EsuBft1009_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1009_11a-0001
Unique NameEsuBft1009_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_106contigScaffold_106:106068..108178 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1009_11
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length195
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionDEAD-box family helicase
Ec32 orthologEc-19_005410.2
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1009_11aEsuBft1009_11aEctocarpus subulatus male Bft15bgeneScaffold_106 106068..108178 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1009_11a-0001-exonagat-exon-87429Ectocarpus subulatus male Bft15bexonScaffold_106 106068..107964 -
EsuBft1009_11a-0001-exonEsuBft1009_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_106 108125..108178 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1009_11a-0001-exonagat-three_prime_utr-79Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_106 106068..107841 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1009_11a-0001-cdsEsuBft1009_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_106 107842..107964 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1009_11a-0001EsuBft1009_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_106 107842..108178 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1009_11a-0001 ID=EsuBft1009_11a-0001|Name=EsuBft1009_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1951bp|location=Sequence derived from alignment at Scaffold_106:106068..108178- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGAGCGCCACAACCCGCAGCACCACCGCAACAACAACCGCGAGGG
TCGAGTGTTGGACAGACGGGGTGCGTGCTGCGTTGTGCTGAGAACCAACG
CGCGCGCCGGCAGCACAAACACGCACATCACGTGCTTTCCGGCGTATGAC
GCGAGGCCAGACGCCGCGATGTGGTGACATGCCAAGCAATGCCCCGCATG
AAGCCACCTGGGGCTGGGCTGCAACGGCGGCGGCGTGAACCTCTTGTTTG
AAGCAAACGACCTTATCATCAACCAGAGCGCCGGTTGTGGTTGTGGCATC
ATCATCATCATGACCGACCACGAAGCAACGGACATGGGATAAGGGCGTCT
TGGCGACGGCTGGCTGTGTAGCACACGTTGCTGAGCACTGGTGGCGGTAA
AGCTAGGAACAGAAGCAGAGGTAGCAGCTGTCACCCCGTTTCGGCTTTTC
CAGGTGAATATGTTGGTGCTACAAAGCAGGTGTAAGGCAACAGCAGTGAG
TTGCGGCGCTTAGCCTTCGTCGGGTGTATCGTGTGCGTGCCTCTCTGTAC
GCTGCTTAGCACGCCATTGATGTGACGGCTGCTGCTGTACTGCTGTAGTG
TGCGTACATAACGGGTACCGAACGTTTCATTATTGACAGATCAACAGGTG
CTGTCCTGCAAAAAAAAAGTCGTCACGGAGTAAATCGGTCTTTTCTCGCA
