EsuBft1029_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1029_3a-0001
Unique NameEsuBft1029_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_70contigScaffold_70:303776..308655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1029_3
Protein domainsSignalP-noTM
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsCoil
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon6
Length142
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_005360.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1029_3aEsuBft1029_3aEctocarpus subulatus male Bft15bgeneScaffold_70 303776..308655 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1029_3a-0001EsuBft1029_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_70 304258..308576 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1029_3a-0001-exonEsuBft1029_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_70 303776..304404 -
EsuBft1029_3a-0001-exonagat-exon-26125Ectocarpus subulatus male Bft15bexonScaffold_70 304810..304929 -
EsuBft1029_3a-0001-exonagat-exon-26129Ectocarpus subulatus male Bft15bexonScaffold_70 305617..305728 -
EsuBft1029_3a-0001-exonagat-exon-26126Ectocarpus subulatus male Bft15bexonScaffold_70 306100..306207 -
EsuBft1029_3a-0001-exonagat-exon-26128Ectocarpus subulatus male Bft15bexonScaffold_70 306804..306934 -
EsuBft1029_3a-0001-exonagat-exon-26127Ectocarpus subulatus male Bft15bexonScaffold_70 308328..308655 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1029_3a-0001-exonagat-three_prime_utr-278Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_70 303776..304257 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1029_3a-0001-cdsEsuBft1029_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_70 304258..304404 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1029_3a-0001-exonagat-five_prime_utr-161Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_70 308577..308655 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1029_3a-0001 ID=EsuBft1029_3a-0001|Name=EsuBft1029_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1428bp|location=Sequence derived from alignment at Scaffold_70:303776..308655- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CAGCGTCGCTTTGGCGGCATGGGGTGGGCTTAATTTGTTCGCTCTCACAG
