EsuBft917_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft917_8a-0001
Unique NameEsuBft917_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_70contigScaffold_70:155662..156408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft917_8
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length51
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft917_8aEsuBft917_8aEctocarpus subulatus male Bft15bgeneScaffold_70 155662..156408 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft917_8a-0001-exonEsuBft917_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_70 155662..155904 +
EsuBft917_8a-0001-exonagat-exon-21928Ectocarpus subulatus male Bft15bexonScaffold_70 156138..156408 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft917_8a-0001-exonagat-five_prime_utr-14969Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_70 155662..155764 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft917_8a-0001-cdsEsuBft917_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_70 155765..155904 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft917_8a-0001EsuBft917_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_70 155765..156408 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft917_8a-0001 ID=EsuBft917_8a-0001|Name=EsuBft917_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=514bp|location=Sequence derived from alignment at Scaffold_70:155662..156408+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGTATACGAGGTAAAATCCGGCTCGTTATCCCCTAAAAACCTAACCAAT
CAAGTGACGAAAACAGATACCGTTCGCTACGCTACGTCGTTCGCTGCTAC
TTTATGGATGGTGGGAATAGGCCGCACATTGCGTACTCCGGAGTAACCAC
AAGAGTTGGCATACACATGGTTTCATACTTGGCATGCATACGAAGTACTT
TGAAGCACTACCAGTTCAGGGGTGCCGCGCTTAGGGTTGCGTGTGCGCTG
CTTGCCGGGCTTGCCGCGGGCATCTTCCCGTGCCTGGTATCGTCCCGTGC
CGGTACCGAAGGGGCTTGGCATGTTTCTGACATGTTCCTCCGCGGTCGGT
CCGCAGTCGGCAGCCATGAACAGGAATACTGCCATGGATACGGTGTCGGG
AGGTTCTCAGATGTTCCGAGGCTATTCGATGTTCTACCGTGCGGCGACGT
GGAGGTCGATTTCCGCTCGATTTCCGTCGTCCGTAACCGGTCGCCCAGGT
GGTCTAGTTGGTAA
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protein sequence of EsuBft917_8a-0001

>EsuBft917_8 ID=EsuBft917_8|Name=EsuBft917_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=136bp
MDGGNRPHIAYSGVTTRVGIHMVSYLACIRSTLKHYQFRGAALRVACALL
AGLAAGIFPCLVSSRAGTEGAWHVSDMFLRGRSAVGSHEQEYCHGYGVGR
FSDVPRLFDVLPCGDVEVDFRSISVVRNRSPRWSSW
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mRNA from alignment at Scaffold_70:155662..156408+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft917_8a-0001 ID=EsuBft917_8a-0001|Name=EsuBft917_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=747bp|location=Sequence derived from alignment at Scaffold_70:155662..156408+ (Ectocarpus subulatus male Bft15b)
GTGTATACGAGGTAAAATCCGGCTCGTTATCCCCTAAAAACCTAACCAAT
CAAGTGACGAAAACAGATACCGTTCGCTACGCTACGTCGTTCGCTGCTAC
TTTATGGATGGTGGGAATAGGCCGCACATTGCGTACTCCGGAGTAACCAC
AAGAGTTGGCATACACATGGTTTCATACTTGGCATGCATACGAAGTACTT
TGAAGCACTACCAGTTCAGGGGTGCCGCGCTTAGGGTTGCGTGGTAAACT
GCCTCGACATGCTGCTGCTGCCCTCACGAGTCGGTGTGCACTCGTCGTGG
TGGTTGGTGTTTTTGTGTGTGTGGCGCGTGTGTGTTTTTATTATTAGCAT
CGACCGCGCTAACCGGCGCGTGCGTGTGTGTTCTTGCTGCATGCGCGTCT
TTTTGTTCTGTATGCGCGCCCGTTGGTTTTGTTGTCCGTTGTGTGTCACG
CATATATTTGTGGCGTTTGCCGTTAGTGCGCTGCTTGCCGGGCTTGCCGC
GGGCATCTTCCCGTGCCTGGTATCGTCCCGTGCCGGTACCGAAGGGGCTT
GGCATGTTTCTGACATGTTCCTCCGCGGTCGGTCCGCAGTCGGCAGCCAT
GAACAGGAATACTGCCATGGATACGGTGTCGGGAGGTTCTCAGATGTTCC
GAGGCTATTCGATGTTCTACCGTGCGGCGACGTGGAGGTCGATTTCCGCT
CGATTTCCGTCGTCCGTAACCGGTCGCCCAGGTGGTCTAGTTGGTAA
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Coding sequence (CDS) from alignment at Scaffold_70:155662..156408+

>EsuBft917_8a-0001 ID=EsuBft917_8a-0001|Name=EsuBft917_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=411bp|location=Sequence derived from alignment at Scaffold_70:155662..156408+ (Ectocarpus subulatus male Bft15b)
ATGGATGGTGGGAATAGGCCGCACATTGCGTACTCCGGAGTAACCACAAG
AGTTGGCATACACATGGTTTCATACTTGGCATGCATACGAAGTACTTTGA
AGCACTACCAGTTCAGGGGTGCCGCGCTTAGGGTTGCGTGTGCGCTGCTT
GCCGGGCTTGCCGCGGGCATCTTCCCGTGCCTGGTATCGTCCCGTGCCGG
TACCGAAGGGGCTTGGCATGTTTCTGACATGTTCCTCCGCGGTCGGTCCG
CAGTCGGCAGCCATGAACAGGAATACTGCCATGGATACGGTGTCGGGAGG
TTCTCAGATGTTCCGAGGCTATTCGATGTTCTACCGTGCGGCGACGTGGA
GGTCGATTTCCGCTCGATTTCCGTCGTCCGTAACCGGTCGCCCAGGTGGT
CTAGTTGGTAA
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