EsuBft663_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft663_5a-0001
Unique NameEsuBft663_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_189contigScaffold_189:129186..130105 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft663_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length86
Hectar predicted targeting categorymitochondrion
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft663_5aEsuBft663_5aEctocarpus subulatus male Bft15bgeneScaffold_189 129186..130105 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft663_5a-0001-exonEsuBft663_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_189 129186..129945 -
EsuBft663_5a-0001-exonagat-exon-81043Ectocarpus subulatus male Bft15bexonScaffold_189 130005..130105 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft663_5a-0001-exonagat-three_prime_utr-19922Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_189 129186..129761 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft663_5a-0001-cdsEsuBft663_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_189 129762..129945 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft663_5a-0001EsuBft663_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_189 129762..130105 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft663_5a-0001 ID=EsuBft663_5a-0001|Name=EsuBft663_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=861bp|location=Sequence derived from alignment at Scaffold_189:129186..130105- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTACCTCGGCGCCGGCTGGTCCCCGTTTGGCGAGGAGGGTAACGGC
GACGAAGAGGCCAGGAAAAGGCCGAGAGAAGCCGACGACGACAACTGGCG
GGCGGTTTGCCGGTACTGGAGAGGCACCCCCGAAGGCCGCAATTGAGTTG
AACGAACCCCTTTGGTGCTGCGTAGGGGAGTCATCATTGTTCAACGGTGG
CAGCGGAGATATGGGTTGGGTTGTGAACATTACGTCCGCTGCCCCTCTCT
CTCCCCTTGACCGAACTGGCACGGCGAGACGATAACGAATGTCTCGGCAT
CCAAGAATTTACATACAATCGTCTGCCTAGCTTATGGGTCGGCACATGCC
TTCCCCACCAATAGTCTACTGCTTTGCTTACAACGTACCACCTCTACTGC
GGTAAGTGCCCGACCGGGAGAACCGAGAACCGGAGCAGATCAACATGCTT
TTCGCGGTGAATTCGATGACGTTTCACCAGCAAATCGTGCCCTGCAACCG
AAAACGCCGCATAAACCCCCCACAAACCAATGGTATATGACTATAACAAC
CAATAGCCACAAACCAAAGAAGGTGTTGTTAATTTTGTTAATCTGTGTCT
TGACTATTTTCTATGATCGAGATGGCACATCAGCCGCACATGCTCCGCAC
ATATGCATACCAAACTGAGAATATGTTTGTAAACTGATGGAGATTGCATG
TGTTAGAACTAATAGGGTGCGACACACAAAAGCCCGACTACCAACAGTAC
ACAACACCTTTCGCCTGCACCTTCCCAACATAACATAATTGAGACACACA
AGACAGCTACCAAACTGATTTGTTGAGCCTGTTACCCACAGGGGAGATGT
CCTAATATGCT
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protein sequence of EsuBft663_5a-0001

>EsuBft663_5 ID=EsuBft663_5|Name=EsuBft663_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=94bp
MVTSAPAGPRLARRVTATKRPGKGREKPTTTTGGRFAGTGEAPPKAAIEL
NEPLWCCVGESSLFNGGSGDMGWVVNITSAAPLSPLDRTGTARR
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mRNA from alignment at Scaffold_189:129186..130105-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft663_5a-0001 ID=EsuBft663_5a-0001|Name=EsuBft663_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=920bp|location=Sequence derived from alignment at Scaffold_189:129186..130105- (Ectocarpus subulatus male Bft15b)
ATGGTTACCTCGGCGCCGGCTGGTCCCCGTTTGGCGAGGAGGGTAACGGC
GACGAAGAGGCCAGGAAAAGGCCGAGAGAAGCCGACGACGACAACTGGCG
GGTATGAGACGTGCTTGTCTTCGGCCTGGGCACAAGGTTTACCGCTTTCG
CCTCGAACAGGCGGTTTGCCGGTACTGGAGAGGCACCCCCGAAGGCCGCA
ATTGAGTTGAACGAACCCCTTTGGTGCTGCGTAGGGGAGTCATCATTGTT
CAACGGTGGCAGCGGAGATATGGGTTGGGTTGTGAACATTACGTCCGCTG
CCCCTCTCTCTCCCCTTGACCGAACTGGCACGGCGAGACGATAACGAATG
TCTCGGCATCCAAGAATTTACATACAATCGTCTGCCTAGCTTATGGGTCG
GCACATGCCTTCCCCACCAATAGTCTACTGCTTTGCTTACAACGTACCAC
CTCTACTGCGGTAAGTGCCCGACCGGGAGAACCGAGAACCGGAGCAGATC
AACATGCTTTTCGCGGTGAATTCGATGACGTTTCACCAGCAAATCGTGCC
CTGCAACCGAAAACGCCGCATAAACCCCCCACAAACCAATGGTATATGAC
TATAACAACCAATAGCCACAAACCAAAGAAGGTGTTGTTAATTTTGTTAA
TCTGTGTCTTGACTATTTTCTATGATCGAGATGGCACATCAGCCGCACAT
GCTCCGCACATATGCATACCAAACTGAGAATATGTTTGTAAACTGATGGA
GATTGCATGTGTTAGAACTAATAGGGTGCGACACACAAAAGCCCGACTAC
CAACAGTACACAACACCTTTCGCCTGCACCTTCCCAACATAACATAATTG
AGACACACAAGACAGCTACCAAACTGATTTGTTGAGCCTGTTACCCACAG
GGGAGATGTCCTAATATGCT
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Coding sequence (CDS) from alignment at Scaffold_189:129186..130105-

>EsuBft663_5a-0001 ID=EsuBft663_5a-0001|Name=EsuBft663_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=285bp|location=Sequence derived from alignment at Scaffold_189:129186..130105- (Ectocarpus subulatus male Bft15b)
ATGGTTACCTCGGCGCCGGCTGGTCCCCGTTTGGCGAGGAGGGTAACGGC
GACGAAGAGGCCAGGAAAAGGCCGAGAGAAGCCGACGACGACAACTGGCG
GGCGGTTTGCCGGTACTGGAGAGGCACCCCCGAAGGCCGCAATTGAGTTG
AACGAACCCCTTTGGTGCTGCGTAGGGGAGTCATCATTGTTCAACGGTGG
CAGCGGAGATATGGGTTGGGTTGTGAACATTACGTCCGCTGCCCCTCTCT
CTCCCCTTGACCGAACTGGCACGGCGAGACGATAA
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