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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 746128.CADAFUBP00002101 |
| ProteomeId | EsuBft1180_3 |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | IPR006140 |
| Protein domains | IPR029753 |
| Protein domains | PTHR10996 |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SignalP-noTM |
| Protein domains | IPR016040 |
| Protein domains | SSF52283 |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SSF51735 |
| Protein domains | IPR006139 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | d-3-phosphoglycerate dehydrogenase os:methanocaldococcus jannaschii (strain atcc 43067 dsm 2661 [Automatic annotation] |
| Nb exon | 7 |
| Max annot lvl | 4751|Fungi |
| Length | 1703 |
| Hectar predicted targeting category | signal peptide |
| Evalue | 1.7e-72 |
| EggNOG OGs | COG0111@1|root,KOG0068@2759|Eukaryota,38GJA@33154|Opisthokonta,3NVPH@4751|Fungi,3QN9K@4890|Ascomycota,20G9M@147545|Eurotiomycetes,3S67S@5042|Eurotiales |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| KEGG rclass | RC00031 |
| KEGG ko | ko:K00058 |
| KEGG Reaction | R01513 |
| KEGG Pathway | ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230 |
| KEGG Module | M00020 |
| EC | 1.1.1.399,1.1.1.95 |
| Description | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain |
| COG category | E |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko04147 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0007399 |
| GO | 0016616 |
| GO | 0009069 |
| GO | 0051287 |
| GO | 0055114 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1180_3a-0001 ID=EsuBft1180_3a-0001|Name=EsuBft1180_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1703bp|location=Sequence derived from alignment at Scaffold_106:178870..183758+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TGCATCTACCACTGTAAAACGATAGAGCGTTGTTTGCATTGCAGCTGCAA
CCGATGCGATCCACAGGCGTAGCCCTCGCGTTCCTCGCGGTACGCTCCAG
GCTTACATGGCTCGGTCCACGTCAGGGTATATACGGAGCTCTTCGTGCAA
CAGACACGACACGAAGACACATTTTGGTCCTAGACCCGGCGTCCCCTGCA
TACCAGGGGATTGAGACAGCTGGATACCAGGTGACCGCCGCGCATGGTTT
AAGCGATCCCGAGCTTGAGCAAGTCCTCCCAGCGTATGACGCGGTCGTGG
TTCGTTCGGCCAATCAAATCACTCGCAACATGCTAGTCGCGAGTCCCCGG