AGCATTTCACGATAGCAGCAACTTGACAGCAGTGTACCAGATAGCTCGCA
GAGGTGGACCCCCGAAGACGAAATCCGTCCGGAAGCTGTATCGCTACATT
CATCAAGCTATGACAAGGGGTCAAACGCCGTTTCTTCCCACGTCCAACCT
CAAATCCTTTCTTTTGTAGCAATTGTATCCACGCAGTCCCTTCCGAGGAA
CTGGAGATCTGTGAAGGTCTGCTTGCTGTACATTGGCAACCTTGTCGTGG
TTCTTTCCTTTTGTCAACGTTCAACTGCAACCTTCAGCAGTATGTAGCAG
GTTGTTTGTTCTTACCTCCTGGTACCGCAGTTTCATGTACACAGCGCGAG
TGTATTTCGTACTCGTGCAGCAGTAGTTTCAGGGTTTATCATCGGTAACG
CTCGTTGCGGCGGACACAGGGTGCAGGCTTGTATGGTCGTGAAGACGTGG
TGCATCGCTGAGGCGGGTCAATGCAGTTGCTGACGTTTTCCCTCCTGGAT
GTTCTTTGTGCCCCTTTCCTCCCCTTGCTCCATCCGTGCATCAGGTACAG
TATGGGGCCCTCTATAGTGCCGGTATGTGTTCAGAGAGCAAAGCGGCACT
ATACCGGGCACCGGCACTATTCAGAGTACAGAAAGCCTTGATATTCCGGT
GTGTGCGAGCCGAAAACACCGGCATTATACCGGCAACCGGCACTATTCAA
CCGGCACTATATCGGGCCACCCACTGTAGTAGAGTTGCTGCATTTTGTTT
ACGACGCATATCGATGGCACAACGGCCGGACACACTTTTTGCAACTGTCC
GCGGTCCAACCATGGCACTACAAAGGGCCGTAGAGAAATTCGACGCTTAG
ATGTGTTCACTTTTTCCTTTTGGCCTCTAATGAAAATGCTGAATGGCAAA
GCACATGGCATGTTCTCGCTATGGATGACAGGTGTTTGTACAACCGAGGG
CTGGACATCAAGACGGGGTCGAAGGCTGATTTGGCGGTTCCTCCGTCGAA
CAGCTACCCAACCTATGGGGTGCCAGGGCAGTGCTTGAAGACGTGGTGTT
AATCCTGCGCGATGTAACGGTGATTCAATGCGAACCTCTTGGTGATCATT
GGCAGCCATTTTGCATCGCTGCGGAGAACTGTGGTGACGACCGGAAGATG
TAAACGCTTGGTTACTGCACAGGCACATTCGGAGAGCTAGGGTTCGTTTT
CCATGCTTATTCGTTGCTATTTCAGCGAGCGCCCCTTGGCGAGCAACTGC
T
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protein sequence of EsuBft1009_11a-0001

>EsuBft1009_11 ID=EsuBft1009_11|Name=EsuBft1009_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=58bp
MQERHNPQHHRNNNREGRVLDRRGACCVVLRTNARAGSTNTHITCFPAYD
ARPDAAMW
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mRNA from alignment at Scaffold_106:106068..108178-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1009_11a-0001 ID=EsuBft1009_11a-0001|Name=EsuBft1009_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2111bp|location=Sequence derived from alignment at Scaffold_106:106068..108178- (Ectocarpus subulatus male Bft15b)
ATGCAGGAGCGCCACAACCCGCAGCACCACCGCAACAACAACCGCGAGGG
TCGAGTAAAGGCACAGGGAAATTCGTCATAAACGGAACTGGGACAATGGG
CAGGGATGAATTTGTTTAATGCGACACCGCTGATTGGGCGAAACCACCCC
ATTTGAACGAATCTGATTGGGAGTTCAATGCGGGTTTTAAATGCGGCACT
TGGAATTAGTACAGGTGTTGGACAGACGGGGTGCGTGCTGCGTTGTGCTG
AGAACCAACGCGCGCGCCGGCAGCACAAACACGCACATCACGTGCTTTCC
GGCGTATGACGCGAGGCCAGACGCCGCGATGTGGTGACATGCCAAGCAAT
GCCCCGCATGAAGCCACCTGGGGCTGGGCTGCAACGGCGGCGGCGTGAAC