AGGGGGAGGGCGACAGTTGTCTACTAACCATGGGTCTCAATGGAACGAGA
CAATGCGTGGTGGCGATGGCTGCCTTGAGCCTGGGCGGTGTTGGTGTGGA
TAGCTTCCTTGTGCCACAGCAGCGGTTCGGCGGCAGCAGCTGTGCAAGAT
CATGTTTGAGAGTAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCACGAGGCTGGAAGAAGATCGTCGTCCTC
CGTGACTAGGATGGCTGCTACCGCAGAGATCGGTTCCTTCCCGTACGAAG
ATGTGCTGCCGTTTCTCAAGGAGCACGTGCAGCCTTCCGACCAGATGCTG
CTGCTGGGGTGTGGGACAGAACTTCCTTTGCAGCTCTCTCGGGATGGCTA
CGGCACTCGAGATGGCCGATCGTTCATGCGCTGCATCGACTCCGACCCCG
ACTTGATAGCGGCCATGAAGAATGCGGCCGAGGCAGATCCCGTCTGCTCG
AAGAACATGGCTGCCGGGAAATTGATTTTCGAGGCGTTGGACGTGGCCGG
AGGCATGCCGGAGCTCACACAATCTTCTGCTGACTGCGTCATTGACGCTG
GTCTACTGGACAAGCTTATCACAACGGAGGGACTTGACGCCGCGAAGGCG
TGCTCCGACGCCGCCCACCGTGCCGTGCGCCTTGGAAACCCTTTGGTGGC
GTTGTCCATGATCAACAAGGACGACTTCGCCCAAATATTTGACGGAAACT
GGGGGTGGATGCAAGAGCTGGATGGGGACCCCGGCGCGGTAAGCCAGTGG
TACCGGGACAAGAAGGTCAACCTCAAGGACGTGGGCAACAACTTCGTTGA
GCTGGGGATATCCTTCTTCGTGTACACCAACGTGGATAACTGCTGACGGG
TCCTTTAGAACGAAGGGGCGAACGTCGGGAGGAGCGGCACTTGTAAACAA
GCCGTATGGTGTTTAAGGTGTTCAACGAGCATTCAAGTATCTGGGGGTTA
GAGTGCGTGTCGATAGAAGAAAATGCGCGAGCGCGATAAGCATTGATGAT
AGTAAGCGTGTTGGTCGAGGTGGGTTAGGGAATGTTCTGAAGGGCCTCCT
GGCGCGGATGGTCCTGGTGAGGCACGTCGAACTCGACACTCCTCGAAGCC
GAGGTACGGTGGACCGCCTGCTGGAGGATACAAATCCTTCACCGTTCACT
CACTTTTGGAGCACTGGCTGTAAATACAGTTACCAGGTGCTATGCATCTC
GACCAGCATAGGAGTATACGATGGACGCTGGTCACAGCAGTTATTCGAGA
TGAACCGCTCTATTTTCATGGCGGGTGGATGAGAAAACGAAAAACCCTAT
TCGTTCTGCGAAATGAGACCCATCTGTC
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protein sequence of EsuBft1029_3a-0001

>EsuBft1029_3 ID=EsuBft1029_3|Name=EsuBft1029_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=288bp
MGLNGTRQCVVAMAALSLGGVGVDSFLVPQQRFGGSSCARSCLRVEQQQQ
QQQQQQQQQQQQQQHEAGRRSSSSVTRMAATAEIGSFPYEDVLPFLKEHV
QPSDQMLLLGCGTELPLQLSRDGYGTRDGRSFMRCIDSDPDLIAAMKNAA
EADPVCSKNMAAGKLIFEALDVAGGMPELTQSSADCVIDAGLLDKLITTE
GLDAAKACSDAAHRAVRLGNPLVALSMINKDDFAQIFDGNWGWMQELDGD
PGAVSQWYRDKKVNLKDVGNNFVELGISFFVYTNVDNC
