EsuBft3934_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft3934_3a-0001
Unique Name	EsuBft3934_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_106	contig	Scaffold_106:72214..74276 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7739.XP_002599408.1
ProteomeId	EsuBft3934_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	128
Hectar predicted targeting category	other localisation
Evalue	4.93e-08
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,3A35Z@33154\|Opisthokonta,3BQYF@33208\|Metazoa,3D7GC@33213\|Bilateria,48EZY@7711\|Chordata
Date last modified	2016-06-13
Date creation	2016-06-13
Description	Ribonuclease H protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft3934_3a	EsuBft3934_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_106 72214..74276 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3934_3a-0001-exon	agat-exon-17899	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 72214..73170 +
EsuBft3934_3a-0001-exon	EsuBft3934_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 73953..74276 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3934_3a-0001-cds	EsuBft3934_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_106 72214..72846 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3934_3a-0001-exon	agat-three_prime_utr-14787	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_106 72847..73170 +
EsuBft3934_3a-0001-exon	agat-three_prime_utr-14788	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_106 73953..74276 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3934_3a-0001	EsuBft3934_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_106 72214..72846 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_106:72214..74276+
coding sequence from alignment at Scaffold_106:72214..74276+

spliced messenger RNA

>EsuBft3934_3a-0001 ID=EsuBft3934_3a-0001|Name=EsuBft3934_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1281bp|location=Sequence derived from alignment at Scaffold_106:72214..74276+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATGGTCCCCACGCCGCGACCACTACCGGCTGCTGCAGACGACACA
CCACCGTCTGCCTCTGCGAGTTATCGGCTACCGGCGCAAACGAGGCACCT
ACCGGCAGCTGTCATACGCCCAGGCGCTGAAGAGGGTCGGCTGCCAGAGC
GTGGAGGCCACTGTCCGTCAACGGTGCCTGCTCTTTGCGGGGGCCATGGC
AAGACAGCCAGACGGGCGGCTTCCGAAACGGCTGATGTTCGGCGAGTTGG
TGGGAGGGGAGAACCCGGGCCGGGGAAGCCCGGAGCAGAACTGGCTGATA
TGCCTGAAGGACGACCTGAAGATGTTCGAAGCCAGACACGGCTCCACGCC
CGACAAGCGGAGCTTCTTCGGAATCCCGAAGCCAGACTGGGACGAGGCGG
CGAAGGTGGAGGGGGGGGTACCGTGGCACGCGGGGGTGCTACAGGGAGCT
GAGAGGTTTATGGCCTCTTGGCACAAGGGCGAGGAGAAGGCCAGCCGACA
ACGAGCCATCAAACGAGGAGACAGCGGGCCCAAAAAGAGTCTAGATACGG
CACCCATCTACGGGGCGGGAGGGGGGCGGGAGGAAACGGCGCGGGAAGAA
AGCAAGCGAGAAGAGACCGACCGCGTGACGTGACATGTTGCGGTTGAATT
TCAGCGACTAGTTTTTCTGTTGCCCTCTCCCCCGTTTGCTGTCGCGAACT
CTACGGATATCCCTGTCTCTGTGCGAGTTTGTTTATGTCCTCGTCTGTCT
TTTGATTTATTTCGTCTTTGTTTTGTTTTTTTCAGTGCTGCACGACTGAA
AAAAATAAAAAGTATGTGAGAAACAACGCTTCCAACGGGAAAGCAGCCCC
CTGTGGAAACCCCTCCGATCAGGCGGCTCGCGGCGCAACAGACCTCCACA
CCCAGCACGGGCTCTAGAGGGCGAACCAGAGGCTAAACTGCCCAGACAAC
TCGAGAGGTATTTAATGCATGGGATAACGGCCGGCACAGGTCGTGCTGAC
AGATGACCCGTCGGAGAGGTAGGGGGGGCAACCGGGCTGGTGGGGCTAAC
AACCCCAGAGGTCAACCGGCTACGCCACCTGCTACACCTCCAAACCAGCC
TAGGAGCTCTGTTACACCCAGAAGCGGGGGTATGCAGCCAGCATGGGACC
TTCGTCAGCTTACGGAAGGCCCGCTAACCCCGCGTACTCCAGTGGTCGAC
AACTCAGGGGGAGACATAACAAGTGAACGTCCACGGATCAGGAGCGGGAG
AGAGGGCAACTTAACCACTGAGGTGCGCACC

