Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft1009_11 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Length | 195 |
| Hectar predicted targeting category | no signal peptide or anchor |
| Ec32 ortholog description | DEAD-box family helicase |
| Ec32 ortholog | Ec-19_005410.2 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1009_11a-0001 ID=EsuBft1009_11a-0001|Name=EsuBft1009_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1951bp|location=Sequence derived from alignment at Scaffold_106:106068..108178- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCAGGAGCGCCACAACCCGCAGCACCACCGCAACAACAACCGCGAGGG
TCGAGTGTTGGACAGACGGGGTGCGTGCTGCGTTGTGCTGAGAACCAACG
CGCGCGCCGGCAGCACAAACACGCACATCACGTGCTTTCCGGCGTATGAC
GCGAGGCCAGACGCCGCGATGTGGTGACATGCCAAGCAATGCCCCGCATG
AAGCCACCTGGGGCTGGGCTGCAACGGCGGCGGCGTGAACCTCTTGTTTG
AAGCAAACGACCTTATCATCAACCAGAGCGCCGGTTGTGGTTGTGGCATC
ATCATCATCATGACCGACCACGAAGCAACGGACATGGGATAAGGGCGTCT
TGGCGACGGCTGGCTGTGTAGCACACGTTGCTGAGCACTGGTGGCGGTAA
AGCTAGGAACAGAAGCAGAGGTAGCAGCTGTCACCCCGTTTCGGCTTTTC
CAGGTGAATATGTTGGTGCTACAAAGCAGGTGTAAGGCAACAGCAGTGAG
TTGCGGCGCTTAGCCTTCGTCGGGTGTATCGTGTGCGTGCCTCTCTGTAC
GCTGCTTAGCACGCCATTGATGTGACGGCTGCTGCTGTACTGCTGTAGTG
TGCGTACATAACGGGTACCGAACGTTTCATTATTGACAGATCAACAGGTG
CTGTCCTGCAAAAAAAAAGTCGTCACGGAGTAAATCGGTCTTTTCTCGCA
AGCATTTCACGATAGCAGCAACTTGACAGCAGTGTACCAGATAGCTCGCA
GAGGTGGACCCCCGAAGACGAAATCCGTCCGGAAGCTGTATCGCTACATT
CATCAAGCTATGACAAGGGGTCAAACGCCGTTTCTTCCCACGTCCAACCT
CAAATCCTTTCTTTTGTAGCAATTGTATCCACGCAGTCCCTTCCGAGGAA
CTGGAGATCTGTGAAGGTCTGCTTGCTGTACATTGGCAACCTTGTCGTGG
TTCTTTCCTTTTGTCAACGTTCAACTGCAACCTTCAGCAGTATGTAGCAG
GTTGTTTGTTCTTACCTCCTGGTACCGCAGTTTCATGTACACAGCGCGAG
TGTATTTCGTACTCGTGCAGCAGTAGTTTCAGGGTTTATCATCGGTAACG
CTCGTTGCGGCGGACACAGGGTGCAGGCTTGTATGGTCGTGAAGACGTGG
TGCATCGCTGAGGCGGGTCAATGCAGTTGCTGACGTTTTCCCTCCTGGAT
GTTCTTTGTGCCCCTTTCCTCCCCTTGCTCCATCCGTGCATCAGGTACAG
TATGGGGCCCTCTATAGTGCCGGTATGTGTTCAGAGAGCAAAGCGGCACT
ATACCGGGCACCGGCACTATTCAGAGTACAGAAAGCCTTGATATTCCGGT
GTGTGCGAGCCGAAAACACCGGCATTATACCGGCAACCGGCACTATTCAA
CCGGCACTATATCGGGCCACCCACTGTAGTAGAGTTGCTGCATTTTGTTT
ACGACGCATATCGATGGCACAACGGCCGGACACACTTTTTGCAACTGTCC
GCGGTCCAACCATGGCACTACAAAGGGCCGTAGAGAAATTCGACGCTTAG
ATGTGTTCACTTTTTCCTTTTGGCCTCTAATGAAAATGCTGAATGGCAAA
GCACATGGCATGTTCTCGCTATGGATGACAGGTGTTTGTACAACCGAGGG
CTGGACATCAAGACGGGGTCGAAGGCTGATTTGGCGGTTCCTCCGTCGAA
CAGCTACCCAACCTATGGGGTGCCAGGGCAGTGCTTGAAGACGTGGTGTT
AATCCTGCGCGATGTAACGGTGATTCAATGCGAACCTCTTGGTGATCATT
GGCAGCCATTTTGCATCGCTGCGGAGAACTGTGGTGACGACCGGAAGATG
TAAACGCTTGGTTACTGCACAGGCACATTCGGAGAGCTAGGGTTCGTTTT
CCATGCTTATTCGTTGCTATTTCAGCGAGCGCCCCTTGGCGAGCAACTGC
T back to topprotein sequence of EsuBft1009_11a-0001 >EsuBft1009_11 ID=EsuBft1009_11|Name=EsuBft1009_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=58bp
MQERHNPQHHRNNNREGRVLDRRGACCVVLRTNARAGSTNTHITCFPAYD
