACCCCCACACTTCGCATTACATACGACTGAAGTACAGTGGG
GGACCCTCAGTAGTGCCTGTATGGACCAGACGACCACACCGGCACTTTTC
AGAGGGACTGGCACTTATGCGAATAGTGCCAAAACCGGCACTATGGAGGG
CTGGTGGAGTAAACCGAGGGGGCCGCAGAAGAAAAATGTTTCGCGGCACG
CACGTATTTCGTTGCGGGTTGCCATTTCTGCTGCAATCAACGACTTGGAA
CTCGGAAGTTGTGGCACGGTGCGATATGTATAAGTATCTCTCTACATTTC
CCCCACTACCAAACTATTTGTCAAGCCCTCGAAGGCACAAAGTTGGTTGA
CCTTGAGCACATGCAGTTTGTTTCGAACAAAGTAAATTAACACATCTTGA
CCAGAACAACAAAAAAGTGCTATTGATAGCATCTTCCATCTACAATCAAG
CACGCGGGCAGAGGGAAGGGTAAATAGACACCAACAAACAAGCACAAGAG
GAGTTACAGTTCATCACCCGCAGCGCACGGCATCGTGTGCCTCTGCGTCG
CAAGCTATAGGGCTCCAGCAGTACACTTTTGTGCCACTCTCGCTGCGGTT
GTGCGTGTGTGTGTGGTGTGAAAACTGCCGAAACGGCACTATTGAGGTTT
TCAGTTTTCAATGGGGCTAAACCTGCACTATTGATGGCGTCTCACAGAGT
AGTGCCGGTACCGGCACTGCCGCGGGTTCTGTCTGTGCAGAGAAATTTCA
TCGGCACTATAGCGGGCACCGGCAATATTCAACCGGCACTGCTGAGGCCC
CCCCACGATCTATGTGTCGTGCGCTCGGGCAACATTCTCCGAACACGCAG
GCGACTTGCTCCGCATTGAGCAGAGCCCTGCGGACGGCGGAATCATAGTA
TCGGGCCTCGAAGGTAGGGTAGTCTCGGAGCAAGGCATAGTGCGACACTC
CACGGATGCAGCCACCACACCGTGGGAGATGGTGGTCAGCCCTTGGGGGG
AAGGAGGTAGCATTGCGTTGGGCGGAGAGGGTGATAGTGGCCATGGGGAG
GGAAGGGCGACAGAAGCGGGGATGGTGCTCTTCAACGTGGCTGCGGGGGC
GCGGCTGCACGTCAGGTGAGCGAGCGGCGGTTTTGTGAGCGTGGATGTGT
TGTGGGTGTGTGTTGAGGTGCGAGAGAGAGGCCAAGCTCAGGCTGTGTAT
ACGGTTGGTGTAGATTGTTTATCTTCACACTTAAGTGTGGGCAGAAATGG
AAAACTTATTTGTGAACGTTGCTTTCTTTCGTCAGAGCGTTTTCATCGTG
CATCCTTGAGCCCTTTCGACATGGCGCACCACCTTATCTTGGGCGGAGTC
TTTCATGTCTCTTGTCTCTTGGCGACATGTAGAGAACTTTCACTGTACGC
GCCGGACCGTTGTGTCCGTTCGGCGATTTAACGTCTCGTTTGATTTTCGT
GTTGGCACATTTTTTCACCGTCCCGGCATGACGAAACGCAGCAGCAAGAC
TTGGTGTTGCCGTCTCTCGCGACCTTTTCTCCGTACATACGCCTCTCCCT
TTGCCCACGGCGACACCCATTTGCAATAATCTTGCCCTTTCGAAGGCGAA
AAAAGGATGGGGATCGCTTTCAGCCAGCATGGCGCGATAGGCCCGCGAAG
CTCAAGGATTTCCTTCGCGGGCAAGGGGTGCCGTTACACCGCAGGGACGA
AGTGGCCTTAATCTGCGACCACCACGACTCGGTAAGGAGAAGAGGTTCGC
CGTCAAAGCACTTTTTTTTGTTAGCAAGTGCCATTTGGTGGATGCGTGCG
TGTGTTGTACGACGCCGTGCAGCGCGAAGTCAACACCAGTCCGAAGAGCT
GCTTGTGTACGTGTAGCTTTCCATCTCCGCAACTTTTTGTTGGTTTTCTT
GTAAGTGTCGGAGGGATTCAGTCTCGGCACCGCTTACAGGGATTCACTCT
GTGCAGGCCGGCTTTGTTTGTACTACCGGCCACACTCTCACGGCAGTCTA
CGAAGCATTCATTCCACCATATGATAGAAAAGTGCTGCCTATCTTCTTGT
