EsuBft105_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft105_5a-0001
Unique NameEsuBft105_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_100contigScaffold_100:622663..626927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft105_5
Protein domainsSignalP-TM
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length421
Hectar predicted targeting categorymitochondrion
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft105_5aEsuBft105_5aEctocarpus subulatus male Bft15bgeneScaffold_100 622663..626927 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_5a-0001EsuBft105_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_100 623270..623611 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_5a-0001-exonagat-exon-19267Ectocarpus subulatus male Bft15bexonScaffold_100 622663..626847 +
EsuBft105_5a-0001-exonEsuBft105_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_100 626901..626927 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_5a-0001-exonagat-five_prime_utr-369Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_100 622663..623269 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_5a-0001-cdsEsuBft105_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_100 623270..623611 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft105_5a-0001-exonagat-three_prime_utr-595Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_100 623612..626847 +
EsuBft105_5a-0001-exonagat-three_prime_utr-596Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_100 626901..626927 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft105_5a-0001 ID=EsuBft105_5a-0001|Name=EsuBft105_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4212bp|location=Sequence derived from alignment at Scaffold_100:622663..626927+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CATTAAAAACCATCCCGGTCTCTCTATCCAGTACCTCCTTCTGTCTCAAT
CTCTCCGTACTAATCCATCACTTGACTCGGCCAATTTCCGTGGTCACAGG
CTAACGTACCTAGAAAAGGTATACCAAAATAAAATGGACCCCAAGGGTCA
GCAGAGCGATAAAATACAAGAAAACAAAATATAATCAGAAACAAATAAAA
TAAAATAAAATAAATAATTAGACTAGTGGAACGGCCGCACCACCAGCCTG
GGGGGGTAGCCTCCCACTACATGGAGGCAGGTCGACGGCCAAAGGAAGGG
GCGGGGGTACGTGCCAGTAAAAAACAAAACAAAAGACAAAATAAAACAGA
ATAAAGCAAAGACGAGGACACAAACAAACTCGCACAGAGACAGGGATATC
CCTAGAGACAGTCTGAACGCGACAGCAAACGAGGGAGAGGGCAACAGAAA
AATTAGTCGTTGAAATTCGACCGCAACATGTCACGTCACGCGGTCGGTCT
CTTCTCGCTTGCTTTCTTCCCGCCGCGCCGTTTCCTTCCGCCCCCCTACC
