Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LRF1 |
| ProteomeId | EsuBft1022_2 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Max annot lvl | 2759|Eukaryota |
| Length | 79 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.84e-12 |
| EggNOG OGs | 2DCSR@1|root,2S5KN@2759|Eukaryota |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1022_2a-0001 ID=EsuBft1022_2a-0001|Name=EsuBft1022_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=797bp|location=Sequence derived from alignment at Scaffold_103:244778..245574+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GTGGTGCGTACGCGTGGGGACGGCAGCACGGAAGAGATCACGAACATCAA
TTTCGCCGCGCCTCCACCGCCTCAACCGACAGTGCCTTGTACGAAGTGCA
ACCGTCGTTTCTTCAACACCCAGGGCCTTGGGGTGCACATCAACACTAAC
CACGAGCGTGAAGCGAAGATCTCAGTTCGACGGTGGTGTTCAACGAACAG
GAAGGGGGCGGGGGCATCATCTCTCCTCCCTTGGGGTGGGACACCGTCAG
GACGTTGCTGGCACGTTGCGTTTCACCATGGAGAGAGTCGCGGATACGGC
GCGACATGTCCGCCAGGGTCCGTGACGTTTGTGCTGCAGCCCTACGCCCT
GGAGTCGAGCGGAACAACAACCTCGTGAACGACGGCTTTTCACAATCGGA
GTCGCCACCAAAGAAAACGTGTGGAGCAGCCTCGAGGAGACGGTACACCT
CGCGCGAGAAGGTCGGTGTTATTCAGGAGCTGCGAGATCTAGAGTCGCGG
TCAGCGGAGGTTCGTGCGCGCTTCGGTATGACCCCTCTCTTTTACTTGGA
ACATAAGTCAGGGATCTCGGCCAGCAATATCAGCAAATGGCAGAAGGATG
AAGACTCTCTTGTGCAGCAGGCAGCTGACAAGGTGCGGAGTTGTTTGATG
GCGACATGCACTCGACGGCGGCTGTGATTCCCTGACGCGGAGAAGGAGCT
GTACAAGATGTTGCTGGCACGACGCAAGAGGAAGCTGCGGGTCTCGACAA
GGTGGATCACGGTCACTTTCAAAAAGCTCATCATGGAAAGGTACCCG back to topprotein sequence of EsuBft1022_2a-0001 >EsuBft1022_2 ID=EsuBft1022_2|Name=EsuBft1022_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=123bp
MSARVRDVCAAALRPGVERNNNLVNDGFSQSESPPKKTCGAASRRRYTSR
EKVGVIQELRDLESRSAEVRARFGMTPLFYLEHKSGISASNISKWQKDED
SLVQQAADKVRSCLMATCTRRRL back to topmRNA from alignment at Scaffold_103:244778..245574+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1022_2a-0001 ID=EsuBft1022_2a-0001|Name=EsuBft1022_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=797bp|location=Sequence derived from alignment at Scaffold_103:244778..245574+ (Ectocarpus subulatus male Bft15b)
GTGGTGCGTACGCGTGGGGACGGCAGCACGGAAGAGATCACGAACATCAA
TTTCGCCGCGCCTCCACCGCCTCAACCGACAGTGCCTTGTACGAAGTGCA
ACCGTCGTTTCTTCAACACCCAGGGCCTTGGGGTGCACATCAACACTAAC
CACGAGCGTGAAGCGAAGATCTCAGTTCGACGGTGGTGTTCAACGAACAG
GAAGGGGGCGGGGGCATCATCTCTCCTCCCTTGGGGTGGGACACCGTCAG
GACGTTGCTGGCACGTTGCGTTTCACCATGGAGAGAGTCGCGGATACGGC
GCGACATGTCCGCCAGGGTCCGTGACGTTTGTGCTGCAGCCCTACGCCCT
GGAGTCGAGCGGAACAACAACCTCGTGAACGACGGCTTTTCACAATCGGA
GTCGCCACCAAAGAAAACGTGTGGAGCAGCCTCGAGGAGACGGTACACCT
CGCGCGAGAAGGTCGGTGTTATTCAGGAGCTGCGAGATCTAGAGTCGCGG
TCAGCGGAGGTTCGTGCGCGCTTCGGTATGACCCCTCTCTTTTACTTGGA
ACATAAGTCAGGGATCTCGGCCAGCAATATCAGCAAATGGCAGAAGGATG
AAGACTCTCTTGTGCAGCAGGCAGCTGACAAGGTGCGGAGTTGTTTGATG
GCGACATGCACTCGACGGCGGCTGTGATTCCCTGACGCGGAGAAGGAGCT
GTACAAGATGTTGCTGGCACGACGCAAGAGGAAGCTGCGGGTCTCGACAA
GGTGGATCACGGTCACTTTCAAAAAGCTCATCATGGAAAGGTACCCG back to topCoding sequence (CDS) from alignment at Scaffold_103:244778..245574+ >EsuBft1022_2a-0001 ID=EsuBft1022_2a-0001|Name=EsuBft1022_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=372bp|location=Sequence derived from alignment at Scaffold_103:244778..245574+ (Ectocarpus subulatus male Bft15b)
ATGTCCGCCAGGGTCCGTGACGTTTGTGCTGCAGCCCTACGCCCTGGAGT
CGAGCGGAACAACAACCTCGTGAACGACGGCTTTTCACAATCGGAGTCGC
CACCAAAGAAAACGTGTGGAGCAGCCTCGAGGAGACGGTACACCTCGCGC
GAGAAGGTCGGTGTTATTCAGGAGCTGCGAGATCTAGAGTCGCGGTCAGC
GGAGGTTCGTGCGCGCTTCGGTATGACCCCTCTCTTTTACTTGGAACATA
AGTCAGGGATCTCGGCCAGCAATATCAGCAAATGGCAGAAGGATGAAGAC
TCTCTTGTGCAGCAGGCAGCTGACAAGGTGCGGAGTTGTTTGATGGCGAC
ATGCACTCGACGGCGGCTGTGA back to top
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