protein sequence of EsuBft3934_3a-0001

>EsuBft3934_3 ID=EsuBft3934_3|Name=EsuBft3934_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=210bp
MTWSPRRDHYRLLQTTHHRLPLRVIGYRRKRGTYRQLSYAQALKRVGCQS
VEATVRQRCLLFAGAMARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLI
CLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGA
ERFMASWHKGEEKASRQRAIKRGDSGPKKSLDTAPIYGAGGGREETAREE
SKREETDRVT

mRNA from alignment at Scaffold_106:72214..74276+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft3934_3a-0001 ID=EsuBft3934_3a-0001|Name=EsuBft3934_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2063bp|location=Sequence derived from alignment at Scaffold_106:72214..74276+ (Ectocarpus subulatus male Bft15b)
ATGACATGGTCCCCACGCCGCGACCACTACCGGCTGCTGCAGACGACACA
CCACCGTCTGCCTCTGCGAGTTATCGGCTACCGGCGCAAACGAGGCACCT
ACCGGCAGCTGTCATACGCCCAGGCGCTGAAGAGGGTCGGCTGCCAGAGC
GTGGAGGCCACTGTCCGTCAACGGTGCCTGCTCTTTGCGGGGGCCATGGC
AAGACAGCCAGACGGGCGGCTTCCGAAACGGCTGATGTTCGGCGAGTTGG
TGGGAGGGGAGAACCCGGGCCGGGGAAGCCCGGAGCAGAACTGGCTGATA
TGCCTGAAGGACGACCTGAAGATGTTCGAAGCCAGACACGGCTCCACGCC
CGACAAGCGGAGCTTCTTCGGAATCCCGAAGCCAGACTGGGACGAGGCGG
CGAAGGTGGAGGGGGGGGTACCGTGGCACGCGGGGGTGCTACAGGGAGCT
GAGAGGTTTATGGCCTCTTGGCACAAGGGCGAGGAGAAGGCCAGCCGACA
ACGAGCCATCAAACGAGGAGACAGCGGGCCCAAAAAGAGTCTAGATACGG
CACCCATCTACGGGGCGGGAGGGGGGCGGGAGGAAACGGCGCGGGAAGAA
AGCAAGCGAGAAGAGACCGACCGCGTGACGTGACATGTTGCGGTTGAATT
TCAGCGACTAGTTTTTCTGTTGCCCTCTCCCCCGTTTGCTGTCGCGAACT
CTACGGATATCCCTGTCTCTGTGCGAGTTTGTTTATGTCCTCGTCTGTCT
TTTGATTTATTTCGTCTTTGTTTTGTTTTTTTCAGTGCTGCACGACTGAA
AAAAATAAAAAGTATGTGAGAAACAACGCTTCCAACGGGAAAGCAGCCCC
CTGTGGAAACCCCTCCGATCAGGCGGCTCGCGGCGCAACAGACCTCCACA
CCCAGCACGGGCTCTAGAGGGCGAACCAGAGGCTAAACTGCCCAGACAAC
TCGAGAGGTATGTTAACACGATGCAAGGGCACATCAGGGTATGTTTTATA
CGCCCAGGTACACATGGTAGGGTGAGAAATTCAGACTCTTAGCTAGAGCA
TACCACACAGCGGCAGCACCAAAATCCACGAGGAAGCATCACACGCGAGC
CGACCTCTGCGCAAGCTTGGCGTGTTGCAGCCCAATTATGCTGCCGACGT
ATACCTAGGTCTCATTGCCACCTAATGCAAAAGGTTTGAGGCGATTTAGT
GCGTTAGAAAATGAGCATGGTGTGTTCAAAATTCAAATTTCAGGAGAGTC
TACGTCGGGGGGTTCGAACGCACGCTCTCGCATGTTGCGCATGTTTAGTC
CACTGGATACACGACCCCCATCCAAAGAAAAAATGGAAATGCTCGATACA
GTCCGGCCGCCACAAAAATTTATAGGAAATATGGACGTCGAAAGAGCAAG
TACGTCTGTCTTGAAGTTAAAATTTAGCTCGGTGCTTGCCATGGTGCGAG
TGAAACATGACCCGGGGCGCTCAGCTACGCGTACTCCAGACCGTTCATCA
GCAGTAGATTGGAACGGCGCAGATATGTCGAGTCGGGCATATAGTCTATA
GTGCGTAGATCGACAGCTTTCAGTCCGTCACGCTCTGAGGTACATAAGCA
TACCCAAACAGAGGATCATATGTTATGCATGGCTGTCAAGAGACAACGAT
AGAACCACACACATAGCATAGGTGTGCGCCTGCGTAGGCTGTACGTGTCA
CGTGACCTTTTGTAATTTTTGGTTGTATACCATGGCCAGGTATTTAATGC
ATGGGATAACGGCCGGCACAGGTCGTGCTGACAGATGACCCGTCGGAGAG
GTAGGGGGGGCAACCGGGCTGGTGGGGCTAACAACCCCAGAGGTCAACCG
GCTACGCCACCTGCTACACCTCCAAACCAGCCTAGGAGCTCTGTTACACC
CAGAAGCGGGGGTATGCAGCCAGCATGGGACCTTCGTCAGCTTACGGAAG
GCCCGCTAACCCCGCGTACTCCAGTGGTCGACAACTCAGGGGGAGACATA
ACAAGTGAACGTCCACGGATCAGGAGCGGGAGAGAGGGCAACTTAACCAC
TGAGGTGCGCACC