GTGGCGATAGTAGGGCGTGCGGGGTCTGGGGTGGACAATATCGACCTGAA
GGCGGCCTCCGAGCTCGGGGTACCTGTTGTGAATGCTCCCACGGGAAACT
CAGGGTCTGTTGCAGAGTTGGTAATGGGCTTGATGCTCGGCGTGTCACGG
AGCATTTCGCCAGCGCACGACACCACAAGACGCGGGGAATGGGCTAAGAG
CAATTTCACTGGCCGCACACTCAGCGGAAAGACACTGGGAATTGTAGGCT
TCGGTTCTGTGGGCATAGCGCTGGCAAGACTGGCCGTGGCTTTCGGCATG
GTGGTAATGATAGCAGAAGGGTCGAGTCCGACGCCTTGCTCGGGGAGAGC
TGAGGAAATCGACCCACGCGCATCCGAGAGGGAGGGTATGGCAAGCCAAG
CAGGGGTAACGTTGCCTCCTCTGCCGCTCGACGAACTCTTGTCGAAGAGC
GACTTTTTTTCTGTGCACTGCCCGCTGACGGCGGACACGAAGGGCCTGAT
TTCTAGACGCGAACTGGCCCTGATGAAGCCATCTGCCGTGGTTATCAATG
CGGCGAGAGGAGGAGTGGTGGACGAATTAGCGCTACTCCAGAGCCTGGAG
CAGGGGCATTTGGGAGGCGCAGCCCTTGATGTATTCGAGTGTGAGAGGTC
CCCTCTTCAGGATCATATCGTCAATCTGTGCAGACTGCCGAATGTGCTGT
GCACTCCGCATATCGGAGGCTCCACGGAGGAAGCCGGAGAACGCGTTTTG
GCTGAAGTATGCGGTGCTGTAGTCGATTTCTTCCAAGGAACTCTGCCGGC
ATCGAAAATTGTCAACGGGGCCCCCGACATGACTGTGCGCTTAAAAAGGC
TTGGCAGCTCATCGTAGCACGCGACAGTCACTACGTATTCGTAAAAAGAA
TGGATTCTGCGCCAGCGCTTGTATGCCGAGATTGTGGGGAAAGGGTGGGT
GTTCGTCCGAAGCCTTCATGGCATATTCGATCTGTTGGTTTGGTCTGGCC
ACGAAGCCTACCTCTATGATGTTCTAAACACGAAGTTTCTTGCCTTTGTG
CCTATTTGTGCTGCCCGGTGTTGCTGATTTTCTTACACCCCCGGTTGCTC
ATGTCCTCTGCTTCCGTCACGTACTCACTGTATTAAGACTGTTTGTGTAT
GCCTCTGATCGTTGATTCACACCCGAGTTTTCCGTGTCATCGTGCGACGT
GGTCGCGTGCGCGTGCGGTTGCGTATGTGTGTGGTGTGCCCTGGCCCAGA
CAAACCCAGTTGGGGAGAGGTGCCTAAGCACACGCACCCCCAAAGACAAG
AAAACGCAAAACAGTAGCAGGGGGTAGGGGGAGGGGTACGCAAAGGTGGT
GAG back to topprotein sequence of EsuBft1180_3a-0001 >EsuBft1180_3 ID=EsuBft1180_3|Name=EsuBft1180_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=387bp
MRSTGVALAFLAVRSRLTWLGPRQGIYGALRATDTTRRHILVLDPASPAY
QGIETAGYQVTAAHGLSDPELEQVLPAYDAVVVRSANQITRNMLVASPRV
AIVGRAGSGVDNIDLKAASELGVPVVNAPTGNSGSVAELVMGLMLGVSRS
ISPAHDTTRRGEWAKSNFTGRTLSGKTLGIVGFGSVGIALARLAVAFGMV
VMIAEGSSPTPCSGRAEEIDPRASEREGMASQAGVTLPPLPLDELLSKSD
FFSVHCPLTADTKGLISRRELALMKPSAVVINAARGGVVDELALLQSLEQ
GHLGGAALDVFECERSPLQDHIVNLCRLPNVLCTPHIGGSTEEAGERVLA
EVCGAVVDFFQGTLPASKIVNGAPDMTVRLKRLGSSS back to topmRNA from alignment at Scaffold_106:178870..183758+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1180_3a-0001 ID=EsuBft1180_3a-0001|Name=EsuBft1180_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4889bp|location=Sequence derived from alignment at Scaffold_106:178870..183758+ (Ectocarpus subulatus male Bft15b)