CTCTTGTTTGAAGCAAACGACCTTATCATCAACCAGAGCGCCGGTTGTGG
TTGTGGCATCATCATCATCATGACCGACCACGAAGCAACGGACATGGGAT
AAGGGCGTCTTGGCGACGGCTGGCTGTGTAGCACACGTTGCTGAGCACTG
GTGGCGGTAAAGCTAGGAACAGAAGCAGAGGTAGCAGCTGTCACCCCGTT
TCGGCTTTTCCAGGTGAATATGTTGGTGCTACAAAGCAGGTGTAAGGCAA
CAGCAGTGAGTTGCGGCGCTTAGCCTTCGTCGGGTGTATCGTGTGCGTGC
CTCTCTGTACGCTGCTTAGCACGCCATTGATGTGACGGCTGCTGCTGTAC
TGCTGTAGTGTGCGTACATAACGGGTACCGAACGTTTCATTATTGACAGA
TCAACAGGTGCTGTCCTGCAAAAAAAAAGTCGTCACGGAGTAAATCGGTC
TTTTCTCGCAAGCATTTCACGATAGCAGCAACTTGACAGCAGTGTACCAG
ATAGCTCGCAGAGGTGGACCCCCGAAGACGAAATCCGTCCGGAAGCTGTA
TCGCTACATTCATCAAGCTATGACAAGGGGTCAAACGCCGTTTCTTCCCA
CGTCCAACCTCAAATCCTTTCTTTTGTAGCAATTGTATCCACGCAGTCCC
TTCCGAGGAACTGGAGATCTGTGAAGGTCTGCTTGCTGTACATTGGCAAC
CTTGTCGTGGTTCTTTCCTTTTGTCAACGTTCAACTGCAACCTTCAGCAG
TATGTAGCAGGTTGTTTGTTCTTACCTCCTGGTACCGCAGTTTCATGTAC
ACAGCGCGAGTGTATTTCGTACTCGTGCAGCAGTAGTTTCAGGGTTTATC
ATCGGTAACGCTCGTTGCGGCGGACACAGGGTGCAGGCTTGTATGGTCGT
GAAGACGTGGTGCATCGCTGAGGCGGGTCAATGCAGTTGCTGACGTTTTC
CCTCCTGGATGTTCTTTGTGCCCCTTTCCTCCCCTTGCTCCATCCGTGCA
TCAGGTACAGTATGGGGCCCTCTATAGTGCCGGTATGTGTTCAGAGAGCA
AAGCGGCACTATACCGGGCACCGGCACTATTCAGAGTACAGAAAGCCTTG
ATATTCCGGTGTGTGCGAGCCGAAAACACCGGCATTATACCGGCAACCGG
CACTATTCAACCGGCACTATATCGGGCCACCCACTGTAGTAGAGTTGCTG
CATTTTGTTTACGACGCATATCGATGGCACAACGGCCGGACACACTTTTT
GCAACTGTCCGCGGTCCAACCATGGCACTACAAAGGGCCGTAGAGAAATT
CGACGCTTAGATGTGTTCACTTTTTCCTTTTGGCCTCTAATGAAAATGCT
GAATGGCAAAGCACATGGCATGTTCTCGCTATGGATGACAGGTGTTTGTA
CAACCGAGGGCTGGACATCAAGACGGGGTCGAAGGCTGATTTGGCGGTTC
CTCCGTCGAACAGCTACCCAACCTATGGGGTGCCAGGGCAGTGCTTGAAG
ACGTGGTGTTAATCCTGCGCGATGTAACGGTGATTCAATGCGAACCTCTT
GGTGATCATTGGCAGCCATTTTGCATCGCTGCGGAGAACTGTGGTGACGA
CCGGAAGATGTAAACGCTTGGTTACTGCACAGGCACATTCGGAGAGCTAG
GGTTCGTTTTCCATGCTTATTCGTTGCTATTTCAGCGAGCGCCCCTTGGC
GAGCAACTGCT
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Coding sequence (CDS) from alignment at Scaffold_106:106068..108178-

>EsuBft1009_11a-0001 ID=EsuBft1009_11a-0001|Name=EsuBft1009_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=177bp|location=Sequence derived from alignment at Scaffold_106:106068..108178- (Ectocarpus subulatus male Bft15b)
ATGCAGGAGCGCCACAACCCGCAGCACCACCGCAACAACAACCGCGAGGG
TCGAGTGTTGGACAGACGGGGTGCGTGCTGCGTTGTGCTGAGAACCAACG
CGCGCGCCGGCAGCACAAACACGCACATCACGTGCTTTCCGGCGTATGAC
GCGAGGCCAGACGCCGCGATGTGGTGA
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