GCCCCGTTGATTGGTGCCGTATCTAGACTATTTTTGGGCCCGCTGTCTCC
TCGTTTGATGGCTCGTTGTCGGCTGGCCTCCTCCTTGCCCTTGTGCCAAG
AGGCCATGAACCTCTCAGCTCCCTGTAGCACCCCCGCGTGCCACGGTACC
CCCCCCTCCACCTTCGCCGCCTCACTCCAGACTAACTTCGGGACTCCGAA
GACGCTCGGCTTGTCGGTCGTGGAGCCGTACCTGGCTTCGAACATCTTCA
TGTCGTCCTTCAGGCATGTCAGCCAGTTCTGCTCCGGGTTTCCCTGGCCC
GGGTCCTCCCCTCCCACCAACTCGCCGAACATCAGCCGTTTCGGAAGCCG
CCCGTCCGGCTGTCTTGCCACGGCCCCCGCAAAGAGCAGGCGCCGTTGAC
GGACAGTGGCCTCCACGCTCTGGCAGCCGACCCTCTTTAGCGCCTGGGCG
TATGACAGCTGCCGGTAGGTGCCTCGTTTGCGCCGGTAGCCGATAACTCG
CAGAAGTAGACGGTGGTGTGTCGTCTGCAGCAGCCGGTAGTGGTCGCGGC
GTGGGGACCATGTCATGCAGCCGTATAGCAGTGCCTCCACTGCCTCCGCC
TGGAGCAGGCGGGCTTTGAGGCGAAACGGTGCTCCCGGTCGGTCGAAGAG
CTCCGTGGCGTATCGCTTAATGCACGCCCACGCTGCTTTGCTCCTGTGGT
TGATCTCTCGGGTAAGGTCGCCCTGCTCGTTGACGAGGCCGCCCAGGTAT
CGGAACTCGGTCGTCTGTGCGTACCTTTGCCCCGCTGCTTCGATGGTCAG
CACCGGCGGTGGCGGCGGCGGCGGTCGCTGTCTCTCCTTCACCCGCATCA
CCAGGGTCTCCGTCTTCCTCTCCGACACCGTCAGCCCGAACTCCCGGAAC
ACCTCCACGATAATGGTCATCATCCTCGCCAGGCCGTCGGCGGACTTCGA
CACAACGCCGGCATCGTCGGCATATAGCATCCCCCACACCGCCCTCCGGA
CTCGGTCCAGCAATCCCCCCCCCCTCCGTTCCTCCTCCTTCAAGTACACT
AGGTCCCGCACGATAACCTCATCTTGGCTGAACCGTGTGACAATGATCTC
GAGAGGCGCTGCGAAGAAGACGTTGAACAGCAGTGGGGACATTGAGCACC
CTTGTCGTAATCCCTGCGTGACCGGGAACCAGTCCGATAGCTCCCCATCG
TCCGTGCGGACCCGGGCCCGCATTCCGACGTGGAACTTGCGGATGACGGC
GATCATCTCCCCGGGGATCCCGGCCCGGGCCAGCACCTTCCACAGTAGCT
CCCGGTCCACCGAGTCATATGCCTTCTGCAGATCGATGAAGCACATGTAG
AGCGGGATTCTCCTCCTCCGCCCCAGCTCCTGGAGTCGGCGCACAACGAA
CAGCATGCATACCGTGGATCGGCCAGGCCGGAACCCGCACTGTTCCTCCG
GGAGGATTTCGTTGGCTTCGCAGAATGCGCTCAGGCGGTTGGTGATGGTC
TTGGCGAGTACTTTGCCTACATGCGAGAGCAGCGAGATGCCCCTGTAGTT
GTTGCAGTTCGAACGGTCACCCTTCTTGTACAGCACCTTAATGATGGCAT
CCTTCCACTCCTGCGGCATCTCTCCCCCATTCCACACTTCGACGAAGATG
GCACGGAGGCGCTCCAGTACAACTGGCTCGTCGTCGCCGTCGACCTTGAG
CAGTTCGGCGGCAAGGAGGTCGGGACCAACCGCCTTCCAGTTCCCCAGGC
CTTTCGTCGCCGCCTCAACCTCCTCGAGGTCTGGTACCGCCGCCAGGTGT
CGGGTGGCGCGCGTCGCTGGTCGCTGCATCACCTGTTCGACAACGTCTGG
GTTCAGAGTGGGGGACTTGGAGTTCAGGAGGGTATTGAAGAATCTCCGCC
ACCGCTTGAGGATGGCATCCTTGTTCCGGAGTAGCACGCCGTTCTCGTCT
GTAACGAACTGCTGCCCCCCAGCTTGTCTCCCGCTGAGGCCCGTTGACCG
CTTGAGGTGTTGGTACAGCCCCCGCATGTCGCGGTCCTGGTAGATCGCTT
CGAGCTCCGTCACGTATCTTTCCAGGTGGTCGTAGATGCTCGTTGCGATT
GTTGCCTTCACCCCCTTGCACGTTGCTTTGAGGATCCTCCACGTTGCTGC
GTTCGGTCCGGCCTTGAAGGAATGTCGCGCAGCCCGTCGCTTGTCAAGGG
CGGTCGCCAGGGCTGTCCGTGCCGCGGTGGTCATGTTCCATTCCGTGGTG
CGCCGCCTCCGGGGTTCCTCAGACAGCTCCGTCTCCGCCGCGCCGAGCAG
GGCCTCCGTGAACTCCTTCGCCATTTCCTGCGTGGTGGTCGCCGGCGCGC
