Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft917_8 |
| Protein domains | TRANSMEMBRANE |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | TMhelix |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Length | 51 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft917_8a-0001 ID=EsuBft917_8a-0001|Name=EsuBft917_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=514bp|location=Sequence derived from alignment at Scaffold_70:155662..156408+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GTGTATACGAGGTAAAATCCGGCTCGTTATCCCCTAAAAACCTAACCAAT
CAAGTGACGAAAACAGATACCGTTCGCTACGCTACGTCGTTCGCTGCTAC
TTTATGGATGGTGGGAATAGGCCGCACATTGCGTACTCCGGAGTAACCAC
AAGAGTTGGCATACACATGGTTTCATACTTGGCATGCATACGAAGTACTT
TGAAGCACTACCAGTTCAGGGGTGCCGCGCTTAGGGTTGCGTGTGCGCTG
CTTGCCGGGCTTGCCGCGGGCATCTTCCCGTGCCTGGTATCGTCCCGTGC
CGGTACCGAAGGGGCTTGGCATGTTTCTGACATGTTCCTCCGCGGTCGGT
CCGCAGTCGGCAGCCATGAACAGGAATACTGCCATGGATACGGTGTCGGG
AGGTTCTCAGATGTTCCGAGGCTATTCGATGTTCTACCGTGCGGCGACGT
GGAGGTCGATTTCCGCTCGATTTCCGTCGTCCGTAACCGGTCGCCCAGGT
GGTCTAGTTGGTAA back to topprotein sequence of EsuBft917_8a-0001 >EsuBft917_8 ID=EsuBft917_8|Name=EsuBft917_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=136bp
MDGGNRPHIAYSGVTTRVGIHMVSYLACIRSTLKHYQFRGAALRVACALL
AGLAAGIFPCLVSSRAGTEGAWHVSDMFLRGRSAVGSHEQEYCHGYGVGR
FSDVPRLFDVLPCGDVEVDFRSISVVRNRSPRWSSW back to topmRNA from alignment at Scaffold_70:155662..156408+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft917_8a-0001 ID=EsuBft917_8a-0001|Name=EsuBft917_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=747bp|location=Sequence derived from alignment at Scaffold_70:155662..156408+ (Ectocarpus subulatus male Bft15b)
GTGTATACGAGGTAAAATCCGGCTCGTTATCCCCTAAAAACCTAACCAAT
CAAGTGACGAAAACAGATACCGTTCGCTACGCTACGTCGTTCGCTGCTAC
TTTATGGATGGTGGGAATAGGCCGCACATTGCGTACTCCGGAGTAACCAC
AAGAGTTGGCATACACATGGTTTCATACTTGGCATGCATACGAAGTACTT
TGAAGCACTACCAGTTCAGGGGTGCCGCGCTTAGGGTTGCGTGGTAAACT
GCCTCGACATGCTGCTGCTGCCCTCACGAGTCGGTGTGCACTCGTCGTGG
TGGTTGGTGTTTTTGTGTGTGTGGCGCGTGTGTGTTTTTATTATTAGCAT
CGACCGCGCTAACCGGCGCGTGCGTGTGTGTTCTTGCTGCATGCGCGTCT
TTTTGTTCTGTATGCGCGCCCGTTGGTTTTGTTGTCCGTTGTGTGTCACG
CATATATTTGTGGCGTTTGCCGTTAGTGCGCTGCTTGCCGGGCTTGCCGC
GGGCATCTTCCCGTGCCTGGTATCGTCCCGTGCCGGTACCGAAGGGGCTT
GGCATGTTTCTGACATGTTCCTCCGCGGTCGGTCCGCAGTCGGCAGCCAT
GAACAGGAATACTGCCATGGATACGGTGTCGGGAGGTTCTCAGATGTTCC
GAGGCTATTCGATGTTCTACCGTGCGGCGACGTGGAGGTCGATTTCCGCT
CGATTTCCGTCGTCCGTAACCGGTCGCCCAGGTGGTCTAGTTGGTAA back to topCoding sequence (CDS) from alignment at Scaffold_70:155662..156408+ >EsuBft917_8a-0001 ID=EsuBft917_8a-0001|Name=EsuBft917_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=411bp|location=Sequence derived from alignment at Scaffold_70:155662..156408+ (Ectocarpus subulatus male Bft15b)
ATGGATGGTGGGAATAGGCCGCACATTGCGTACTCCGGAGTAACCACAAG
AGTTGGCATACACATGGTTTCATACTTGGCATGCATACGAAGTACTTTGA
AGCACTACCAGTTCAGGGGTGCCGCGCTTAGGGTTGCGTGTGCGCTGCTT
GCCGGGCTTGCCGCGGGCATCTTCCCGTGCCTGGTATCGTCCCGTGCCGG
TACCGAAGGGGCTTGGCATGTTTCTGACATGTTCCTCCGCGGTCGGTCCG
CAGTCGGCAGCCATGAACAGGAATACTGCCATGGATACGGTGTCGGGAGG
TTCTCAGATGTTCCGAGGCTATTCGATGTTCTACCGTGCGGCGACGTGGA
GGTCGATTTCCGCTCGATTTCCGTCGTCCGTAACCGGTCGCCCAGGTGGT
CTAGTTGGTAA back to top
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