CAATCAATCTCCTTTTCCCTGACCAACCGCCCTTTGCCTCCGGCGCGTCA
CCCTTGCCGCTGCACCTCTGTTGTCTCGTTCGGCCTATCCTTTCGTCAAC
TACCACGCGTTAAGGTTATCGCGGTGTACCCATCCTACCCCGGGTTCGGG
GTTTGCCAGGATAGCACCGGGGAGGAACCGATTCGCGTAAGGATAGCGGG
GACGCCCCTGTTTTGTCCCCGCCCGGAGGATCGGGGAGGAGCACCCGCCT
CATGACATGGCATGGCGTCTTCATTCGATTGTTGACATTTGTGGACAAAC
CAAGGGTCCGCGGGGACTAGCAATCGGGACACGTAGCTCTGACTGGGGCA
GAAAAGTATACAATGACCGACCATGGAAATACGAACGAAAGGAATCGAGA
AATCGCGTTGCGGGCCTTTGCGACGTGCACGATTCGTTTTCTGTTGT back to topCoding sequence (CDS) from alignment at Scaffold_106:261283..266729+ >EsuBft1154_8a-0001 ID=EsuBft1154_8a-0001|Name=EsuBft1154_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1215bp|location=Sequence derived from alignment at Scaffold_106:261283..266729+ (Ectocarpus subulatus male Bft15b)
ATGGCGTGGCACTCGGATCCTTTCGTGCGGCCGTTGCTGGGGGCCCACAA
ATCGGAACTCTTGGAGTTTTTGGTCCGGGGGGGGCATGCCTGGAGAGAAG
ACGGGAGCAACCAGGTGGCTAAGTACGCCAGGAATCGCGTGCGGCTCCAG
TTGATCCCTCTCCTGCGGGAGCTCGCCGGCGGGGCCAAGGCTCTCGACAC
CCGCGTCGAGGAGCTCTCCCGCCAGAGCCACTTCGCCAGGCAGATGGTAG
AGCGTGAGGCGCTGCACTGGGAGAGGGAGCACTTGTCAGGGTGCCGTTTC
GACGACGAAGGGGGGGGTTGCAGTGATGAGACTGACCAGGTCGGAGGGTC
TGACCAATCAGCAGGTGCCGGGGGAACGGTTGATCGATCCGAAGGGGTCG
GGGACGTGGCGCCGTCGGGGATAAGGCGAAAGGAGTTCCCGCTGCAGGCG
TTCTTGAGGAAGGGGCCGGGAGGAGAGGGTAGTGAGCAAGGGTGGGCAGG
GTCTGACTTGCCGGAGCTGGTCAGAGAGGAGCTGTTGCATCGGTTCATCG
TTGCAAATACCGGCAACTCGCCGTTGTCCTACGCAAACCTGCGGCTCCTG
ATGCGGCAAGTGGACGGGGGCGATAGGAAGTGGTCGATTTCACTAGAGGG
TGGCTACTACTTGCGTCGAGTAGGCGACTTGCTCCGCATTGAGCAGAGCC
CTGCGGACGGCGGAATCATAGTATCGGGCCTCGAAGGTAGGGTAGTCTCG
GAGCAAGGCATAGTGCGACACTCCACGGATGCAGCCACCACACCGTGGGA
GATGGTGGTCAGCCCTTGGGGGGAAGGAGGTAGCATTGCGTTGGGCGGAG
AGGGTGATAGTGGCCATGGGGAGGGAAGGGCGACAGAAGCGGGGATGGTG
CTCTTCAACGTGGCTGCGGGGGCGCGGCTGCACGTCAGGCGAAAAAAGGA
TGGGGATCGCTTTCAGCCAGCATGGCGCGATAGGCCCGCGAAGCTCAAGG
ATTTCCTTCGCGGGCAAGGGGTGCCGTTACACCGCAGGGACGAAGTGGCC
TTAATCTGCGACCACCACGACTCGGTTATCGCGGTGTACCCATCCTACCC
CGGGTTCGGGGTTTGCCAGGATAGCACCGGGGAGGAACCGATTCGCGTAA
GGATAGCGGGGACGCCCCTGTTTTGTCCCCGCCCGGAGGATCGGGGAGGA
GCACCCGCCTCATGA back to top
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