CCGACCTCGCGAGCAGGTTGCAGAGAAACCGTTGGGATACAGCCCATCGC
GCTGCCTCGACCTGCAGATCTTGTCGGTTGAACTGCCGCCGTTTGGGGTT
GGTCCGGATAGGTCGGTTGTGGGCCAGCCGGCCACCGAGGTCGACGGTGG
CTACTACGATGTTGTGGTCTGAGTCCGCTCTGACTGGGCGCACTGGCTGA
GGTACGACCTCCATGTTGGACACTCGGTCGCGGTGTGCTTGGCGCGTCAG
GATGTAATCGAGGCACCTACGTTCGCGTCCCGACGGGCCGTTGAACGTAT
GCCATATCCCGCCCCTCCGTGTGTCGAAGAAGGTGTTGAGGACCGCTAAT
CTGTTGTCCGTGGCGAAAGTCAGCAGCAGCTCACCATTTTCGTTCAGCTC
ATTGCGCCCGTACTCGCCCATGGTTCCTTCGTTTTCCCCTGCTATCCCTC
CTCCGGTCTGGGCATTGGCATCCATGAGCACGAAAAGATACTCCTTAGCG
GGGATACGACGCACGAGACTGTCAAGTTTTTCCCAGAACATGTGTTTGCT
CTCGGTGGTGGCCACGTCTGTTGGGGCATACGCAGCCACGAAGGTCACCG
CTCCGCGGTGGCCCATCATCTCAAACCTCATAGCCATGAGGCGCTCGTCC
ACGTACTCCGTGGTGTACTGGGAGGATTTGCACAGCGTCTCCTCCACAGC
GATTCCGACGCCATGCGTACCACCCTTGTCCGTGCCACAGGTGAACACCC
GAAAACCGGATGCTGCGAACTCCGTTCGCCCTGGTCTCCTGACCTCCTGC
AGACCGACAAACGAAATGCCCTGTTTCGCTGCCTCGTGTAAGACGCTGTC
GGCTCTCCCATAGCCGTTGGCCCCGTTCACGGCCAGTGTACGCACATTGT
AGGTTGCTACCCTAACAAGTCGACCCTGCCGCCTCTGCCGGGCGGTGCGT
GCTGCATCCCTAATCAGCCTACGCACCTTCCGGCCCCTCCTCCTCTTCTT
CCTTCCTTTTTTTATTTTCTTTATTTTTATTGCTCTGCGGATCCTCGGGT
TAATGTAAGAGTTAACCCGGTGCTTGCCTTTCCCAGCGAGGTGTCTTCCT
GTCCCGGAGCGGCGTGGCTCTCCAGCTCTGGACCCTTTCCGTCCCCCTGT
TGGGTGCTTACCCACACGGTGTGCGATCATCCCGCCACCCTCTCCGTGCT
CTCCACCGCTGCCTTGCCCCGGTGTCCAAACCGGGGCATTTGGGTTCAAA
CCCATCGGCAGCTGTCTCCAAGTTGGCTTATCACCATGGTTGCTTGTCAT
CTCATAACCGGG
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protein sequence of EsuBft105_5a-0001

>EsuBft105_5 ID=EsuBft105_5|Name=EsuBft105_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=113bp
MARCRLASSLPLCQEAMNLSAPCSTPACHGTPPSTFAASLQTNFGTPKTL
GLSVVEPYLASNIFMSSFRHVSQFCSGFPWPGSSPPTNSPNISRFGSRPS
GCLATAPAKSRRR
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mRNA from alignment at Scaffold_100:622663..626927+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft105_5a-0001 ID=EsuBft105_5a-0001|Name=EsuBft105_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4265bp|location=Sequence derived from alignment at Scaffold_100:622663..626927+ (Ectocarpus subulatus male Bft15b)