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mRNA from alignment at Scaffold_70:303776..308655-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1029_3a-0001 ID=EsuBft1029_3a-0001|Name=EsuBft1029_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4880bp|location=Sequence derived from alignment at Scaffold_70:303776..308655- (Ectocarpus subulatus male Bft15b)
CAGCGTCGCTTTGGCGGCATGGGGTGGGCTTAATTTGTTCGCTCTCACAG
AGGGGGAGGGCGACAGTTGTCTACTAACCATGGGTCTCAATGGAACGAGA
CAATGCGTGGTGGCGATGGCTGCCTTGAGCCTGGGCGGTGTTGGTGTGGA
TAGCTTCCTTGTGCCACAGCAGCGGTTCGGCGGCAGCAGCTGTGCAAGAT
CATGTTTGAGAGTAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCACGAGGCTGGAAGAAGATCGTCGTCCTC
CGTGACTAGGATGGCTGCTACCGCAGAGGTGAGCTTGGGACTGCTACATC
ATCAGTCGGCTGCAGAGACGTCGAGTGGTTCAAGAACAATTACCAAAATT
CTATGCGTCCTCTCGTGTGCGGGCTTTCATGATGAATGCCTGTCCTCCTG
CTGCATGTAGACTATACCTGTACTCAAACTGCTGTGTGCACACACGTTTG
TTTTCCGTTCTATGGTCGACGGTGGAACATTGACCGCTGCTCTATGCAGG
AAAGTTTGCGTTGAATCAACATGGCCGTTCAAACGCAAAGCTCCTTTGTG
CACCGGTGTACCGTATGTCAGTAGTGCTACGTTACCTGGCACGTGGCAGT
ATACGCTATTTACCACCCCTCCAGAAAAAATCAGAGACGCAAGGAAGCTA
CAAGGGGTTCAAAATTTGGCTGTGTATCTACGGGCGTACAACATGGAGAA
GGAGAAGTTTCCGTGAATAGCTTGGGAGGTGAAGTGTGCAAACAAGAAGA
AGGGGTAGCTAACCCACGGAGTGGGTTAAAGTTGTAGATGACGTATGGAA
GGAGTTCGAGTTGACCAAGGAAGTGAGTGGAAACGGTTGTAGGTCTAGAG
GGTGACAAGAAGATTGAATGTCAGATTAAAGACTGGGGACATTGGCCTTC
GAGAACGTAGGCGAAGATTGAGGAAGGTAGATGATGATGACGACGAATTC
AAATGTGAATGCGGCTCGGAGTGCGAACACCGGGGTCATGTAGGTGGAGA
ATGTCCGTCGTACGAAAGGAGAGAGAAATATGCATAACTGGGCTGAGAAA
AAGAAGGAAGATAGACAGGGAGCTGTTTTGCGGCATGGAACTACTGGGGC
ATAGTAAGTGGGTTGAATAGGCGGGAGGTTATATCGAAATGATAGATAGG
CTAGGGAAAACACTCCTGAGGCACCATAGGTAAAGTGGGAACGAATGATT
GACCATCGGTGATCGGTCCTGTGGGACCAATCAATCGTGCTCAATGGCCA
ACCGCAATAAGGCGCGCAAAAATTGAGTACCCCCCCGTCCTCGAAAATAC
GTGCTAAAAAAAGTGGTATCTACCATTGCACGCAACTTGCACCTTACCAT
AGGGGCACTAAAGTAGTAGACACGGCACCCCAAGGTCGGTTACTCCACGA
CGAAGCGGATATTTAAATTACCGGCACATCGTCGGAAAGCCCTCGACGAG
ACGGTGCCAGCGCCTGTCGGAGCCGCCACTCTCCCTTGTGAAGTAATTGA
GCTTTGGAACAATCGGTCGAGGGGTGCAATATCCCATGTAACCTACGGCA
CTCCAGGAGTCTTGAGACGATCTACGTAGGACGTAGGACAATCTGCTGGT
GCCTTTGCGCATGCCGTTTTTTCGTGCTGCTTAGTTTGATGCCGTTGATG
ATCGGCCACGGTGGGAAACAGATCGGTTCCTTCCCGTACGAAGATGTGCT
GCCGTTTCTCAAGGAGCACGTGCAGCCTTCCGACCAGATGCTGCTGCTGG
GGTGTGGGACAGAACTTCCTTTGCAGCTCTCTCGGGATGGCTACGGCACT
CGGTGAGACACTCTGCCTACCCGGCCCATGTAGCAGATGCGCTCGTGCGC