ARPDAAMW back to topmRNA from alignment at Scaffold_106:106068..108178- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1009_11a-0001 ID=EsuBft1009_11a-0001|Name=EsuBft1009_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2111bp|location=Sequence derived from alignment at Scaffold_106:106068..108178- (Ectocarpus subulatus male Bft15b)
ATGCAGGAGCGCCACAACCCGCAGCACCACCGCAACAACAACCGCGAGGG
TCGAGTAAAGGCACAGGGAAATTCGTCATAAACGGAACTGGGACAATGGG
CAGGGATGAATTTGTTTAATGCGACACCGCTGATTGGGCGAAACCACCCC
ATTTGAACGAATCTGATTGGGAGTTCAATGCGGGTTTTAAATGCGGCACT
TGGAATTAGTACAGGTGTTGGACAGACGGGGTGCGTGCTGCGTTGTGCTG
AGAACCAACGCGCGCGCCGGCAGCACAAACACGCACATCACGTGCTTTCC
GGCGTATGACGCGAGGCCAGACGCCGCGATGTGGTGACATGCCAAGCAAT
GCCCCGCATGAAGCCACCTGGGGCTGGGCTGCAACGGCGGCGGCGTGAAC
CTCTTGTTTGAAGCAAACGACCTTATCATCAACCAGAGCGCCGGTTGTGG
TTGTGGCATCATCATCATCATGACCGACCACGAAGCAACGGACATGGGAT
AAGGGCGTCTTGGCGACGGCTGGCTGTGTAGCACACGTTGCTGAGCACTG
GTGGCGGTAAAGCTAGGAACAGAAGCAGAGGTAGCAGCTGTCACCCCGTT
TCGGCTTTTCCAGGTGAATATGTTGGTGCTACAAAGCAGGTGTAAGGCAA
CAGCAGTGAGTTGCGGCGCTTAGCCTTCGTCGGGTGTATCGTGTGCGTGC
CTCTCTGTACGCTGCTTAGCACGCCATTGATGTGACGGCTGCTGCTGTAC
TGCTGTAGTGTGCGTACATAACGGGTACCGAACGTTTCATTATTGACAGA
TCAACAGGTGCTGTCCTGCAAAAAAAAAGTCGTCACGGAGTAAATCGGTC
TTTTCTCGCAAGCATTTCACGATAGCAGCAACTTGACAGCAGTGTACCAG
ATAGCTCGCAGAGGTGGACCCCCGAAGACGAAATCCGTCCGGAAGCTGTA
TCGCTACATTCATCAAGCTATGACAAGGGGTCAAACGCCGTTTCTTCCCA
CGTCCAACCTCAAATCCTTTCTTTTGTAGCAATTGTATCCACGCAGTCCC
TTCCGAGGAACTGGAGATCTGTGAAGGTCTGCTTGCTGTACATTGGCAAC
CTTGTCGTGGTTCTTTCCTTTTGTCAACGTTCAACTGCAACCTTCAGCAG
TATGTAGCAGGTTGTTTGTTCTTACCTCCTGGTACCGCAGTTTCATGTAC
ACAGCGCGAGTGTATTTCGTACTCGTGCAGCAGTAGTTTCAGGGTTTATC
ATCGGTAACGCTCGTTGCGGCGGACACAGGGTGCAGGCTTGTATGGTCGT
GAAGACGTGGTGCATCGCTGAGGCGGGTCAATGCAGTTGCTGACGTTTTC
CCTCCTGGATGTTCTTTGTGCCCCTTTCCTCCCCTTGCTCCATCCGTGCA
TCAGGTACAGTATGGGGCCCTCTATAGTGCCGGTATGTGTTCAGAGAGCA
AAGCGGCACTATACCGGGCACCGGCACTATTCAGAGTACAGAAAGCCTTG
ATATTCCGGTGTGTGCGAGCCGAAAACACCGGCATTATACCGGCAACCGG
CACTATTCAACCGGCACTATATCGGGCCACCCACTGTAGTAGAGTTGCTG
CATTTTGTTTACGACGCATATCGATGGCACAACGGCCGGACACACTTTTT
GCAACTGTCCGCGGTCCAACCATGGCACTACAAAGGGCCGTAGAGAAATT
CGACGCTTAGATGTGTTCACTTTTTCCTTTTGGCCTCTAATGAAAATGCT
GAATGGCAAAGCACATGGCATGTTCTCGCTATGGATGACAGGTGTTTGTA
CAACCGAGGGCTGGACATCAAGACGGGGTCGAAGGCTGATTTGGCGGTTC
CTCCGTCGAACAGCTACCCAACCTATGGGGTGCCAGGGCAGTGCTTGAAG
ACGTGGTGTTAATCCTGCGCGATGTAACGGTGATTCAATGCGAACCTCTT
GGTGATCATTGGCAGCCATTTTGCATCGCTGCGGAGAACTGTGGTGACGA
CCGGAAGATGTAAACGCTTGGTTACTGCACAGGCACATTCGGAGAGCTAG
GGTTCGTTTTCCATGCTTATTCGTTGCTATTTCAGCGAGCGCCCCTTGGC
GAGCAACTGCT back to topCoding sequence (CDS) from alignment at Scaffold_106:106068..108178- >EsuBft1009_11a-0001 ID=EsuBft1009_11a-0001|Name=EsuBft1009_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=177bp|location=Sequence derived from alignment at Scaffold_106:106068..108178- (Ectocarpus subulatus male Bft15b)
ATGCAGGAGCGCCACAACCCGCAGCACCACCGCAACAACAACCGCGAGGG
TCGAGTGTTGGACAGACGGGGTGCGTGCTGCGTTGTGCTGAGAACCAACG
CGCGCGCCGGCAGCACAAACACGCACATCACGTGCTTTCCGGCGTATGAC
GCGAGGCCAGACGCCGCGATGTGGTGA back to top
|