EsuBft957_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Seed ortholog	6500.XP_005092035.1
ProteomeId	EsuBft957_2
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	SSF56672
Protein domains	TRANSMEMBRANE
Protein domains	PTHR19446
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Note	line-1 retrotransposable element orf2 protein os:homo sapiens pe:1 sv:1 [Automatic annotation]
Nb exon	3
Max annot lvl	33208\|Metazoa
Length	1269
Hectar predicted targeting category	other localisation
Evalue	2.54e-41
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,39TZY@33154\|Opisthokonta,3BI15@33208\|Metazoa,3D94V@33213\|Bilateria
Date last modified	2016-06-13
Date creation	2016-06-13
Description	Ribonuclease H protein
COG category	S

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_68:226213..227767+
coding sequence from alignment at Scaffold_68:226213..227767+

spliced messenger RNA

>EsuBft957_2a-0001 ID=EsuBft957_2a-0001|Name=EsuBft957_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1269bp|location=Sequence derived from alignment at Scaffold_68:226213..227767+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGGTGGCCCACGTGCGTGCCACTCGACGACATCCCATCTC
TACTTGAGGTTGAGGAAGCGGTACGGGAAATGGCCAACAGAAAGGCCGTC
GGGCCGGACGACCTACCGGCTGAGCTGATCAAGCTTTTCCTGGACGGAGA
TCAAGTGCTGTTCAAGAAGGGGGACACGATGGAGTGCGGCAACTACCGGG
GCATCTCGCTCGTCGCACACGCCGGCAAGGTGCTGCTTAAGGTCGTCGCT
ACACGACTGAGCCACTACTGCGAGCGAGAGGGCATCCTCCCGGAGGAGGA
GAGCGGTTTCCGCCCACACCGGTCGACGCTCGACATGCTGTTCGCCATCC
AGCGGCTCCATGAGCTCGCGAGGAAGAAGAGTACTGCGGTGTTCGCGTGT
TTCGTCGACCTCACCAAGGCATACGATTCGGTGGACCGAGACCTACTGTG
GGACGTGCTCCGACGCTTCGGCGTGCCCCCGAAGATGCTGGCGGTCATTC
GCCACTTCCACGAGGGCATGAGGGCGCGCGTCCGAACGGACGACGGGCAG
TACTCGGAATGGTTCGACGTGGGCCAAGGCCTCCGACAGGGATGCAACCT
GGCCTCGCCACTGTTCAACTTGTTCTTGGCCGCGATGCTCATGGTCGCCG
TGGCCGATGCCTGATGCTGGTGCGTTACCCTTTGATTTTTTCTTTCGGCG
GGTGTGGGACGCGTCCTCCTTTATTTTTGTGTTTGTTTTATTTTGATCGG
TGTCCGAGGGATCTTTTCTCGAACGGTCGGTGCGATACCTGTTATTTTCT
TTCAATCATTTTGTTTTCTTGTTCCGAGTGGTTCGTACCCTATTTTTGTT
TTGTTTCTCCGCGGCGTCGTATGTGCAAGGTTTTGAGACCACGGGCTTCC
CATTTTTTGTGGACTATAGAGCTAATGTGAGAGACAACAACAACAACAAC
TCCGCACATATGCATACCAAATTGAAAATACGTTTGTAAACTGATGGAGA
TTGCATGTCCTAAAACTAACAGGGTGCGACACACAAAACGCCCGACTAAC
CAACAGCACCCAAAACTTTCGTCTGCACGTTCCCAACATAACATATATGA
GACACACAAGGCAGCTACCAAACTGATTTGTTGAGCCTGTTATCCGCAGG
GGACATGTCCCTATATGCT

protein sequence of EsuBft957_2a-0001

>EsuBft957_2 ID=EsuBft957_2|Name=EsuBft957_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=194bp
MANRKAVGPDDLPAELIKLFLDGDQVLFKKGDTMECGNYRGISLVAHAGK
VLLKVVATRLSHYCEREGILPEEESGFRPHRSTLDMLFAIQRLHELARKK
STAVFACFVDLTKAYDSVDRDLLWDVLRRFGVPPKMLAVIRHFHEGMRAR
VRTDDGQYSEWFDVGQGLRQGCNLASPLFNLFLAAMLMVAVADA