TCTCTGTGCACTTGTCTGCCACACACTACGGACCGGCCGCTGGGGGTGCC
ACCAGGTATAGAGCGCAAGGTGTGTTTTGGATTATGTCCACAGTCCCCCC
GTACATTACAAGAAAACGAGTGGACTTGACTTTGGCCTAGAGTCTCTATC
AACTACCGCTGTCCCGTCGATGATTTAGGGGACAACAATCGAAAGGATTT
CAGACTCGGGAGAGAAAGGAGTCCTCCAAAGGTCTTGAAAAGTGTGGGGA
CACGAGGGGACATTTGATGGGGATGCAAAACACGTGGGAAATAATCATGT
CGCACATGGTTTTTGAAGACTTGCACTTTATCGGATCACTGGAAGACGGT
TACGTTGAAGCTCGTTTGGCCTGGCGAAGCCAAGGCACAATAGTCCGCAC
CACTTGCTGTACGTGTCCAGGAAAAATTCGATCAGTTGTGGCTAGCGAGG
GCTGAGCTCTTTCACATGTGTCTGTCGTTCGCTTGTATCATGCTTGCATG
CCCCTTCGTCTTGTGTCCGTCCGCTTCGTTTCGGTTGCCTCGTCGCAGAG
ATGGCCGATCGTTCATGCGCTGCATCGACTCCGACCCCGACTTGATAGCG
GCCATGAAGAATGCGGCCGAGGCAGATCCCGTCTGCTCGAAGAACATGGC
TGCCGGGTAAGCGGGCACGAAAAAACGTCAAAAGAGAGAGCAGGCCACAC
ATTACTGCTGTCCTCGGCATCTTCCCTCGTCCCTCGTGCCCGCCTCCGAC
GGTCTGTGGGCAGGGCACATAGCAGCTCGTCCTGCTGTGTTTTGCACGCT
GTGGGTTGCTGTTCGTGCGACCATAGCAGAGTTCTGCTGCCCATTGGACG
GTGTGACTGTTTTGTAGACATGCTTTCTGTTCTGCGCATTCGGGCTGCTC
GCTGCTGCTTGTTTCCACCTTGTGGCCATGGCACAAAGCATTGACGTGCA
CTTCCCTCGTTTCTCATGCCGTTTTGTTGTTGTTGTTGTTGTGGATTTGG
GGGCTGTTCTTCTGCCTCCCTGCCAAGGAAATTGATTTTCGAGGCGTTGG
ACGTGGCCGGAGGCATGCCGGAGCTCACACAATCTTCTGCTGACTGCGTC
ATTGACGCTGGTCTACTGGACAAGCTTATCACAACGGAGGTACATGCTTG
GCCTTTTCAGCCCTCCTGGCGGCCCCTGCTTGCGTGTATATGTAGAAGGT
ATATGTGTCATCGGTCACTCAAAGGGGCACATTATGGGTACTTGGAAAAC
ATGACAAATTGCTTGCAATGGTACCTTCGGATTCATCTGTGAGGCGTGCT
TCATTCTTGGGTTGGCGTGGCGTCCCATGTGAAATGTGGTAGACTGCCAT
GGGAAGTAGATGGTGAGATGATGAAGTTCTTCAGTTGTCCTTGCTTTTTT
CTTTGTTTTGCCTTCCGGCAATCAATGGGCTGTGCTATTGTTGAAGTGCT
GTGGAACTCTGAACGATAAGCAGCGAACGCTCGTTTTTAGCAACGACCGG
CCGCCGTTTCTGTCACGTCGACACGCCCGTATTCCTCCTCGAACAGCATC
CTAGCTGCGCTGTAAACTGCTTCAGCTGTTGTCGAGCGTGTTCTTGTCGC
TCTGCTTTGATGGTGTGACGGTGTGACAGTGGGAGCGGGTCTGAGAGAGG
CGTCTTATTGGTCGCGTGACGCCCTCTGTGCTTGCTTGCTCTTTGAATTG
TACGGTAGATACCAGCTGCACGTTTGGTTGGCGTGTTTTTTGCATTGCTT
GCTTGTTTGATGGCAGGCCAGCCGCAACTGTTTTGCTCTGTAATAGTATT
TTTCTGTCTTTCGCATTTGTTTGCAGGGACTTGACGCCGCGAAGGCGTGC
TCCGACGCCGCCCACCGTGCCGTGCGCCTTGGAAACCCTTTGGTGGCGTT
GTCCATGATCAACAAGGACGACTTCGCCCAAATATTTGACGGAAACGTGC
GTTGCCGACCAGAACGGAACCAGCGGGGGGGGGGGGGGAGGATTGCCTCG
CCATGTTAGAGGAAACTCTTGTTGTACCTCGGCTGCCAATGATGCGTGCT
GTGCTTTGCAAAACTTGCTTGTGTTTTGGTCGGAGATCAGCCCTGAGTAG
TAGGCGGGTATTCAATATCATCCAAGGCCCCGCGGAGGCAGTAGACAACT