TGCATCTACCACTGTAAAACGATAGAGCGTTGTTTGCATTGCAGCTGCAA
CCGATGCGATCCACAGGCGTAGCCCTCGCGTTCCTCGCGGTACGCTCCAG
GCTTACATGGCTCGGTCCACGTCAGGGTATATACGGAGCTCTTCGTGCAA
CAGACACGACACGAAGACACATTTTGGTCCTAGACCCGGCGTCCCCTGCA
TACCAGGTACACGATATTGTTGCCCCACCACGCAACCACGGGCGCCTCAA
GTTTGTTTGTTTGAGCCGGATTGGTCTTGATCTAGTGCCATAGCTTCTGG
GATCAACCTCTGTTGCGATATTGCAGTAGACTCGATAGATTCCTAAAATG
CGGTGTTCAATTCCTTCATACCATGGCATCTGGACTCGGCTGCAGGAACG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGGCGGCTGTGTCTATGCTTACGTCCCACACCCTTGAATGCAGGAATGCA
GGAGAGAGATAGCGGGTGGTTTTATCTTTTGTGCTTGCGCACCCTTGCAT
GCCTAAGAGCACCAAGGCTGCTTCCACATTCCATTGGCCACACGATCACA
CAATCTAACTCATCTTTGGCAACCTATGTTCTCGCTTTGTTGTCGTAATC
TGGGCAGGGGATTGAGACAGCTGGATACCAGGTGGGTTTGACAATGTTCA
CCGTAGTCTGCTAAGAGTTGCTCCCCTTTCGTCGAGGCGCACCCCCGCAC
ACACAACAGCACGAAATGATGGGCAGCGCTGACTACAGGGGTTACAATCC
TGGGGTTAATTACGAGGTCAAACAGCGCAAACGAGTTGAACCCCGGCTGT
ACGTACTTTAGTTAAGATGTGCATCATATCCACTCTGCGGCAAGTCAGCG
CCGACTTGCAGCGTAGTGCTTATGCTCTACACCTTAACATGTAGAGATTG
TTCAGAAAGAATTTCGCCTGCACGAGGTAACCCCAGGCGAACATGTTTGT
AGAAAGTAAACATAACCTAACCGAAAGACTATACCCGTTCGAGATATCTA
TAACCTCAGTCGAAAGGGATGTGAAGCAGAAAGTGGATTGAAACCGATTG
GAGACTCTGCTCATTTTTGAGTTTGTGTAAGCCTAACACTGAGTTATCAG
TCTGTATCAGTGATGCCAGTTGGAGCTAAGAACAAAAACATCTGTATAGG
CGGATACATTTTTAATGTAGCCTTCACAGGGAACATGGCGCAGTGTCGTT
TGACAACTTGCTGTTTTTAGAAAGTACCTCTCTACTGTTTTAGGCGACTT
GAATAGACTACAGTATGTACAGCAGTAGGACTGTTGCACACCCACCACAA
AAAAAAAAAAAGTTGGAGTTGTATTGTAGAATTGACTGTATGTAGCTGTT
TCCCGCTTATTTTGAAATCTACGATGTTATGTTGTTCTTCGTGTGTGATG
AGTGTAGGTGAAACGCGTTGAAGGGGGTTTTATAAGTACCATATTTGTTG
CCCATGGATGTTGCTTTCAAGTCACATACCGTGGCACTCCTCAAAATTTG
GAGGGCATGAACTGCCGTGAGCCCGCAAGCGACCCCGACTGCGTTGTCTG
CCGTTCCTAGGTTGCCTCTGCCCAACATCGCGGGTGAAACAGAGATAGAG
TAGCTATGTGCGTGTGGGTGGACAGAGCGGTGTTCTAGACATATAGGCCT
ACCCTCCCGGGTTCTTCTCCTATGCTTGTTTTTGCGATGACGAAACCAAG
TATGAACCCTGGTGCACTTTGCATCATGTTTGATGACCCCTAAAGTTCGC
ACATGACACAGCCTGTGATGTCGCATATTGAGTGTGGCATACATTTCTCG
AACTTGACACGTAAAATCCGAGTAGGTTTCTGGCTGGATGGTACAGCAGC
TGGACGACCACAGAACTCATTGTGTACGGTTTTCCGTGTTCAGCAATCGG
CTGTGAAGCGTTCTCTCTGTTGATTCCACTGCCTGTTTTTCACGTTGTAA
CGTGTGTCTTCGCCTGGTCGTAAGATTTGCCGGCCAGTAACTTGATGGCC