CATTAAAAACCATCCCGGTCTCTCTATCCAGTACCTCCTTCTGTCTCAAT CTCTCCGTACTAATCCATCACTTGACTCGGCCAATTTCCGTGGTCACAGG CTAACGTACCTAGAAAAGGTATACCAAAATAAAATGGACCCCAAGGGTCA GCAGAGCGATAAAATACAAGAAAACAAAATATAATCAGAAACAAATAAAA TAAAATAAAATAAATAATTAGACTAGTGGAACGGCCGCACCACCAGCCTG GGGGGGTAGCCTCCCACTACATGGAGGCAGGTCGACGGCCAAAGGAAGGG GCGGGGGTACGTGCCAGTAAAAAACAAAACAAAAGACAAAATAAAACAGA ATAAAGCAAAGACGAGGACACAAACAAACTCGCACAGAGACAGGGATATC CCTAGAGACAGTCTGAACGCGACAGCAAACGAGGGAGAGGGCAACAGAAA AATTAGTCGTTGAAATTCGACCGCAACATGTCACGTCACGCGGTCGGTCT CTTCTCGCTTGCTTTCTTCCCGCCGCGCCGTTTCCTTCCGCCCCCCTACC GCCCCGTTGATTGGTGCCGTATCTAGACTATTTTTGGGCCCGCTGTCTCC TCGTTTGATGGCTCGTTGTCGGCTGGCCTCCTCCTTGCCCTTGTGCCAAG AGGCCATGAACCTCTCAGCTCCCTGTAGCACCCCCGCGTGCCACGGTACC CCCCCCTCCACCTTCGCCGCCTCACTCCAGACTAACTTCGGGACTCCGAA GACGCTCGGCTTGTCGGTCGTGGAGCCGTACCTGGCTTCGAACATCTTCA TGTCGTCCTTCAGGCATGTCAGCCAGTTCTGCTCCGGGTTTCCCTGGCCC GGGTCCTCCCCTCCCACCAACTCGCCGAACATCAGCCGTTTCGGAAGCCG CCCGTCCGGCTGTCTTGCCACGGCCCCCGCAAAGAGCAGGCGCCGTTGAC GGACAGTGGCCTCCACGCTCTGGCAGCCGACCCTCTTTAGCGCCTGGGCG TATGACAGCTGCCGGTAGGTGCCTCGTTTGCGCCGGTAGCCGATAACTCG CAGAAGTAGACGGTGGTGTGTCGTCTGCAGCAGCCGGTAGTGGTCGCGGC GTGGGGACCATGTCATGCAGCCGTATAGCAGTGCCTCCACTGCCTCCGCC TGGAGCAGGCGGGCTTTGAGGCGAAACGGTGCTCCCGGTCGGTCGAAGAG CTCCGTGGCGTATCGCTTAATGCACGCCCACGCTGCTTTGCTCCTGTGGT TGATCTCTCGGGTAAGGTCGCCCTGCTCGTTGACGAGGCCGCCCAGGTAT CGGAACTCGGTCGTCTGTGCGTACCTTTGCCCCGCTGCTTCGATGGTCAG CACCGGCGGTGGCGGCGGCGGCGGTCGCTGTCTCTCCTTCACCCGCATCA CCAGGGTCTCCGTCTTCCTCTCCGACACCGTCAGCCCGAACTCCCGGAAC ACCTCCACGATAATGGTCATCATCCTCGCCAGGCCGTCGGCGGACTTCGA CACAACGCCGGCATCGTCGGCATATAGCATCCCCCACACCGCCCTCCGGA CTCGGTCCAGCAATCCCCCCCCCCTCCGTTCCTCCTCCTTCAAGTACACT AGGTCCCGCACGATAACCTCATCTTGGCTGAACCGTGTGACAATGATCTC GAGAGGCGCTGCGAAGAAGACGTTGAACAGCAGTGGGGACATTGAGCACC CTTGTCGTAATCCCTGCGTGACCGGGAACCAGTCCGATAGCTCCCCATCG TCCGTGCGGACCCGGGCCCGCATTCCGACGTGGAACTTGCGGATGACGGC GATCATCTCCCCGGGGATCCCGGCCCGGGCCAGCACCTTCCACAGTAGCT CCCGGTCCACCGAGTCATATGCCTTCTGCAGATCGATGAAGCACATGTAG AGCGGGATTCTCCTCCTCCGCCCCAGCTCCTGGAGTCGGCGCACAACGAA CAGCATGCATACCGTGGATCGGCCAGGCCGGAACCCGCACTGTTCCTCCG GGAGGATTTCGTTGGCTTCGCAGAATGCGCTCAGGCGGTTGGTGATGGTC TTGGCGAGTACTTTGCCTACATGCGAGAGCAGCGAGATGCCCCTGTAGTT GTTGCAGTTCGAACGGTCACCCTTCTTGTACAGCACCTTAATGATGGCAT CCTTCCACTCCTGCGGCATCTCTCCCCCATTCCACACTTCGACGAAGATG GCACGGAGGCGCTCCAGTACAACTGGCTCGTCGTCGCCGTCGACCTTGAG CAGTTCGGCGGCAAGGAGGTCGGGACCAACCGCCTTCCAGTTCCCCAGGC CTTTCGTCGCCGCCTCAACCTCCTCGAGGTCTGGTACCGCCGCCAGGTGT CGGGTGGCGCGCGTCGCTGGTCGCTGCATCACCTGTTCGACAACGTCTGG GTTCAGAGTGGGGGACTTGGAGTTCAGGAGGGTATTGAAGAATCTCCGCC ACCGCTTGAGGATGGCATCCTTGTTCCGGAGTAGCACGCCGTTCTCGTCT GTAACGAACTGCTGCCCCCCAGCTTGTCTCCCGCTGAGGCCCGTTGACCG CTTGAGGTGTTGGTACAGCCCCCGCATGTCGCGGTCCTGGTAGATCGCTT CGAGCTCCGTCACGTATCTTTCCAGGTGGTCGTAGATGCTCGTTGCGATT