GGAAGCCGATACTTGAGATGCTCAACATATTCCAAGGCTCCACTGACACG
CTTCATTGCTCTTCAAGTTTTTTTGTTCTGCCCAACGTGTCGGACCGCCA
AAGCCGTCTCTGTTTGTGCTCAAGCCCCAGCTCCGACTGTCAACTATCCC
GCCTATCATCAATACGCTTGTTCCTGTGGCTCTGTCGTTACCCACCCGCA
GTGGGGGTGGATGCAAGAGCTGGATGGGGACCCCGGCGCGGTAAGCCAGT
GGTACCGGGACAAGAAGGTCAACCTCAAGGACGTGGGCAACAACTTCGTT
GAGCTGGGGATATCCTTCTTCGTGTACACCAACGTGGATAACTGCTGACG
GGTCCTTTAGAACGAAGGGGCGAACGTCGGGAGGAGCGGCACTTGTAAAC
AAGCCGTATGGTGTTTAAGGTGTTCAACGAGCATTCAAGTATCTGGGGGT
TAGAGTGCGTGTCGATAGAAGAAAATGCGCGAGCGCGATAAGCATTGATG
ATAGTAAGCGTGTTGGTCGAGGTGGGTTAGGGAATGTTCTGAAGGGCCTC
CTGGCGCGGATGGTCCTGGTGAGGCACGTCGAACTCGACACTCCTCGAAG
CCGAGGTACGGTGGACCGCCTGCTGGAGGATACAAATCCTTCACCGTTCA
CTCACTTTTGGAGCACTGGCTGTAAATACAGTTACCAGGTGCTATGCATC
TCGACCAGCATAGGAGTATACGATGGACGCTGGTCACAGCAGTTATTCGA
GATGAACCGCTCTATTTTCATGGCGGGTGGATGAGAAAACGAAAAACCCT
ATTCGTTCTGCGAAATGAGACCCATCTGTC
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Coding sequence (CDS) from alignment at Scaffold_70:303776..308655-

>EsuBft1029_3a-0001 ID=EsuBft1029_3a-0001|Name=EsuBft1029_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=867bp|location=Sequence derived from alignment at Scaffold_70:303776..308655- (Ectocarpus subulatus male Bft15b)
ATGGGTCTCAATGGAACGAGACAATGCGTGGTGGCGATGGCTGCCTTGAG
CCTGGGCGGTGTTGGTGTGGATAGCTTCCTTGTGCCACAGCAGCGGTTCG
GCGGCAGCAGCTGTGCAAGATCATGTTTGAGAGTAGAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACGAGGC
TGGAAGAAGATCGTCGTCCTCCGTGACTAGGATGGCTGCTACCGCAGAGA
TCGGTTCCTTCCCGTACGAAGATGTGCTGCCGTTTCTCAAGGAGCACGTG
CAGCCTTCCGACCAGATGCTGCTGCTGGGGTGTGGGACAGAACTTCCTTT
GCAGCTCTCTCGGGATGGCTACGGCACTCGAGATGGCCGATCGTTCATGC
GCTGCATCGACTCCGACCCCGACTTGATAGCGGCCATGAAGAATGCGGCC
GAGGCAGATCCCGTCTGCTCGAAGAACATGGCTGCCGGGAAATTGATTTT
CGAGGCGTTGGACGTGGCCGGAGGCATGCCGGAGCTCACACAATCTTCTG
CTGACTGCGTCATTGACGCTGGTCTACTGGACAAGCTTATCACAACGGAG
GGACTTGACGCCGCGAAGGCGTGCTCCGACGCCGCCCACCGTGCCGTGCG
CCTTGGAAACCCTTTGGTGGCGTTGTCCATGATCAACAAGGACGACTTCG
CCCAAATATTTGACGGAAACTGGGGGTGGATGCAAGAGCTGGATGGGGAC
CCCGGCGCGGTAAGCCAGTGGTACCGGGACAAGAAGGTCAACCTCAAGGA
CGTGGGCAACAACTTCGTTGAGCTGGGGATATCCTTCTTCGTGTACACCA
ACGTGGATAACTGCTGA
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