GAAGTTGAACATTGACTGCACCATGGACCAATTATTGAGACTTTGCTGCC
GTTTGCATGACCAATGTCATGGCGCCGTTAACCCTCTTTGTCATCAAGGT
GACCGCCGCGCATGGTTTAAGCGATCCCGAGCTTGAGCAAGTCCTCCCAG
CGTATGACGCGGTCGTGGTTCGTTCGGCCAATCAAATCACTCGCAACATG
CTAGTCGCGAGTCCCCGGGTGGCGATAGTAGGGCGTGCGGGGTCTGGGGT
GGACAATATCGACCTGAAGGCGGCCTCCGAGCTCGGGGTACCTGTTGTGA
ATGCTCCCACGGGAAACTCAGGGTCTGTTGCAGGTCAGCCGACTCGAGTG
CAGCACGGAAAGCGGCTTGCTGATCGCTACTTCCTAGAAAAAATAGCTCC
GGTGCTTTGGGTTGCATCTCGTAGATATAACCGGCAATACGTAGGCAGAT
GAACCGTGAATTTGCTGTTGCGCGATTCTGAGTCTCGAGCAAGCAAGACC
TAGAATATGAATATCAATGATATGATGCATTTAAACGCACCAATCACGCG
TTCTCCGTTGATCTTGTCTCCGCAAGAGTTGGTAATGGGCTTGATGCTCG
GCGTGTCACGGAGCATTTCGCCAGCGCACGACACCACAAGACGCGGGGAA
TGGGCTAAGAGCAATTTCACTGGCCGCACACTCAGCGGAAAGACACTGGG
AATTGTAGGCTTCGGTTCTGTGGGCATAGCGGTACGTGCATACCTATTGC
TCCATTTTTCTTGCTCTCTCGTCGAGTCCCGCCAGAAATCATAGCCTAAA
ACAGATATCCTGCCCCCGCTGGGTTTCCAGCTCTACCTCATTGTTGGCTG
TTGTCGAAGTTCAGGATATGAGGTCAGGCTCATACCCCTCACTTTTTTTT
TCTTGCAGAGTTTCGACATGGTCGACGTCAGGGTTCGAAAACGCGACGAT
CGATCAAAATCGCGTGCATCAAGCGGTCGCAGCATCTTGCAAATGGCTGT
TTTTTGTTGCTTTCCGCTTCGAGGTTGGTATCATGTAGCACCACACGCTA
GCTTGCCAATTTTCGTCTGCTGCCCCGGCCGGGACTGCCGGCACCATGTT
AGTGCTGAAGTCCAGACAAGGGTCGTGTTTGTCTCCGTAGGTCAGCCTCT
CTAACGTACGCCGTGCGTGACGTCGAAAAGAAAATGTCAACTTCCACCGA
CCCTCAACGTCCCTGCAACACATCAGCTGGCAAGACTGGCCGTGGCTTTC
GGCATGGTGGTAATGATAGCAGAAGGGTCGAGTCCGACGCCTTGCTCGGG
GAGAGCTGAGGAAATCGACCCACGCGCATCCGAGAGGGAGGGTATGGCAA
GCCAAGCAGGGGTAACGTTGCCTCCTCTGCCGCTCGACGAACTCTTGTCG
AAGAGCGACTTTTTTTCTGTGCACTGCCCGCTGACGGCGGACACGAAGGG
CCTGATTTCTAGACGCGAACTGGCCCTGATGAAGCCATCTGCCGTGGTTA
TCAATGCGGCGAGAGGAGGAGTGGTGGACGAATTAGGTGCGCGAGTGCTG
TCTCTGTGGGATGCATTGATTGTGTAATTTTTATCAAAGGCCTTCGGATA
GGGCACCCAGATAGCGATGTTCTGTACCTATGTTTCCAACCGGCGTGCTT
AATATTGTCGCGTTAATTGCTCCCAGCGCTACTCCAGAGCCTGGAGCAGG
GGCATTTGGGAGGCGCAGCCCTTGATGTATTCGAGTGTGAGAGGTCCCCT
CTTCAGGATCATATCGTCAATCTGTGCAGGTGACTCTAATCGTGTTTCTT
GCCGTATGTTCGCCTACTTCCTCCCCGCGAATGTGAAATGGACAAAATAG
TCTGCGGCCTTTCCGGCTAACCAGATGAAAGGGCGTGCTTCCGGTAATGG
TTCACAGTGAGCACCTTTGTGGTTGCTGTAGAATACCCGCCTCTTCGCAC
CCTTGATCGCGGCCGATGCAATGTGCCAATCAGACGCTTTTCCCACAGCC
GTCCTAGTTCCTCGTGCACTTCCGATACTGACTGGGTTGAGTTCGACGCC
CACGTGCTGCCGTTGGCAGACTGCCGAATGTGCTGTGCACTCCGCATATC
GGAGGCTCCACGGAGGAAGCCGGAGAACGCGTTTTGGCTGAAGTATGCGG