mRNA from alignment at Scaffold_68:226213..227767+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft957_2a-0001 ID=EsuBft957_2a-0001|Name=EsuBft957_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1555bp|location=Sequence derived from alignment at Scaffold_68:226213..227767+ (Ectocarpus subulatus male Bft15b)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGGTGGCCCACGTGCGTGCCACTCGACGACATCCCATCTC
TACTTGAGGTTGAGGAAGCGGTACGGGAAATGGCCAACAGAAAGGCCGTC
GGGCCGGACGACCTACCGGCTGAGCTGATCAAGCTTTTCCTGGACGGAGA
TCAAGGTCTCCTCCGCGAATTCCTCGCCACTGTCGTGGACGTGTGGCAGA
CTGGCGACGTACCATAACAGTGGAACGATGCCACCATCAAAGTGCTGTTC
AAGAAGGGGGACACGATGGAGTGCGGCAACTACCGGGGCATCTCGCTCGT
CGCACACGCCGGCAAGGTGCTGCTTAAGGTCGTCGCTACACGACTGAGCC
ACTACTGCGAGCGAGAGGGCATCCTCCCGGAGGAGGAGAGCGGTTTCCGC
CCACACCGGTCGACGCTCGACATGCTGTTCGCCATCCAGCGGCTCCATGA
GCTCGCGAGGAAGAAGAGTACTGCGGTGTTCGCGTGTTTCGTCGACCTCA
CCAAGGCATACGATTCGGTGGACCGAGACCTACTGTGGGACGTGCTCCGA
CGCTTCGGCGTGCCCCCGAAGATGCTGGCGGTCATTCGCCACTTCCACGA
GGGCATGAGGGCGCGCGTCCGAACGGACGACGGGCAGTACTCGGAATGGT
TCGACGTGGGCCAAGGCCTCCGACAGGGATGCAACCTGGCCTCGCCACTG
TTCAACTTGTTCTTGGCCGCGATGCTCATGGTCGCCGTGGCCGAGTTCGA
CAAGGACCCCAAACCTTCGGCCTCTGTGCTGTGTTTCTGTGTTTCTTTTT
TTCATGACCTCCCTGCCTACTGTGATGTGTTGGGTACCGTGATCTCGCTT
TGCTGTTGCCTTTGTTTTTGTACGTCTGGCTGTATGCCCATCTGCCGCCT
CTTTGTCCGGTTTGCTCCGTTACTCCCATGCCCTGGTGCGTAGTGCCTGA
TGCTGGTGCGTTACCCTTTGATTTTTTCTTTCGGCGGGTGTGGGACGCGT
CCTCCTTTATTTTTGTGTTTGTTTTATTTTGATCGGTGTCCGAGGGATCT
TTTCTCGAACGGTCGGTGCGATACCTGTTATTTTCTTTCAATCATTTTGT
TTTCTTGTTCCGAGTGGTTCGTACCCTATTTTTGTTTTGTTTCTCCGCGG
CGTCGTATGTGCAAGGTTTTGAGACCACGGGCTTCCCATTTTTTGTGGAC
TATAGAGCTAATGTGAGAGACAACAACAACAACAACTCCGCACATATGCA
TACCAAATTGAAAATACGTTTGTAAACTGATGGAGATTGCATGTCCTAAA
ACTAACAGGGTGCGACACACAAAACGCCCGACTAACCAACAGCACCCAAA
ACTTTCGTCTGCACGTTCCCAACATAACATATATGAGACACACAAGGCAG
CTACCAAACTGATTTGTTGAGCCTGTTATCCGCAGGGGACATGTCCCTAT
ATGCT

Coding sequence (CDS) from alignment at Scaffold_68:226213..227767+

>EsuBft957_2a-0001 ID=EsuBft957_2a-0001|Name=EsuBft957_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=585bp|location=Sequence derived from alignment at Scaffold_68:226213..227767+ (Ectocarpus subulatus male Bft15b)
ATGGCCAACAGAAAGGCCGTCGGGCCGGACGACCTACCGGCTGAGCTGAT
CAAGCTTTTCCTGGACGGAGATCAAGTGCTGTTCAAGAAGGGGGACACGA
TGGAGTGCGGCAACTACCGGGGCATCTCGCTCGTCGCACACGCCGGCAAG
GTGCTGCTTAAGGTCGTCGCTACACGACTGAGCCACTACTGCGAGCGAGA
GGGCATCCTCCCGGAGGAGGAGAGCGGTTTCCGCCCACACCGGTCGACGC
TCGACATGCTGTTCGCCATCCAGCGGCTCCATGAGCTCGCGAGGAAGAAG
AGTACTGCGGTGTTCGCGTGTTTCGTCGACCTCACCAAGGCATACGATTC
GGTGGACCGAGACCTACTGTGGGACGTGCTCCGACGCTTCGGCGTGCCCC
CGAAGATGCTGGCGGTCATTCGCCACTTCCACGAGGGCATGAGGGCGCGC
GTCCGAACGGACGACGGGCAGTACTCGGAATGGTTCGACGTGGGCCAAGG
CCTCCGACAGGGATGCAACCTGGCCTCGCCACTGTTCAACTTGTTCTTGG
CCGCGATGCTCATGGTCGCCGTGGCCGATGCCTGA