Coding sequence (CDS) from alignment at Scaffold_106:72214..74276+

>EsuBft3934_3a-0001 ID=EsuBft3934_3a-0001|Name=EsuBft3934_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=633bp|location=Sequence derived from alignment at Scaffold_106:72214..74276+ (Ectocarpus subulatus male Bft15b)
ATGACATGGTCCCCACGCCGCGACCACTACCGGCTGCTGCAGACGACACA
CCACCGTCTGCCTCTGCGAGTTATCGGCTACCGGCGCAAACGAGGCACCT
ACCGGCAGCTGTCATACGCCCAGGCGCTGAAGAGGGTCGGCTGCCAGAGC
GTGGAGGCCACTGTCCGTCAACGGTGCCTGCTCTTTGCGGGGGCCATGGC
AAGACAGCCAGACGGGCGGCTTCCGAAACGGCTGATGTTCGGCGAGTTGG
TGGGAGGGGAGAACCCGGGCCGGGGAAGCCCGGAGCAGAACTGGCTGATA
TGCCTGAAGGACGACCTGAAGATGTTCGAAGCCAGACACGGCTCCACGCC
CGACAAGCGGAGCTTCTTCGGAATCCCGAAGCCAGACTGGGACGAGGCGG
CGAAGGTGGAGGGGGGGGTACCGTGGCACGCGGGGGTGCTACAGGGAGCT
GAGAGGTTTATGGCCTCTTGGCACAAGGGCGAGGAGAAGGCCAGCCGACA
ACGAGCCATCAAACGAGGAGACAGCGGGCCCAAAAAGAGTCTAGATACGG
CACCCATCTACGGGGCGGGAGGGGGGCGGGAGGAAACGGCGCGGGAAGAA
AGCAAGCGAGAAGAGACCGACCGCGTGACGTGA