GTTGCCTTCACCCCCTTGCACGTTGCTTTGAGGATCCTCCACGTTGCTGC GTTCGGTCCGGCCTTGAAGGAATGTCGCGCAGCCCGTCGCTTGTCAAGGG CGGTCGCCAGGGCTGTCCGTGCCGCGGTGGTCATGTTCCATTCCGTGGTG CGCCGCCTCCGGGGTTCCTCAGACAGCTCCGTCTCCGCCGCGCCGAGCAG GGCCTCCGTGAACTCCTTCGCCATTTCCTGCGTGGTGGTCGCCGGCGCGC CCGACCTCGCGAGCAGGTTGCAGAGAAACCGTTGGGATACAGCCCATCGC GCTGCCTCGACCTGCAGATCTTGTCGGTTGAACTGCCGCCGTTTGGGGTT GGTCCGGATAGGTCGGTTGTGGGCCAGCCGGCCACCGAGGTCGACGGTGG CTACTACGATGTTGTGGTCTGAGTCCGCTCTGACTGGGCGCACTGGCTGA GGTACGACCTCCATGTTGGACACTCGGTCGCGGTGTGCTTGGCGCGTCAG GATGTAATCGAGGCACCTACGTTCGCGTCCCGACGGGCCGTTGAACGTAT GCCATATCCCGCCCCTCCGTGTGTCGAAGAAGGTGTTGAGGACCGCTAAT CTGTTGTCCGTGGCGAAAGTCAGCAGCAGCTCACCATTTTCGTTCAGCTC ATTGCGCCCGTACTCGCCCATGGTTCCTTCGTTTTCCCCTGCTATCCCTC CTCCGGTCTGGGCATTGGCATCCATGAGCACGAAAAGATACTCCTTAGCG GGGATACGACGCACGAGACTGTCAAGTTTTTCCCAGAACATGTGTTTGCT CTCGGTGGTGGCCACGTCTGTTGGGGCATACGCAGCCACGAAGGTCACCG CTCCGCGGTGGCCCATCATCTCAAACCTCATAGCCATGAGGCGCTCGTCC ACGTACTCCGTGGTGTACTGGGAGGATTTGCACAGCGTCTCCTCCACAGC GATTCCGACGCCATGCGTACCACCCTTGTCCGTGCCACAGGTGAACACCC GAAAACCGGATGCTGCGAACTCCGTTCGCCCTGGTCTCCTGACCTCCTGC AGACCGACAAACGAAATGCCCTGTTTCGCTGCCTCGTGTAAGACGCTGTC GGCTCTCCCATAGCCGTTGGCCCCGTTCACGGCCAGTGTACGCACATTGT AGGTTGCTACCCTAACAAGTCGACCCTGCCGCCTCTGCCGGGCGGTGCGT GCTGCATCCCTAATCAGCCTACGCACCTTCCGGCCCCTCCTCCTCTTCTT CCTTCCTTTTTTTATTTTCTTTATTTTTATTGCTCTGCGGATCCTCGGGT TAATGTAAGAGTTAACCCGGTGCTTGCCTTTCCCAGCGAGGTGTCTTCCT GTCCCGGAGCGGCGTGGCTCTCCAGCTCTGGACCCTTTCCGTCCCCCTGT TGGGTGCTTACCCACACGGTGTGCGATCATCCCGCCACCCTCTCCGTGCT CTCCACCGCTGCCTTGCCCCGGTGTCCAAACCGGGGCATTTGGGTTCAAA CCCATCGGCAGCTGTCTCCAAGTTGGCTTATCACCGTATGTCCTGTAAAC ACATGTCCGCGTACCGCATACATGCTGCAACCGCCCAGATGGTTGCTTGT CATCTCATAACCGGG
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Coding sequence (CDS) from alignment at Scaffold_100:622663..626927+

>EsuBft105_5a-0001 ID=EsuBft105_5a-0001|Name=EsuBft105_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=342bp|location=Sequence derived from alignment at Scaffold_100:622663..626927+ (Ectocarpus subulatus male Bft15b)
ATGGCTCGTTGTCGGCTGGCCTCCTCCTTGCCCTTGTGCCAAGAGGCCAT
GAACCTCTCAGCTCCCTGTAGCACCCCCGCGTGCCACGGTACCCCCCCCT
CCACCTTCGCCGCCTCACTCCAGACTAACTTCGGGACTCCGAAGACGCTC
GGCTTGTCGGTCGTGGAGCCGTACCTGGCTTCGAACATCTTCATGTCGTC
CTTCAGGCATGTCAGCCAGTTCTGCTCCGGGTTTCCCTGGCCCGGGTCCT
CCCCTCCCACCAACTCGCCGAACATCAGCCGTTTCGGAAGCCGCCCGTCC
GGCTGTCTTGCCACGGCCCCCGCAAAGAGCAGGCGCCGTTGA
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