TGCTGTAGTCGATTTCTTCCAAGGAACTCTGCCGGCATCGAAAATTGTCA
ACGGGGCCCCCGACATGACTGTGCGCTTAAAAAGGCTTGGCAGCTCATCG
TAGCACGCGACAGTCACTACGTATTCGTAAAAAGAATGGATTCTGCGCCA
GCGCTTGTATGCCGAGATTGTGGGGAAAGGGTGGGTGTTCGTCCGAAGCC
TTCATGGCATATTCGATCTGTTGGTTTGGTCTGGCCACGAAGCCTACCTC
TATGATGTTCTAAACACGAAGTTTCTTGCCTTTGTGCCTATTTGTGCTGC
CCGGTGTTGCTGATTTTCTTACACCCCCGGTTGCTCATGTCCTCTGCTTC
CGTCACGTACTCACTGTATTAAGACTGTTTGTGTATGCCTCTGATCGTTG
ATTCACACCCGAGTTTTCCGTGTCATCGTGCGACGTGGTCGCGTGCGCGT
GCGGTTGCGTATGTGTGTGGTGTGCCCTGGCCCAGACAAACCCAGTTGGG
GAGAGGTGCCTAAGCACACGCACCCCCAAAGACAAGAAAACGCAAAACAG
TAGCAGGGGGTAGGGGGAGGGGTACGCAAAGGTGGTGAG back to topCoding sequence (CDS) from alignment at Scaffold_106:178870..183758+ >EsuBft1180_3a-0001 ID=EsuBft1180_3a-0001|Name=EsuBft1180_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1164bp|location=Sequence derived from alignment at Scaffold_106:178870..183758+ (Ectocarpus subulatus male Bft15b)
ATGCGATCCACAGGCGTAGCCCTCGCGTTCCTCGCGGTACGCTCCAGGCT
TACATGGCTCGGTCCACGTCAGGGTATATACGGAGCTCTTCGTGCAACAG
ACACGACACGAAGACACATTTTGGTCCTAGACCCGGCGTCCCCTGCATAC
CAGGGGATTGAGACAGCTGGATACCAGGTGACCGCCGCGCATGGTTTAAG
CGATCCCGAGCTTGAGCAAGTCCTCCCAGCGTATGACGCGGTCGTGGTTC
GTTCGGCCAATCAAATCACTCGCAACATGCTAGTCGCGAGTCCCCGGGTG
GCGATAGTAGGGCGTGCGGGGTCTGGGGTGGACAATATCGACCTGAAGGC
GGCCTCCGAGCTCGGGGTACCTGTTGTGAATGCTCCCACGGGAAACTCAG
GGTCTGTTGCAGAGTTGGTAATGGGCTTGATGCTCGGCGTGTCACGGAGC
ATTTCGCCAGCGCACGACACCACAAGACGCGGGGAATGGGCTAAGAGCAA
TTTCACTGGCCGCACACTCAGCGGAAAGACACTGGGAATTGTAGGCTTCG
GTTCTGTGGGCATAGCGCTGGCAAGACTGGCCGTGGCTTTCGGCATGGTG
GTAATGATAGCAGAAGGGTCGAGTCCGACGCCTTGCTCGGGGAGAGCTGA
GGAAATCGACCCACGCGCATCCGAGAGGGAGGGTATGGCAAGCCAAGCAG
GGGTAACGTTGCCTCCTCTGCCGCTCGACGAACTCTTGTCGAAGAGCGAC
TTTTTTTCTGTGCACTGCCCGCTGACGGCGGACACGAAGGGCCTGATTTC
TAGACGCGAACTGGCCCTGATGAAGCCATCTGCCGTGGTTATCAATGCGG
CGAGAGGAGGAGTGGTGGACGAATTAGCGCTACTCCAGAGCCTGGAGCAG
GGGCATTTGGGAGGCGCAGCCCTTGATGTATTCGAGTGTGAGAGGTCCCC
TCTTCAGGATCATATCGTCAATCTGTGCAGACTGCCGAATGTGCTGTGCA
CTCCGCATATCGGAGGCTCCACGGAGGAAGCCGGAGAACGCGTTTTGGCT
GAAGTATGCGGTGCTGTAGTCGATTTCTTCCAAGGAACTCTGCCGGCATC
GAAAATTGTCAACGGGGCCCCCGACATGACTGTGCGCTTAAAAAGGCTTG
GCAGCTCATCGTAG back to top
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